SARS-Coronavirus ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory
Identifieur interne : 000B69 ( Pmc/Checkpoint ); précédent : 000B68; suivant : 000B70SARS-Coronavirus ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory
Auteurs : Meriadeg Ar Gouilh [France, Thaïlande] ; Sébastien J. Puechmaille [Irlande (pays)] ; Jean-Paul Gonzalez [Gabon] ; Emma Teeling [Irlande (pays)] ; Pattamaporn Kittayapong [Thaïlande] ; Jean-Claude Manuguerra [France]Source :
- Infection, Genetics and Evolution [ 1567-1348 ] ; 2011.
Abstract
► Hipposideridae is underestimated in the study of coronaviruses. ► Hipposideridae harbor
Url:
DOI: 10.1016/j.meegid.2011.06.021
PubMed: 21763784
PubMed Central: 7106191
Affiliations:
- France, Gabon, Irlande (pays), Thaïlande
- Leinster, Île-de-France
- Dublin, Paris
- University College Dublin
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Puechmaille</name><affiliation wicri:level="4"><nlm:aff id="aff2">School of Biological and Environmental Sciences, University College Dublin, Dublin, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>School of Biological and Environmental Sciences, University College Dublin, Dublin</wicri:regionArea><orgName type="university">University College Dublin</orgName><placeName><settlement type="city">Dublin</settlement><region type="région" nuts="2">Leinster</region></placeName></affiliation></author><author><name sortKey="Gonzalez, Jean Paul" sort="Gonzalez, Jean Paul" uniqKey="Gonzalez J" first="Jean-Paul" last="Gonzalez">Jean-Paul Gonzalez</name><affiliation wicri:level="1"><nlm:aff id="aff3">Centre International de Recherches Médicales de Franceville, Gabon</nlm:aff><country xml:lang="fr">Gabon</country><wicri:regionArea>Centre International de Recherches Médicales de Franceville</wicri:regionArea></affiliation></author><author><name sortKey="Teeling, Emma" sort="Teeling, Emma" uniqKey="Teeling E" first="Emma" last="Teeling">Emma Teeling</name><affiliation wicri:level="4"><nlm:aff id="aff2">School of Biological and Environmental Sciences, University College Dublin, Dublin, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>School of Biological and Environmental Sciences, University College Dublin, Dublin</wicri:regionArea><orgName type="university">University College Dublin</orgName><placeName><settlement type="city">Dublin</settlement><region type="région" nuts="2">Leinster</region></placeName></affiliation></author><author><name sortKey="Kittayapong, Pattamaporn" sort="Kittayapong, Pattamaporn" uniqKey="Kittayapong P" first="Pattamaporn" last="Kittayapong">Pattamaporn Kittayapong</name><affiliation wicri:level="1"><nlm:aff id="aff4">Center of Excellence for Vectors and Vector-Borne Diseases, Mahidol University at Salaya, Nakhon Pathom, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Center of Excellence for Vectors and Vector-Borne Diseases, Mahidol University at Salaya, Nakhon Pathom</wicri:regionArea><wicri:noRegion>Nakhon Pathom</wicri:noRegion></affiliation></author><author><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name><affiliation wicri:level="3"><nlm:aff id="aff1">Institut Pasteur, CIBU, Department Infection and Epidemiology, 75724 Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, CIBU, Department Infection and Epidemiology, 75724 Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author></analytic><series><title level="j">Infection, Genetics and Evolution</title><idno type="ISSN">1567-1348</idno><idno type="eISSN">1567-7257</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p>► Hipposideridae is underestimated in the study of coronaviruses. ► Hipposideridae harbor <italic>Alphacoronavirus</italic> and <italic>Betacoronavirus</italic> in South-East Asia. ► Hipposideridae colony can host <italic>Betacoronavirus</italic> close to SARS-CoV over long period. ► BetaCoV (SARS) spill-over chain: Hipposideridae, Rhinolophidae, Carnivora, Human. ► Hipposideridae and Rhinolophidae coevolved with independent <italic>Betacoronavirus</italic> lineages.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Armstrong, K N" uniqKey="Armstrong K">K.N. