Identification of SARS-like coronaviruses in horseshoe bats (Rhinolophus hipposideros) in Slovenia
Identifieur interne : 000C24 ( Pmc/Checkpoint ); précédent : 000C23; suivant : 000C25Identification of SARS-like coronaviruses in horseshoe bats (Rhinolophus hipposideros) in Slovenia
Auteurs : Danijela Rihtari [Slovénie] ; Peter Hostnik [Slovénie] ; Andrej Steyer [Slovénie] ; Jože Grom [Slovénie] ; Ivan Toplak [Slovénie]Source :
- Archives of Virology [ 0304-8608 ] ; 2010.
Abstract
Bats have been identified as a natural reservoir for an increasing number of emerging zoonotic viruses, such as Hendra virus, Nipah virus, Ebola virus, Marburg virus, rabies and other lyssaviruses. Recently, a large number of viruses closely related to members of the genus
Url:
DOI: 10.1007/s00705-010-0612-5
PubMed: 20217155
PubMed Central: 7087122
Affiliations:
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type="pmid">20217155</idno><idno type="pmc">7087122</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087122</idno><idno type="RBID">PMC:7087122</idno><idno type="doi">10.1007/s00705-010-0612-5</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000265</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000265</idno><idno type="wicri:Area/Pmc/Curation">000265</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000265</idno><idno type="wicri:Area/Pmc/Checkpoint">000C24</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000C24</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Identification of SARS-like coronaviruses in horseshoe bats (<italic>Rhinolophus hipposideros</italic>) in Slovenia</title><author><name sortKey="Rihtari, Danijela" sort="Rihtari, Danijela" uniqKey="Rihtari D" first="Danijela" last="Rihtari">Danijela Rihtari</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Virology Unit, Veterinary Faculty, Institute of Microbiology and Parasitology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Gerbičeva 60, 1115 Ljubljana, Slovenia</nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Gerbičeva 60, 1115 Ljubljana</wicri:regionArea><wicri:noRegion>1115 Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Hostnik, Peter" sort="Hostnik, Peter" uniqKey="Hostnik P" first="Peter" last="Hostnik">Peter Hostnik</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Virology Unit, Veterinary Faculty, Institute of Microbiology and Parasitology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Gerbičeva 60, 1115 Ljubljana, Slovenia</nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Gerbičeva 60, 1115 Ljubljana</wicri:regionArea><wicri:noRegion>1115 Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Steyer, Andrej" sort="Steyer, Andrej" uniqKey="Steyer A" first="Andrej" last="Steyer">Andrej Steyer</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Faculty of Medicine, Institute of Microbiology and Immunology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Zaloška 4, 1104 Ljubljana, Slovenia</nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Zaloška 4, 1104 Ljubljana</wicri:regionArea><wicri:noRegion>1104 Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Grom, Joze" sort="Grom, Joze" uniqKey="Grom J" first="Jože" last="Grom">Jože Grom</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Virology Unit, Veterinary Faculty, Institute of Microbiology and Parasitology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Gerbičeva 60, 1115 Ljubljana, Slovenia</nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Gerbičeva 60, 1115 Ljubljana</wicri:regionArea><wicri:noRegion>1115 Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Toplak, Ivan" sort="Toplak, Ivan" uniqKey="Toplak I" first="Ivan" last="Toplak">Ivan Toplak</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Virology Unit, Veterinary Faculty, Institute of Microbiology and Parasitology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Gerbičeva 60, 1115 Ljubljana, Slovenia</nlm:aff><country xml:lang="fr">Slovénie</country><wicri:regionArea>Gerbičeva 60, 1115 Ljubljana</wicri:regionArea><wicri:noRegion>1115 Ljubljana</wicri:noRegion></affiliation></author></analytic><series><title level="j">Archives of Virology</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Bats have been identified as a natural reservoir for an increasing number of emerging zoonotic viruses, such as Hendra virus, Nipah virus, Ebola virus, Marburg virus, rabies and other lyssaviruses. Recently, a large number of viruses closely related to members of the genus <italic>Coronavirus</italic> have been associated with severe acute respiratory syndrome (SARS) and detected in bat species. In this study, samples were collected from 106 live bats of seven different bat species from 27 different locations in Slovenia. Coronaviruses were detected by RT-PCR in 14 out of 36 horseshoe bat (<italic>Rhinolophus hipposideros</italic>) fecal samples, with 38.8% virus prevalence. Sequence analysis of a 405-nucleotide region of the highly conserved RNA polymerase gene (pol) showed that all coronaviruses detected in this study are genetically closely related, with 99.5–100% nucleotide identity, and belong to group 2 of the coronaviruses. The most closely related virus sequence in GenBank was SARS bat isolate Rp3/2004 (DQ071615) within the SARS-like CoV cluster, sharing 85% nucleotide identity and 95.6% amino acid identity. