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The Laboratory Diagnosis of Severe Acute Respiratory Syndrome: Emerging Laboratory Tests for an Emerging Pathogen

Identifieur interne : 001651 ( Pmc/Corpus ); précédent : 001650; suivant : 001652

The Laboratory Diagnosis of Severe Acute Respiratory Syndrome: Emerging Laboratory Tests for an Emerging Pathogen

Auteurs : Susan E. Richardson ; Raymond Tellier ; James Mahony

Source :

RBID : PMC:1904415

Abstract

The 2003 pandemic of Severe Acute Respiratory Syndrome (SARS) profiled the ability of modern diagnostic microbiology and molecular biology to identify, isolate and characterize, within weeks, a previously unknown viral infectious pathogen. The culprit, SARS coronavirus (SARS-CoV), was detected in patient specimens by traditional cell culture using an unusual cell line for respiratory viruses, Vero E6, and by reverse transcriptase polymerase chain reaction (RT-PCR) targeting the polymerase 1 B region of the genome. In addition, serologic assays were rapidly developed, and the genome of this large virus was sequenced within one month of its spread to North America. At the present time, diagnostics have progressed to the point that RT-PCR has a sensitivity approaching 80% within the first few days of onset of illness, while serology has a sensitivity close to 100% on convalescent sera taken >21 days after illness onset. Viral culture remains a method confined to biosafety level III laboratories. The specificity of RT-PCR and serology remains to be conclusively defined, but in most studies to date seems to be >90%. Serologic cross-reactivity with human coronaviruses causing the common cold may be a problem with some serologic assays. The early development of SARS-CoV diagnostics is now being replaced by refinement and optimization of these assays. Although at the present time we do not have a test that will definitively rule in or rule out SARS at the time of initial presentation of a patient with a respiratory infection, modifications of existing assays will hopefully result in our ability to make this diagnosis with a high degree of accuracy in the future.