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Infect Genet Evol</journal-id><journal-id journal-id-type="iso-abbrev">Infect. Genet. Evol</journal-id><journal-title-group><journal-title>Infection, Genetics and Evolution</journal-title></journal-title-group><issn pub-type="ppub">1567-1348</issn><issn pub-type="epub">1567-7257</issn><publisher><publisher-name>Elsevier B.V.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">21763784</article-id><article-id pub-id-type="pmc">7106191</article-id><article-id pub-id-type="publisher-id">S1567-1348(11)00234-6</article-id><article-id pub-id-type="doi">10.1016/j.meegid.2011.06.021</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title><italic>SARS-Coronavirus</italic> ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Gouilh</surname><given-names>Meriadeg Ar</given-names></name><email>merry@pasteur.fr</email><xref rid="aff1" ref-type="aff">a</xref><xref rid="aff4" ref-type="aff">d</xref><xref rid="cor1" ref-type="corresp">⁎</xref></contrib><contrib contrib-type="author"><name><surname>Puechmaille</surname><given-names>Sébastien J.</given-names></name><xref rid="aff2" ref-type="aff">b</xref></contrib><contrib contrib-type="author"><name><surname>Gonzalez</surname><given-names>Jean-Paul</given-names></name><xref rid="aff3" ref-type="aff">c</xref></contrib><contrib contrib-type="author"><name><surname>Teeling</surname><given-names>Emma</given-names></name><xref rid="aff2" ref-type="aff">b</xref></contrib><contrib contrib-type="author"><name><surname>Kittayapong</surname><given-names>Pattamaporn</given-names></name><xref rid="aff4" ref-type="aff">d</xref></contrib><contrib contrib-type="author"><name><surname>Manuguerra</surname><given-names>Jean-Claude</given-names></name><email>jmanugu@pasteur.fr</email><xref rid="aff1" ref-type="aff">a</xref><xref rid="cor1" ref-type="corresp">⁎</xref></contrib></contrib-group><aff id="aff1"><label>a</label>Institut Pasteur, CIBU, Department Infection and Epidemiology, 75724 Paris, France</aff><aff id="aff2"><label>b</label>School of Biological and Environmental Sciences, University College Dublin, Dublin, Ireland</aff><aff id="aff3"><label>c</label>Centre International de Recherches Médicales de Franceville, Gabon</aff><aff id="aff4"><label>d</label>Center of Excellence for Vectors and Vector-Borne Diseases, Mahidol University at Salaya, Nakhon Pathom, Thailand</aff><author-notes><corresp id="cor1"><label>⁎</label>Corresponding authors at: Institut Pasteur, CIBU, Department Infection and Epidemiology, 75015 Paris, France. Fax: +33 40613807 (M. A. Gouilh). <email>merry@pasteur.fr</email><email>jmanugu@pasteur.fr</email></corresp></author-notes><pub-date pub-type="pmc-release"><day>8</day><month>7</month><year>2011</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><month>10</month><year>2011</year></pub-date><pub-date pub-type="epub"><day>8</day><month>7</month><year>2011</year></pub-date><volume>11</volume><issue>7</issue><fpage>1690</fpage><lpage>1702</lpage><history><date date-type="received"><day>2</day><month>2</month><year>2011</year></date><date date-type="rev-recd"><day>29</day><month>6</month><year>2011</year></date><date date-type="accepted"><day>30</day><month>6</month><year>2011</year></date></history><permissions><copyright-statement>Copyright © 2011 Elsevier B.V. All rights reserved.</copyright-statement><copyright-year>2011</copyright-year><copyright-holder>Elsevier B.V.</copyright-holder><license><license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p></license></permissions><abstract abstract-type="graphical"><title>Highlights</title><p>► Hipposideridae is underestimated in the study of coronaviruses. ► Hipposideridae harbor <italic>Alphacoronavirus</italic> and <italic>Betacoronavirus</italic> in South-East Asia. ► Hipposideridae colony can host <italic>Betacoronavirus</italic> close to SARS-CoV over long period. ► BetaCoV (SARS) spill-over chain: Hipposideridae, Rhinolophidae, Carnivora, Human. ► Hipposideridae and Rhinolophidae coevolved with independent <italic>Betacoronavirus</italic> lineages.