Molecular Epidemiology of SARS-associated Coronavirus, Beijing
Identifieur interne : 001299 ( Pmc/Checkpoint ); précédent : 001298; suivant : 001300Molecular Epidemiology of SARS-associated Coronavirus, Beijing
Auteurs : Wei Liu [République populaire de Chine] ; Fang Tang [République populaire de Chine] ; Arnaud Fontanet [France] ; Lin Zhan [République populaire de Chine] ; Tian-Bao Wang [République populaire de Chine] ; Pan-He Zhang [République populaire de Chine] ; Yi-He Luan [République populaire de Chine] ; Chao-Yang Cao [République populaire de Chine] ; Qiu-Min Zhao [République populaire de Chine] ; Xiao-Ming Wu [République populaire de Chine] ; Zhong-Tao Xin [République populaire de Chine] ; Shu-Qing Zuo [République populaire de Chine] ; Laurence Baril [France] ; Astrid Vabret [France] ; Yi-Ming Shao [République populaire de Chine] ; Hong Yang [République populaire de Chine] ; Wu-Chun Cao [République populaire de Chine]Source :
- Emerging Infectious Diseases [ 1080-6040 ] ; 2005.
Abstract
Viral adaptation to the host may be occurring under selective immune pressure.
Url:
DOI: 10.3201/eid1109.040773
PubMed: 16229772
PubMed Central: 3310602
Affiliations:
- France, République populaire de Chine
- Basse-Normandie, Région Normandie, Île-de-France
- Caen, Paris, Pékin
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Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Xin, Zhong Tao" sort="Xin, Zhong Tao" uniqKey="Xin Z" first="Zhong-Tao" last="Xin">Zhong-Tao Xin</name><affiliation wicri:level="3"><nlm:aff id="aff4">Beijing Institute of Basic Medical Sciences, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Basic Medical Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zuo, Shu Qing" sort="Zuo, Shu Qing" uniqKey="Zuo S" first="Shu-Qing" last="Zuo">Shu-Qing Zuo</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de 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Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Fang" sort="Tang, Fang" uniqKey="Tang F" first="Fang" last="Tang">Fang Tang</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Fontanet, Arnaud" sort="Fontanet, Arnaud" uniqKey="Fontanet A" first="Arnaud" last="Fontanet">Arnaud Fontanet</name><affiliation wicri:level="3"><nlm:aff id="aff2">Institut Pasteur, Paris, France;</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Zhan, Lin" sort="Zhan, Lin" uniqKey="Zhan L" first="Lin" last="Zhan">Lin Zhan</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Tian Bao" sort="Wang, Tian Bao" uniqKey="Wang T" first="Tian-Bao" last="Wang">Tian-Bao Wang</name><affiliation wicri:level="3"><nlm:aff id="aff3">Beijing Armed Force Hospital, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Armed Force Hospital, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Pan He" sort="Zhang, Pan He" uniqKey="Zhang P" first="Pan-He" last="Zhang">Pan-He Zhang</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Luan, Yi He" sort="Luan, Yi He" uniqKey="Luan Y" first="Yi-He" last="Luan">Yi-He Luan</name><affiliation wicri:level="3"><nlm:aff id="aff3">Beijing Armed Force Hospital, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Armed Force Hospital, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Cao, Chao Yang" sort="Cao, Chao Yang" uniqKey="Cao C" first="Chao-Yang" last="Cao">Chao-Yang Cao</name><affiliation wicri:level="3"><nlm:aff id="aff3">Beijing Armed Force Hospital, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Armed Force Hospital, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhao, Qiu Min" sort="Zhao, Qiu Min" uniqKey="Zhao Q" first="Qiu-Min" last="Zhao">Qiu-Min Zhao</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wu, Xiao Ming" sort="Wu, Xiao Ming" uniqKey="Wu X" first="Xiao-Ming" last="Wu">Xiao-Ming Wu</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Xin, Zhong Tao" sort="Xin, Zhong Tao" uniqKey="Xin Z" first="Zhong-Tao" last="Xin">Zhong-Tao Xin</name><affiliation wicri:level="3"><nlm:aff id="aff4">Beijing Institute of Basic Medical Sciences, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Basic Medical Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zuo, Shu Qing" sort="Zuo, Shu Qing" uniqKey="Zuo S" first="Shu-Qing" last="Zuo">Shu-Qing Zuo</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Baril, Laurence" sort="Baril, Laurence" uniqKey="Baril L" first="Laurence" last="Baril">Laurence Baril</name><affiliation wicri:level="3"><nlm:aff id="aff2">Institut Pasteur, Paris, France;</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name><affiliation