Url:
PubMed: 18458711
PubMed Central: 1904415

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PMC:1904415

Le document en format XML

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<title xml:lang="en">The Laboratory Diagnosis of Severe Acute Respiratory Syndrome: Emerging Laboratory Tests for an Emerging Pathogen</title>
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<name sortKey="Richardson, Susan E" sort="Richardson, Susan E" uniqKey="Richardson S" first="Susan E." last="Richardson">Susan E. Richardson</name>
<affiliation>
<nlm:aff id="af1-cbr25_2p133"> The Hospital for Sick Children, Toronto, Canada</nlm:aff>
</affiliation>
<affiliation>
<nlm:aff id="af2-cbr25_2p133"> The University of Toronto, Toronto, Canada</nlm:aff>
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<author>
<name sortKey="Tellier, Raymond" sort="Tellier, Raymond" uniqKey="Tellier R" first="Raymond" last="Tellier">Raymond Tellier</name>
<affiliation>
<nlm:aff id="af1-cbr25_2p133"> The Hospital for Sick Children, Toronto, Canada</nlm:aff>
</affiliation>
<affiliation>
<nlm:aff id="af2-cbr25_2p133"> The University of Toronto, Toronto, Canada</nlm:aff>
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<author>
<name sortKey="Mahony, James" sort="Mahony, James" uniqKey="Mahony J" first="James" last="Mahony">James Mahony</name>
<affiliation>
<nlm:aff id="af3-cbr25_2p133"> St. Joseph's Hospital, Hamilton, Canada</nlm:aff>
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<affiliation>
<nlm:aff id="af4-cbr25_2p133"> McMaster University, Hamilton, Canada</nlm:aff>
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<nlm:aff id="af1-cbr25_2p133"> The Hospital for Sick Children, Toronto, Canada</nlm:aff>
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<nlm:aff id="af2-cbr25_2p133"> The University of Toronto, Toronto, Canada</nlm:aff>
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<name sortKey="Mahony, James" sort="Mahony, James" uniqKey="Mahony J" first="James" last="Mahony">James Mahony</name>
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<nlm:aff id="af3-cbr25_2p133"> St. Joseph's Hospital, Hamilton, Canada</nlm:aff>
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<nlm:aff id="af4-cbr25_2p133"> McMaster University, Hamilton, Canada</nlm:aff>
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<title level="j">The Clinical Biochemist Reviews</title>
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<p>The 2003 pandemic of Severe Acute Respiratory Syndrome (SARS) profiled the ability of modern diagnostic microbiology and molecular biology to identify, isolate and characterize, within weeks, a previously unknown viral infectious pathogen. The culprit, SARS coronavirus (SARS-CoV), was detected in patient specimens by traditional cell culture using an unusual cell line for respiratory viruses, Vero E6, and by reverse transcriptase polymerase chain reaction (RT-PCR) targeting the polymerase 1 B region of the genome. In addition, serologic assays were rapidly developed, and the genome of this large virus was sequenced within one month of its spread to North America. At the present time, diagnostics have progressed to the point that RT-PCR has a sensitivity approaching 80% within the first few days of onset of illness, while serology has a sensitivity close to 100% on convalescent sera taken >21 days after illness onset. Viral culture remains a method confined to biosafety level III laboratories. The specificity of RT-PCR and serology remains to be conclusively defined, but in most studies to date seems to be >90%. Serologic cross-reactivity with human coronaviruses causing the common cold may be a problem with some serologic assays. The early development of SARS-CoV diagnostics is now being replaced by refinement and optimization of these assays. Although at the present time we do not have a test that will definitively rule in or rule out SARS at the time of initial presentation of a patient with a respiratory infection, modifications of existing assays will hopefully result in our ability to make this diagnosis with a high degree of accuracy in the future.</p>
</div>
</front>
</TEI>
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<pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Clin Biochem Rev</journal-id>
<journal-title>The Clinical Biochemist Reviews</journal-title>
<issn pub-type="ppub">0159-8090</issn>
<publisher>
<publisher-name>The Australian Association of Clinical Biochemists</publisher-name>
</publisher>
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<article-meta>
<article-id pub-id-type="pmid">18458711</article-id>
<article-id pub-id-type="pmc">1904415</article-id>
<article-id pub-id-type="publisher-id">cbr25_2p133</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Review Article</subject>
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</article-categories>
<title-group>
<article-title>The Laboratory Diagnosis of Severe Acute Respiratory Syndrome: Emerging Laboratory Tests for an Emerging Pathogen</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Richardson</surname>
<given-names>Susan E.</given-names>
</name>
<xref ref-type="aff" rid="af1-cbr25_2p133">1</xref>
<xref ref-type="aff" rid="af2-cbr25_2p133">2</xref>
<xref ref-type="corresp" rid="c1-cbr25_2p133">*</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tellier</surname>
<given-names>Raymond</given-names>
</name>
<xref ref-type="aff" rid="af1-cbr25_2p133">1</xref>
<xref ref-type="aff" rid="af2-cbr25_2p133">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mahony</surname>
<given-names>James</given-names>
</name>
<xref ref-type="aff" rid="af3-cbr25_2p133">3</xref>
<xref ref-type="aff" rid="af4-cbr25_2p133">4</xref>
</contrib>
</contrib-group>
<aff id="af1-cbr25_2p133">
<label>1</label>
The Hospital for Sick Children, Toronto, Canada</aff>
<aff id="af2-cbr25_2p133">
<label>2</label>
The University of Toronto, Toronto, Canada</aff>
<aff id="af3-cbr25_2p133">
<label>3</label>
St. Joseph's Hospital, Hamilton, Canada</aff>
<aff id="af4-cbr25_2p133">
<label>4</label>
McMaster University, Hamilton, Canada</aff>
<author-notes>
<corresp id="c1-cbr25_2p133">*For correspondence: Dr. Susan Richardson e-mail:
<email>susan.richardson@sickkids.ca</email>
</corresp>
</author-notes>
<pub-date pub-type="ppub">
<month>5</month>
<year>2004</year>
</pub-date>
<volume>25</volume>
<issue>2</issue>
<fpage>133</fpage>
<lpage>142</lpage>
