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Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak

Identifieur interne : 001089 ( Pmc/Curation ); précédent : 001088; suivant : 001090

Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak

Auteurs : Shi Zhao [République populaire de Chine] ; Qianyin Lin [États-Unis] ; Jinjun Ran [République populaire de Chine] ; Salihu S. Musa [République populaire de Chine] ; Guangpu Yang [République populaire de Chine] ; Weiming Wang [République populaire de Chine] ; Yijun Lou [République populaire de Chine] ; Daozhou Gao [République populaire de Chine] ; Lin Yang [République populaire de Chine] ; Daihai He [République populaire de Chine] ; Maggie H. Wang [République populaire de Chine]

Source :

RBID : PMC:7110798

Abstract

Highlights

The novel coronavirus (2019-nCoV) pneumonia has caused 2033 confirmed cases, including 56 deaths in mainland China, by 2020-01-26 17:06.

We aim to estimate the basic reproduction number of 2019-nCoV in Wuhan, China using the exponential growth model method.

We estimated that the mean R0 ranges from 2.24 to 3.58 with an 8-fold to 2-fold increase in the reporting rate.

Changes in reporting likely occurred and should be taken into account in the estimation of R0.


Url:
DOI: 10.1016/j.ijid.2020.01.050
PubMed: 32007643
PubMed Central: 7110798

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PMC:7110798

Le document en format XML

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<p id="par0005">The novel coronavirus (2019-nCoV) pneumonia has caused 2033 confirmed cases, including 56 deaths in mainland China, by 2020-01-26 17:06.</p>
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<p id="par0010">We aim to estimate the basic reproduction number of 2019-nCoV in Wuhan, China using the exponential growth model method.</p>
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<p id="par0015">We estimated that the mean
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</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Int J Infect Dis</journal-id>
<journal-id journal-id-type="iso-abbrev">Int. J. Infect. Dis</journal-id>
<journal-title-group>
<journal-title>International Journal of Infectious Diseases</journal-title>
</journal-title-group>
<issn pub-type="ppub">1201-9712</issn>
<issn pub-type="epub">1878-3511</issn>
<publisher>
<publisher-name>The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">32007643</article-id>
<article-id pub-id-type="pmc">7110798</article-id>
<article-id pub-id-type="publisher-id">S1201-9712(20)30053-9</article-id>
<article-id pub-id-type="doi">10.1016/j.ijid.2020.01.050</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" id="aut0005">
<name>
<surname>Zhao</surname>
<given-names>Shi</given-names>
</name>
<email>shi.zhao@link.cuhk.edu.hk</email>
<xref rid="aff0005" ref-type="aff">a</xref>
<xref rid="aff0010" ref-type="aff">b</xref>
<xref rid="cor0005" ref-type="corresp"></xref>
</contrib>
<contrib contrib-type="author" id="aut0010">
<name>
<surname>Lin</surname>
<given-names>Qianyin</given-names>
</name>
<email>qianying.lin@connect.polyu.hk</email>
<xref rid="aff0015" ref-type="aff">c</xref>
</contrib>
<contrib contrib-type="author" id="aut0015">
<name>
<surname>Ran</surname>
<given-names>Jinjun</given-names>
</name>
<email>jimran@connect.hku.hk</email>
<xref rid="aff0020" ref-type="aff">d</xref>
</contrib>
<contrib contrib-type="author" id="aut0020">
<name>
<surname>Musa</surname>
<given-names>Salihu S.</given-names>
</name>
<email>salihu-sabiu.musa@connect.polyu.hk</email>
<xref rid="aff0025" ref-type="aff">e</xref>
</contrib>
<contrib contrib-type="author" id="aut0025">
<name>
<surname>Yang</surname>
<given-names>Guangpu</given-names>
</name>
<email>kennethgpy@link.cuhk.edu.hk</email>
<xref rid="aff0030" ref-type="aff">f</xref>
<xref rid="aff0035" ref-type="aff">g</xref>
</contrib>
<contrib contrib-type="author" id="aut0030">
<name>
<surname>Wang</surname>
<given-names>Weiming</given-names>
</name>
<email>weimingwang2003@163.com</email>
<xref rid="aff0040" ref-type="aff">h</xref>
<xref rid="cor0005" ref-type="corresp"></xref>
</contrib>
<contrib contrib-type="author" id="aut0035">
<name>
<surname>Lou</surname>
<given-names>Yijun</given-names>
</name>
<email>yijun.lou@polyu.edu.hk</email>
<xref rid="aff0025" ref-type="aff">e</xref>
</contrib>
<contrib contrib-type="author" id="aut0040">
<name>
<surname>Gao</surname>
<given-names>Daozhou</given-names>
</name>
<email>dzgao@shnu.edu.cn</email>
<xref rid="aff0045" ref-type="aff">i</xref>
</contrib>
<contrib contrib-type="author" id="aut0045">
<name>
<surname>Yang</surname>
<given-names>Lin</given-names>
</name>
<email>l.yang@polyu.edu.hk</email>
<xref rid="aff0050" ref-type="aff">j</xref>
</contrib>
<contrib contrib-type="author" id="aut0050">
<name>
<surname>He</surname>
<given-names>Daihai</given-names>
</name>
<email>daihai.he@polyu.edu.hk</email>
<xref rid="aff0025" ref-type="aff">e</xref>
<xref rid="cor0005" ref-type="corresp"></xref>
</contrib>
<contrib contrib-type="author" id="aut0055">
<name>
<surname>Wang</surname>
<given-names>Maggie H.</given-names>
</name>
<email>maggiew@cuhk.edu.hk</email>