wicri:level="3"><nlm:aff id="aff5">Caen University, Caen, France;</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Caen University, Caen</wicri:regionArea><placeName><region type="region">Région Normandie</region><region type="old region">Basse-Normandie</region><settlement type="city">Caen</settlement></placeName></affiliation></author><author><name sortKey="Shao, Yi Ming" sort="Shao, Yi Ming" uniqKey="Shao Y" first="Yi-Ming" last="Shao">Yi-Ming Shao</name><affiliation wicri:level="3"><nlm:aff id="aff6">Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Chinese Center for Disease Control and Prevention, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yang, Hong" sort="Yang, Hong" uniqKey="Yang H" first="Hong" last="Yang">Hong Yang</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Cao, Wu Chun" sort="Cao, Wu Chun" uniqKey="Cao W" first="Wu-Chun" last="Cao">Wu-Chun Cao</name><affiliation wicri:level="3"><nlm:aff id="aff1">Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Institute of Microbiology and Epidemiology, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Emerging Infectious Diseases</title><idno type="ISSN">1080-6040</idno><idno type="eISSN">1080-6059</idno><imprint><date when="2005">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Viral adaptation to the host may be occurring under selective immune pressure.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Emerg Infect Dis</journal-id><journal-id journal-id-type="iso-abbrev">Emerging Infect. Dis</journal-id><journal-id journal-id-type="publisher-id">EID</journal-id><journal-title-group><journal-title>Emerging Infectious Diseases</journal-title></journal-title-group><issn pub-type="ppub">1080-6040</issn><issn pub-type="epub">1080-6059</issn><publisher><publisher-name>Centers for Disease Control and Prevention</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">16229772</article-id><article-id pub-id-type="pmc">3310602</article-id><article-id pub-id-type="publisher-id">04-0773</article-id><article-id pub-id-type="doi">10.3201/eid1109.040773</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research</subject></subj-group></article-categories><title-group><article-title>Molecular Epidemiology of SARS-associated Coronavirus, Beijing</article-title><alt-title alt-title-type="running-head">Molecular Epidemiology of SARS-associated Coronavirus</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Wei</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Tang</surname><given-names>Fang</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Fontanet</surname><given-names>Arnaud</given-names></name><xref ref-type="aff" rid="aff2">†</xref></contrib><contrib contrib-type="author"><name><surname>Zhan</surname><given-names>Lin</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Tian-Bao</given-names></name><xref ref-type="aff" rid="aff3">‡</xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Pan-He</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Luan</surname><given-names>Yi-He</given-names></name><xref ref-type="aff" rid="aff3">‡</xref></contrib><contrib contrib-type="author"><name><surname>Cao</surname><given-names>Chao-Yang</given-names></name><xref ref-type="aff" rid="aff3">‡</xref></contrib><contrib contrib-type="author"><name><surname>Zhao</surname><given-names>Qiu-Min</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Xiao-Ming</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Xin</surname><given-names>Zhong-Tao</given-names></name><xref ref-type="aff" rid="aff4">§</xref></contrib><contrib contrib-type="author"><name><surname>Zuo</surname><given-names>Shu-Qing</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author"><name><surname>Baril</surname><given-names>Laurence</given-names></name><xref ref-type="aff" rid="aff2">†</xref></contrib><contrib contrib-type="author"><name><surname>Vabret</surname><given-names>Astrid</given-names></name><xref ref-type="aff" rid="aff5">¶</xref></contrib><contrib contrib-type="author"><name><surname>Shao</surname><given-names>Yi-Ming</given-names></name><xref ref-type="aff" rid="aff6">#</xref></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Hong</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Cao</surname><given-names>Wu-Chun</given-names></name><xref ref-type="aff" rid="aff1">*</xref></contrib><aff id="aff1"><label>*</label>Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China;</aff><aff id="aff2"><label>†</label>Institut Pasteur, Paris, France;</aff><aff