The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
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- Nature Microbiology [ 2058-5276 ] ; 2020.
Abstract
The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The
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DOI: 10.1038/s41564-020-0695-z
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PubMed Central: 7095448
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The species <italic>Severe acute respiratory syndrome-related coronavirus</italic>: classifying 2019-nCoV and naming it SARS-CoV-2</title></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmc">7095448</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7095448</idno><idno type="RBID">PMC:7095448</idno><idno type="doi">10.1038/s41564-020-0695-z</idno><idno type="pmid">NONE</idno><date when="2020">2020</date><idno type="wicri:Area/Pmc/Corpus">000555</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000555</idno><idno type="wicri:Area/Pmc/Curation">000555</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000555</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The species <italic>Severe acute respiratory syndrome-related coronavirus</italic>: classifying 2019-nCoV and naming it SARS-CoV-2</title></analytic><series><title level="j">Nature Microbiology</title><idno type="eISSN">2058-5276</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The <italic>Coronaviridae</italic> Study Group (CSG) of the International Committee on Taxonomy of Viruses, which is responsible for developing the classification of viruses and taxon nomenclature of the family <italic>Coronaviridae</italic>, has assessed the placement of the human pathogen, tentatively named 2019-nCoV, within the <italic>Coronaviridae</italic>. Based on phylogeny, taxonomy and established practice, the CSG recognizes this virus as forming a sister clade to the prototype human and bat severe acute respiratory syndrome coronaviruses (SARS-CoVs) of the species <italic>Severe acute respiratory syndrome-related coronavirus</italic>, and designates it as SARS-CoV-2. In order to facilitate communication, the CSG proposes to use the following naming convention for individual isolates: SARS-CoV-2/host/location/isolate/date. While the full spectrum of clinical manifestations associated with SARS-CoV-2 infections in humans remains to be determined, the independent zoonotic transmission of SARS-CoV and SARS-CoV-2 highlights the need for studying viruses at the species level to complement research focused on individual pathogenic viruses of immediate significance. This will improve our understanding of virus–host interactions in an ever-changing environment and enhance our preparedness for future outbreaks.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Krammer, F" uniqKey="Krammer F">F Krammer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zheng, Dp" uniqKey="Zheng D">DP Zheng</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Adams, Mj" uniqKey="Adams M">MJ Adams</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gorbalenya, A E" uniqKey="Gorbalenya A">A.E. Gorbalenya</name></author><author><name sortKey="Lauber, C" uniqKey="Lauber C">C. Lauber</name></author><author><name sortKey="Siddell, S" uniqKey="Siddell S">S. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Nat Microbiol</journal-id><journal-id journal-id-type="iso-abbrev">Nat Microbiol</journal-id><journal-title-group><journal-title>Nature Microbiology</journal-title></journal-title-group><issn pub-type="epub">2058-5276</issn><publisher><publisher-name>Nature Publishing Group UK</publisher-name><publisher-loc>London</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmc">7095448</article-id><article-id pub-id-type="publisher-id">695</article-id><article-id pub-id-type="doi">10.1038/s41564-020-0695-z</article-id><article-categories><subj-group subj-group-type="heading"><subject>Consensus Statement</subject></subj-group></article-categories><title-group><article-title>The species <italic>Severe acute respiratory syndrome-related coronavirus</italic>: classifying 2019-nCoV and naming it SARS-CoV-2</article-title></title-group><contrib-group><contrib contrib-type="author" id="IAu1"><collab>Coronaviridae Study Group of the International Committee on Taxonomy of Viruses<contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Gorbalenya</surname><given-names>Alexander E.</given-names></name><xref ref-type="aff" rid="Aff1">1</xref><xref ref-type="aff" rid="Aff2">2</xref><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Baker</surname><given-names>Susan C.