<xref rid="aff0005" ref-type="aff">a</xref>
<xref rid="aff0010" ref-type="aff">b</xref>
</contrib>
</contrib-group>
<aff id="aff0005">
<label>a</label>
JC School of Public Health and Primary Care, Chinese University of Hong Kong, Hong Kong, China</aff>
<aff id="aff0010">
<label>b</label>
Shenzhen Research Institute of Chinese University of Hong Kong, Shenzhen, China</aff>
<aff id="aff0015">
<label>c</label>
Michigan Institute for Data Science, University of Michigan, Ann Arbor, MI, USA</aff>
<aff id="aff0020">
<label>d</label>
School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, China</aff>
<aff id="aff0025">
<label>e</label>
Department of Applied Mathematics, Hong Kong Polytechnic University, Hong Kong, China</aff>
<aff id="aff0030">
<label>f</label>
Department of Orthopaedics and Traumatology, Chinese University of Hong Kong, Hong Kong, China</aff>
<aff id="aff0035">
<label>g</label>
SH Ho Scoliosis Research Lab, Joint Scoliosis Research Center of Chinese University of Hong Kong and Nanjing University, Hong Kong, China</aff>
<aff id="aff0040">
<label>h</label>
School of Mathematics and Statistics, Huaiyin Normal University, Huaian, China</aff>
<aff id="aff0045">
<label>i</label>
Department of Mathematics, Shanghai Normal University, Shanghai, China</aff>
<aff id="aff0050">
<label>j</label>
School of Nursing, Hong Kong Polytechnic University, Hong Kong, China</aff>
<author-notes>
<corresp id="cor0005">
<label></label>
Corresponding authors.
<email>shi.zhao@link.cuhk.edu.hk</email>
<email>weimingwang2003@163.com</email>
<email>daihai.he@polyu.edu.hk</email>
</corresp>
</author-notes>
<pub-date pub-type="pmc-release">
<day>30</day>
<month>1</month>
<year>2020</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub">
<month>3</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="epub">
<day>30</day>
<month>1</month>
<year>2020</year>
</pub-date>
<volume>92</volume>
<fpage>214</fpage>
<lpage>217</lpage>
<history>
<date date-type="received">
<day>23</day>
<month>1</month>
<year>2020</year>
</date>
<date date-type="rev-recd">
<day>27</day>
<month>1</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>1</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>© 2020 The Author(s)</copyright-statement>
<copyright-year>2020</copyright-year>
<license>
<license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p>
</license>
</permissions>
<abstract abstract-type="author-highlights" id="abs0005">
<title>Highlights</title>
<p>
<list list-type="simple" id="lis0005">
<list-item id="lsti0005">
<label></label>
<p id="par0005">The novel coronavirus (2019-nCoV) pneumonia has caused 2033 confirmed cases, including 56 deaths in mainland China, by 2020-01-26 17:06.</p>
</list-item>
<list-item id="lsti0010">
<label></label>
<p id="par0010">We aim to estimate the basic reproduction number of 2019-nCoV in Wuhan, China using the exponential growth model method.</p>
</list-item>
<list-item id="lsti0015">
<label></label>
<p id="par0015">We estimated that the mean
<italic>R</italic>
<sub>0</sub>
ranges from 2.24 to 3.58 with an 8-fold to 2-fold increase in the reporting rate.</p>
</list-item>
<list-item id="lsti0020">
<label></label>
<p id="par0020">Changes in reporting likely occurred and should be taken into account in the estimation of
<italic>R</italic>
<sub>0</sub>
.</p>
</list-item>
</list>
</p>
</abstract>
<abstract id="abs0010">
<sec>
<title>Backgrounds</title>
<p>An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia hit a major city in China, Wuhan, December 2019 and subsequently reached other provinces/regions of China and other countries. We present estimates of the basic reproduction number,
<italic>R</italic>
<sub>0</sub>
, of 2019-nCoV in the early phase of the outbreak.</p>
</sec>
<sec>
<title>Methods</title>
<p>Accounting for the impact of the variations in disease reporting rate, we modelled the epidemic curve of 2019-nCoV cases time series, in mainland China from January 10 to January 24, 2020, through the exponential growth. With the estimated intrinsic growth rate (
<italic>γ</italic>
), we estimated
<italic>R</italic>
<sub>0</sub>
by using the serial intervals (SI) of two other well-known coronavirus diseases, MERS and SARS, as approximations for the true unknown SI.</p>
</sec>
<sec>
<title>Findings</title>
<p>The early outbreak data largely follows the exponential growth. We estimated that the mean
<italic>R</italic>
<sub>0</sub>
ranges from 2.24 (95%CI: 1.96–2.55) to 3.58 (95%CI: 2.89–4.39) associated with 8-fold to 2-fold increase in the reporting rate. We demonstrated that changes in reporting rate substantially affect estimates of
<italic>R</italic>
<sub>0</sub>
.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>The mean estimate of
<italic>R</italic>
<sub>0</sub>
for the 2019-nCoV ranges from 2.24 to 3.58, and is significantly larger than 1. Our findings indicate the potential of 2019-nCoV to cause outbreaks.</p>
</sec>
</abstract>
<kwd-group id="kwd0005">
<title>Keywords</title>
<kwd>Basic reproduction number</kwd>
<kwd>Novel coronavirus (2019-nCoV)</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
</record>

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