id="aff3"><label>‡</label>Beijing Armed Force Hospital, Beijing, People's Republic of China;</aff><aff id="aff4"><label>§</label>Beijing Institute of Basic Medical Sciences, Beijing, People's Republic of China;</aff><aff id="aff5"><label>¶</label>Caen University, Caen, France;</aff><aff id="aff6"><label>#</label>Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China</aff></contrib-group><author-notes><corresp id="cor1">Address for correspondence: Wu-Chun Cao, Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity, P.R. China; fax: 86-10-63812060; email: <email xlink:href="caowc@nic.bmi.ac.cn">caowc@nic.bmi.ac.cn</email></corresp></author-notes><pub-date pub-type="ppub"><month>9</month><year>2005</year></pub-date><volume>11</volume><issue>9</issue><fpage>1420</fpage><lpage>1424</lpage><abstract abstract-type="toc"><p>Viral adaptation to the host may be occurring under selective immune pressure.</p></abstract><abstract><p>Single nucleotide variations (SNVs) at 5 loci (17564, 21721, 22222, 23823, and 27827) were used to define the molecular epidemiologic characteristics of severe acute respiratory syndrome–associated coronavirus (SARS-CoV) from Beijing patients. Five fragments targeted at the SNV loci were amplified directly from clinical samples by using reverse transcription–polymerase chain reaction (RT-PCR), before sequencing the amplified products. Analyses of 45 sequences obtained from 29 patients showed that the GGCTC motif dominated among samples collected from March to early April 2003; the TGTTT motif predominanted afterwards. The switch from GGCTC to TGTTT was observed among patients belonging to the same cluster, which ruled out the possibility of the coincidental superposition of 2 epidemics running in parallel in Beijing. The Beijing isolates underwent the same change pattern reported from Guangdong Province. The same series of mutations occurring in separate geographic locations and at different times suggests a dominant process of viral adaptation to the host.</p></abstract><kwd-group kwd-group-type="author"><title>Keywords: </title><kwd>severe acute respiratory syndrome</kwd><kwd>molecular epidemiology</kwd><kwd>single nucleotide variation</kwd><kwd>RT-PCR, research</kwd></kwd-group></article-meta></front></pmc><affiliations><list><country><li>France</li><li>République populaire de Chine</li></country><region><li>Basse-Normandie</li><li>Région Normandie</li><li>Île-de-France</li></region><settlement><li>Caen</li><li>Paris</li><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Wei" sort="Liu, Wei" uniqKey="Liu W" first="Wei" last="Liu">Wei Liu</name></noRegion><name sortKey="Cao, Chao Yang" sort="Cao, Chao Yang" uniqKey="Cao C" first="Chao-Yang" last="Cao">Chao-Yang Cao</name><name sortKey="Cao, Wu Chun" sort="Cao, Wu Chun" uniqKey="Cao W" first="Wu-Chun" last="Cao">Wu-Chun Cao</name><name sortKey="Luan, Yi He" sort="Luan, Yi He" uniqKey="Luan Y" first="Yi-He" last="Luan">Yi-He Luan</name><name sortKey="Shao, Yi Ming" sort="Shao, Yi Ming" uniqKey="Shao Y" first="Yi-Ming" last="Shao">Yi-Ming Shao</name><name sortKey="Tang, Fang" sort="Tang, Fang" uniqKey="Tang F" first="Fang" last="Tang">Fang Tang</name><name sortKey="Wang, Tian Bao" sort="Wang, Tian Bao" uniqKey="Wang T" first="Tian-Bao" last="Wang">Tian-Bao Wang</name><name sortKey="Wu, Xiao Ming" sort="Wu, Xiao Ming" uniqKey="Wu X" first="Xiao-Ming" last="Wu">Xiao-Ming Wu</name><name sortKey="Xin, Zhong Tao" sort="Xin, Zhong Tao" uniqKey="Xin Z" first="Zhong-Tao" last="Xin">Zhong-Tao Xin</name><name sortKey="Yang, Hong" sort="Yang, Hong" uniqKey="Yang H" first="Hong" last="Yang">Hong Yang</name><name sortKey="Zhan, Lin" sort="Zhan, Lin" uniqKey="Zhan L" first="Lin" last="Zhan">Lin Zhan</name><name sortKey="Zhang, Pan He" sort="Zhang, Pan He" uniqKey="Zhang P" first="Pan-He" last="Zhang">Pan-He Zhang</name><name sortKey="Zhao, Qiu Min" sort="Zhao, Qiu Min" uniqKey="Zhao Q" first="Qiu-Min" last="Zhao">Qiu-Min Zhao</name><name sortKey="Zuo, Shu Qing" sort="Zuo, Shu Qing" uniqKey="Zuo S" first="Shu-Qing" last="Zuo">Shu-Qing Zuo</name></country><country name="France"><region name="Île-de-France"><name sortKey="Fontanet, Arnaud" sort="Fontanet, Arnaud" uniqKey="Fontanet A" first="Arnaud" last="Fontanet">Arnaud Fontanet</name></region><name sortKey="Baril, Laurence" sort="Baril, Laurence" uniqKey="Baril L" first="Laurence" last="Baril">Laurence Baril</name><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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