<copyright-statement>The contents of articles or advertisements in The Clinical Biochemist – Reviews are not to be construed as official statements, evaluations or endorsements by the AACB, its official bodies or its agents. Statements of opinion in AACB publications are those of the contributors. Print Post Approved - PP255003/01665. Copyright © 2005 The Australasian Association of Clinical Biochemists Inc. No literary matter in The Clinical Biochemist – Reviews is to be reproduced, stored in a retrieval system or transmitted in any form by electronic or mechanical means, photocopying or recording, without permission. Requests to do so should be addressed to the Editor. ISSN 0159 – 8090</copyright-statement>
<copyright-year>2004</copyright-year>
<abstract>
<p>The 2003 pandemic of Severe Acute Respiratory Syndrome (SARS) profiled the ability of modern diagnostic microbiology and molecular biology to identify, isolate and characterize, within weeks, a previously unknown viral infectious pathogen. The culprit, SARS coronavirus (SARS-CoV), was detected in patient specimens by traditional cell culture using an unusual cell line for respiratory viruses, Vero E6, and by reverse transcriptase polymerase chain reaction (RT-PCR) targeting the polymerase 1 B region of the genome. In addition, serologic assays were rapidly developed, and the genome of this large virus was sequenced within one month of its spread to North America. At the present time, diagnostics have progressed to the point that RT-PCR has a sensitivity approaching 80% within the first few days of onset of illness, while serology has a sensitivity close to 100% on convalescent sera taken >21 days after illness onset. Viral culture remains a method confined to biosafety level III laboratories. The specificity of RT-PCR and serology remains to be conclusively defined, but in most studies to date seems to be >90%. Serologic cross-reactivity with human coronaviruses causing the common cold may be a problem with some serologic assays. The early development of SARS-CoV diagnostics is now being replaced by refinement and optimization of these assays. Although at the present time we do not have a test that will definitively rule in or rule out SARS at the time of initial presentation of a patient with a respiratory infection, modifications of existing assays will hopefully result in our ability to make this diagnosis with a high degree of accuracy in the future.</p>
</abstract>
</article-meta>
</front>
<floats-wrap>
<table-wrap id="t1-cbr25_2p133" position="float">
<label>Table</label>
<caption>
<p>Laboratory Tests for Diagnosing SARS-CoV infection.</p>
</caption>
<table frame="box" rules="cols">
<thead>
<tr>
<th align="left" rowspan="1" colspan="1"></th>
<th align="left" rowspan="1" colspan="1">Assay</th>
<th align="left" rowspan="1" colspan="1">Performance</th>
<th align="left" rowspan="1" colspan="1">Limitation</th>
<th align="left" rowspan="1" colspan="1">Comments</th>
</tr>
<tr>
<th colspan="5" align="left" rowspan="1">
<hr></hr>
</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1">
<bold>Virus</bold>
</td>
<td align="left" rowspan="1" colspan="1">Culture
<break></break>
Electron microscopy</td>
<td align="left" rowspan="1" colspan="1">Low sensitivity
<break></break>
Low sensitivity</td>
<td align="left" rowspan="1" colspan="1">Level III laboratory
<break></break>
Experienced technologist</td>
<td align="left" rowspan="1" colspan="1">Not useful for routine diagnosis
<break></break>
Not useful for routine diagnosis</td>
</tr>
<tr>
<td colspan="5" align="left" rowspan="1">
<hr></hr>
</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">
<bold>Antibody</bold>
</td>
<td align="left" rowspan="1" colspan="1">ELISA</td>
<td align="left" rowspan="1" colspan="1">Can detect IgA, IgM, IgG</td>
<td align="left" rowspan="1" colspan="1">Earliest seroconversion usually week two</td>
<td align="left" rowspan="1" colspan="1">Useful for confirming cases that are PCR negative. Cross reactivity with respiratory coronaviruses</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"></td>
<td align="left" rowspan="1" colspan="1">Western Blot (WB)</td>
<td align="left" rowspan="1" colspan="1">Can detect IgA, IgM, IgG. Uses viral lysate, recombinant proteins, or synthetic peptides.</td>
<td align="left" rowspan="1" colspan="1">Labour intensive, expensive</td>
<td align="left" rowspan="1" colspan="1">Useful for confirming cases. Synthetic peptides offer improved specificity</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"></td>
<td align="left" rowspan="1" colspan="1">Immunodot</td>
<td align="left" rowspan="1" colspan="1">Detects IgA, IgM, IgG</td>
<td align="left" rowspan="1" colspan="1">Inexpensive, rapid</td>
<td align="left" rowspan="1" colspan="1">Equivalent sensitivity but more rapid and less expensive than WB</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"></td>
<td align="left" rowspan="1" colspan="1">IFA
<xref ref-type="table-fn" rid="tfn1-cbr25_2p133">a</xref>
</td>
<td align="left" rowspan="1" colspan="1">Detects IgM, IgG</td>
<td align="left" rowspan="1" colspan="1">Requires fluorescent microscope</td>
<td align="left" rowspan="1" colspan="1">Compares well with WB and Immunodot, but more expensive than both.</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"></td>
<td align="left" rowspan="1" colspan="1">Neutralization</td>
<td align="left" rowspan="1" colspan="1">Reference standard for antibody, unknown sensitivity</td>
<td align="left" rowspan="1" colspan="1">Labour intensive, expensive Requires level III laboratory</td>
<td align="left" rowspan="1" colspan="1">Reference test only.</td>
</tr>
<tr>
<td colspan="5" align="left" rowspan="1">
<hr></hr>
</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">
<bold>RNA</bold>
</td>
<td align="left" rowspan="1" colspan="1">RT-PCR
<xref ref-type="table-fn" rid="tfn2-cbr25_2p133">b</xref>
</td>
<td align="left" rowspan="1" colspan="1">Highly sensitive, several targets including polymerase and nucleocapsid gene. Consensus and SARS-specific primers.</td>
<td align="left" rowspan="1" colspan="1">Low sensitivity for NP, good sensitivity for stools.</td>
<td align="left" rowspan="1" colspan="1">Preferred test for diagnosis. Positive results should be confirmed with second target and/or specimen/specimen site.</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn1-cbr25_2p133">
<label>a</label>
<p>Euroimmune IF test from Hamburg Germany.</p>
</fn>
<fn id="tfn2-cbr25_2p133">
<label>b</label>
<p>No Federal Drug Administration approved tests. Commercial tests becoming available include Artus HPA™ Real Art Coronavirus (Hamburg, Germany), Coronavirus RT-PCR Kit (Roche, Montreal, Canada), GeneCode SARS Coronavirus POL and NP (Eragen Biosciences, Madison, WI, USA)</p>
</fn>
</table-wrap-foot>
</table-wrap>
</floats-wrap>
</pmc>
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