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Arch Virol</journal-id><journal-id journal-id-type="iso-abbrev">Arch. Virol</journal-id><journal-title-group><journal-title>Archives of Virology</journal-title></journal-title-group><issn pub-type="ppub">0304-8608</issn><issn pub-type="epub">1432-8798</issn><publisher><publisher-name>Springer Vienna</publisher-name><publisher-loc>Vienna</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">20217155</article-id><article-id pub-id-type="pmc">7087122</article-id><article-id pub-id-type="publisher-id">612</article-id><article-id pub-id-type="doi">10.1007/s00705-010-0612-5</article-id><article-categories><subj-group subj-group-type="heading"><subject>Original Article</subject></subj-group></article-categories><title-group><article-title>Identification of SARS-like coronaviruses in horseshoe bats (<italic>Rhinolophus hipposideros</italic>) in Slovenia</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Rihtarič</surname><given-names>Danijela</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Hostnik</surname><given-names>Peter</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Steyer</surname><given-names>Andrej</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Grom</surname><given-names>Jože</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Toplak</surname><given-names>Ivan</given-names></name><address><phone>+386-1-4779180</phone><fax>+386-1-4779352</fax><email>ivan.toplak@vf.uni-lj.si</email></address><xref ref-type="aff" rid="Aff1">1</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Virology Unit, Veterinary Faculty, Institute of Microbiology and Parasitology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Gerbičeva 60, 1115 Ljubljana, Slovenia</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="GRID">grid.8954.0</institution-id><institution-id institution-id-type="ISNI">0000000107216013</institution-id><institution>Faculty of Medicine, Institute of Microbiology and Immunology,</institution><institution>University of Ljubljana,</institution></institution-wrap>Zaloška 4, 1104 Ljubljana, Slovenia</aff></contrib-group><pub-date pub-type="epub"><day>10</day><month>3</month><year>2010</year></pub-date><pub-date pub-type="ppub"><year>2010</year></pub-date><volume>155</volume><issue>4</issue><fpage>507</fpage><lpage>514</lpage><history><date date-type="received"><day>22</day><month>9</month><year>2009</year></date><date date-type="accepted"><day>4</day><month>1</month><year>2010</year></date></history><permissions><copyright-statement>© Springer-Verlag 2010</copyright-statement><license><license-p>This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.</license-p></license></permissions><abstract id="Abs1"><p>Bats have been identified as a natural reservoir for an increasing number of emerging zoonotic viruses, such as Hendra virus, Nipah virus, Ebola virus, Marburg virus, rabies and other lyssaviruses. Recently, a large number of viruses closely related to members of the genus <italic>Coronavirus</italic> have been associated with severe acute respiratory syndrome (SARS) and detected in bat species. In this study, samples were collected from 106 live bats of seven different bat species from 27 different locations in Slovenia. Coronaviruses were detected by RT-PCR in 14 out of 36 horseshoe bat (<italic>Rhinolophus hipposideros</italic>) fecal samples, with 38.8% virus prevalence. Sequence analysis of a 405-nucleotide region of the highly conserved RNA polymerase gene (pol) showed that all coronaviruses detected in this study are genetically closely related, with 99.5–100% nucleotide identity, and belong to group 2 of the coronaviruses. The most closely related virus sequence in GenBank was SARS bat isolate Rp3/2004 (DQ071615) within the SARS-like CoV cluster, sharing 85% nucleotide identity and 95.6% amino acid identity. The potential risk of a new group of bat coronaviruses as a reservoir for human infections is highly suspected, and further molecular epidemiologic studies of these bat coronaviruses are needed.</p></abstract><kwd-group xml:lang="en"><title>Keywords</title><kwd>Severe Acute Respiratory Syndrome</kwd><kwd>Porcine Epidemic Diarrhea Virus</kwd><kwd>Severe Acute Respiratory Syndrome</kwd><kwd>Marburg Virus</kwd><kwd>Feline Infectious Peritonitis Virus</kwd></kwd-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© Springer-Verlag 2010</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>Slovénie</li></country></list><tree><country name="Slovénie"><noRegion><name sortKey="Rihtari, Danijela" sort="Rihtari, Danijela" uniqKey="Rihtari D" first="Danijela" last="Rihtari">Danijela Rihtari</name></noRegion><name sortKey="Grom, Joze" sort="Grom, Joze" uniqKey="Grom J" first="Jože" last="Grom">Jože Grom</name><name sortKey="Hostnik, Peter" sort="Hostnik, Peter" uniqKey="Hostnik P" first="Peter" last="Hostnik">Peter Hostnik</name><name sortKey="Steyer, Andrej" sort="Steyer, Andrej" uniqKey="Steyer A" first="Andrej" last="Steyer">Andrej Steyer</name><name sortKey="Toplak, Ivan" sort="Toplak, Ivan" uniqKey="Toplak I" first="Ivan" last="Toplak">Ivan Toplak</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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