</p></abstract><abstract><p>One of the great challenges in the ecology of infectious diseases is to understand what drives the emergence of new pathogens including the relationship between viruses and their hosts. In the case of the emergence of <italic>Severe</italic><italic>Acute Respiratory Syndrome Coronavirus</italic> (SARS-CoV), several studies have shown coronavirus diversity in bats as well as the existence of SARS-CoV infection in apparently healthy bats, suggesting that bats may be a crucial host in the genesis of this disease. To elucidate the biogeographic origin of SARS-CoV and investigate the role that bats played in its emergence, we amplified coronavirus sequences from bat species captured throughout Thailand and assessed the phylogenetic relationships to each other and to other published coronavirus sequences. To this end, RdRp sequence of <italic>Coronavirinae</italic> was targeted by RT-PCR in non-invasive samples from bats collected in Thailand. Two new coronaviruses were detected in two bat species: one <italic>Betacoronavirus</italic> in <italic>Hipposideros larvatus</italic> and one <italic>Alphacoronavirus</italic> in <italic>Hipposideros</italic><italic>armiger.</italic> Interestingly, these viruses from South-East Asia are related to those previously detected in Africa (<italic>Betacoronavirus-</italic>b) or in Europe (<italic>Alphacoronavirus & Betacoronavirus</italic>-b). These findings illuminate the origin and the evolutionary history of the SARS-CoV group found in bats by pushing forward the hypothesis of a <italic>Betacoronavirus</italic> spill-over from Hipposideridae to Rhinolophidae and then from Rhinolophidae to civets and Human. All reported Betacoronaviruses-b (SARS-CoV group) of Hipposideridae and Rhinolophidae respectively cluster in two groups despite their broad geographic distribution and the sympatry of their hosts, which is in favor of an ancient and genetically independent evolution of <italic>Betacoronavirus</italic>-b clusters in these families. Moreover, despite its probable pathogenicity, we found that a <italic>Betacoronavirus</italic>-b can persistently infect a medium-sized hipposiderid bat colony. These findings illustrate the importance of the host phylogeny and the host/pathogen ecological interactions in the description and the understanding of pathogen emergence. The host’s phylogeny, biogeography and behaviour, combined with already described roles of pathogen plasticity and anthropic changes are likely to be co-factors of disease emergence. Elucidating the common ancestor of Hipposideridae and Rhinolophidae is key to understanding the evolutionary history of actual betacoronaviruses and therefore to get an insight of the deep origin of SARS-CoV.</p></abstract><kwd-group><title>Keywords</title><kwd><italic>Betacoronavirus</italic></kwd><kwd>Phylogeny</kwd><kwd>Hipposideridae</kwd><kwd>SARS-CoV</kwd><kwd>Thailand</kwd><kwd>Emergence</kwd></kwd-group></article-meta></front></pmc><affiliations><list><country><li>France</li><li>Gabon</li><li>Irlande (pays)</li><li>Thaïlande</li></country><region><li>Leinster</li><li>Île-de-France</li></region><settlement><li>Dublin</li><li>Paris</li></settlement><orgName><li>University College Dublin</li></orgName></list><tree><country name="France"><region name="Île-de-France"><name sortKey="Gouilh, Meriadeg Ar" sort="Gouilh, Meriadeg Ar" uniqKey="Gouilh M" first="Meriadeg Ar" last="Gouilh">Meriadeg Ar Gouilh</name></region><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name></country><country name="Thaïlande"><noRegion><name sortKey="Gouilh, Meriadeg Ar" sort="Gouilh, Meriadeg Ar" uniqKey="Gouilh M" first="Meriadeg Ar" last="Gouilh">Meriadeg Ar Gouilh</name></noRegion><name sortKey="Kittayapong, Pattamaporn" sort="Kittayapong, Pattamaporn" uniqKey="Kittayapong P" first="Pattamaporn" last="Kittayapong">Pattamaporn Kittayapong</name></country><country name="Irlande (pays)"><region name="Leinster"><name sortKey="Puechmaille, Sebastien J" sort="Puechmaille, Sebastien J" uniqKey="Puechmaille S" first="Sébastien J." last="Puechmaille">Sébastien J. Puechmaille</name></region><name sortKey="Teeling, Emma" sort="Teeling, Emma" uniqKey="Teeling E" first="Emma" last="Teeling">Emma Teeling</name></country><country name="Gabon"><noRegion><name sortKey="Gonzalez, Jean Paul" sort="Gonzalez, Jean Paul" uniqKey="Gonzalez J" first="Jean-Paul" last="Gonzalez">Jean-Paul Gonzalez</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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