</given-names></name><xref ref-type="aff" rid="Aff4">4</xref></contrib><contrib contrib-type="author"><name><surname>Baric</surname><given-names>Ralph S.</given-names></name><xref ref-type="aff" rid="Aff5">5</xref></contrib><contrib contrib-type="author"><name><surname>de Groot</surname><given-names>Raoul J.</given-names></name><xref ref-type="aff" rid="Aff6">6</xref></contrib><contrib contrib-type="author"><name><surname>Drosten</surname><given-names>Christian</given-names></name><xref ref-type="aff" rid="Aff7">7</xref></contrib><contrib contrib-type="author"><name><surname>Gulyaeva</surname><given-names>Anastasia A.</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Haagmans</surname><given-names>Bart L.</given-names></name><xref ref-type="aff" rid="Aff8">8</xref></contrib><contrib contrib-type="author"><name><surname>Lauber</surname><given-names>Chris</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Leontovich</surname><given-names>Andrey M.</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Neuman</surname><given-names>Benjamin W.</given-names></name><xref ref-type="aff" rid="Aff9">9</xref></contrib><contrib contrib-type="author"><name><surname>Penzar</surname><given-names>Dmitry</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Perlman</surname><given-names>Stanley</given-names></name><xref ref-type="aff" rid="Aff10">10</xref></contrib><contrib contrib-type="author"><name><surname>Poon</surname><given-names>Leo L. M.</given-names></name><xref ref-type="aff" rid="Aff11">11</xref></contrib><contrib contrib-type="author"><name><surname>Samborskiy</surname><given-names>Dmitry V.</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Sidorov</surname><given-names>Igor A.</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Sola</surname><given-names>Isabel</given-names></name><xref ref-type="aff" rid="Aff12">12</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Ziebuhr</surname><given-names>John</given-names></name><address><email>John.Ziebuhr@viro.med.uni-giessen.de</email></address><xref ref-type="aff" rid="Aff13">13</xref></contrib></contrib-group></collab><address><email>A.E.Gorbalenya@lumc.nl</email></address><xref ref-type="aff" rid="Aff1">1</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="ISNI">0000000089452978</institution-id><institution-id institution-id-type="GRID">grid.10419.3d</institution-id><institution>Department of Biomedical Data Sciences,</institution><institution>Leiden University Medical Center,</institution></institution-wrap>Leiden, the Netherlands</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="ISNI">0000000089452978</institution-id><institution-id institution-id-type="GRID">grid.10419.3d</institution-id><institution>Department of Medical Microbiology,</institution><institution>Leiden University Medical Center,</institution></institution-wrap>Leiden, the Netherlands</aff><aff id="Aff3"><label>3</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2342 9668</institution-id><institution-id institution-id-type="GRID">grid.14476.30</institution-id><institution>Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology,</institution><institution>Lomonosov Moscow State University,</institution></institution-wrap>Moscow, Russia</aff><aff id="Aff4"><label>4</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 1089 6558</institution-id><institution-id institution-id-type="GRID">grid.164971.c</institution-id><institution>Department of Microbiology and Immunology,</institution><institution>Loyola University of Chicago, Stritch School of Medicine,</institution></institution-wrap>Maywood, IL USA</aff><aff id="Aff5"><label>5</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 1034 1720</institution-id><institution-id institution-id-type="GRID">grid.410711.2</institution-id><institution>Department of Epidemiology,</institution><institution>University of North Carolina,</institution></institution-wrap>Chapel Hill, NC USA</aff><aff id="Aff6"><label>6</label><institution-wrap><institution-id institution-id-type="ISNI">0000000120346234</institution-id><institution-id institution-id-type="GRID">grid.5477.1</institution-id><institution>Division of Virology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine,</institution><institution>Utrecht University,</institution></institution-wrap>Utrecht, the Netherlands</aff><aff id="Aff7"><label>7</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2218 4662</institution-id><institution-id institution-id-type="GRID">grid.6363.0</institution-id><institution>Institute of Virology,</institution><institution>Charité – Universitätsmedizin Berlin,</institution></institution-wrap>Berlin, Germany</aff><aff id="Aff8"><label>8</label><institution-wrap><institution-id institution-id-type="ISNI">000000040459992X</institution-id><institution-id institution-id-type="GRID">grid.5645.2</institution-id><institution>Viroscience Lab, Erasmus MC,</institution></institution-wrap>Rotterdam, the Netherlands</aff><aff id="Aff9"><label>9</label><institution-wrap><institution-id institution-id-type="GRID">grid.264762.3</institution-id><institution>Texas A&M University-Texarkana,</institution></institution-wrap>Texarkana, TX USA</aff><aff id="Aff10"><label>10</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8294</institution-id><institution-id institution-id-type="GRID">grid.214572.7</institution-id><institution>Department of Microbiology and Immunology,</institution><institution>University of Iowa,</institution></institution-wrap>Iowa City, IA USA</aff><aff id="Aff11"><label>11</label><institution-wrap><institution-id institution-id-type="ISNI">0000000121742757</institution-id><institution-id institution-id-type="GRID">grid.194645.b</institution-id><institution>Centre of Influenza Research & School of Public Health,</institution><institution>The University of Hong Kong,</institution></institution-wrap>Hong Kong, People’s Republic of China</aff><aff id="Aff12"><label>12</label><institution-wrap><institution-id institution-id-type="ISNI">0000000119578126</institution-id><institution-id institution-id-type="GRID">grid.5515.4</institution-id><institution>Department of Molecular and Cell Biology,</institution><institution>National Center of Biotechnology (CNB-CSIC), Campus de Cantoblanco,</institution></institution-wrap>Madrid, Spain</aff><aff id="Aff13"><label>13</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2165 8627</institution-id><institution-id institution-id-type="GRID">grid.8664.c</institution-id><institution>Institute of Medical Virology,</institution><institution>Justus Liebig University Giessen,</institution></institution-wrap>Giessen, Germany</aff></contrib-group><pub-date pub-type="epub"><day>2</day><month>3</month><year>2020</year></pub-date><pub-date pub-type="pmc-release"><day>2</day><month>3</month><year>2020</year></pub-date><fpage>1</fpage><lpage>9</lpage><history><date date-type="received"><day>5</day><month>2</month><year>2020</year></date><date date-type="accepted"><day>19</day><month>2</month><year>2020</year></date></history><permissions><copyright-statement>© The Author(s), under exclusive licence to Springer Nature Limited 2020</copyright-statement><license license-type="OpenAccess"><license-p><bold>Open Access</bold> This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>.</license-p></license></permissions><abstract id="Abs1" abstract-type="Standfirst"><p id="Par1">The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The <italic>Coronaviridae</italic> Study Group (CSG) of the International Committee on Taxonomy of Viruses, which is responsible for developing the classification of viruses and taxon nomenclature of the family <italic>Coronaviridae</italic>, has assessed the placement of the human pathogen, tentatively named 2019-nCoV, within the <italic>Coronaviridae</italic>. Based on phylogeny, taxonomy and established practice, the CSG recognizes this virus as forming a sister clade to the prototype human and bat severe acute respiratory syndrome coronaviruses (SARS-CoVs) of the species <italic>Severe acute respiratory syndrome-related coronavirus</italic>, and designates it as SARS-CoV-2. In order to facilitate communication, the CSG proposes to use the following naming convention for individual isolates: SARS-CoV-2/host/location/isolate/date. While the full spectrum of clinical manifestations associated with SARS-CoV-2 infections in humans remains to be determined, the independent zoonotic transmission of SARS-CoV and SARS-CoV-2 highlights the need for studying viruses at the species level to complement research focused on individual pathogenic viruses of immediate significance. This will improve our understanding of virus–host interactions in an ever-changing environment and enhance our preparedness for future outbreaks.</p></abstract><kwd-group kwd-group-type="npg-subject"><title>Subject terms</title><kwd>Microbiology</kwd><kwd>Biodiversity</kwd><kwd>Diseases</kwd><kwd>Virology</kwd><kwd>Applied microbiology</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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