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NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion

Identifieur interne : 000606 ( Pmc/Checkpoint ); précédent : 000605; suivant : 000607

NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion

Auteurs : Mukesh Mahajan ; Deepak Chatterjee ; Kannaian Bhuvaneswari ; Shubhadra Pillay ; Surajit Bhattacharjya

Source :

RBID : PMC:7094225

Abstract

The lethal Coronaviruses (CoVs), Severe Acute Respiratory Syndrome-associated Coronavirus (SARS-CoV) and most recently Middle East Respiratory Syndrome Coronavirus, (MERS-CoV) are serious human health hazard. A successful viral infection requires fusion between virus and host cells carried out by the surface spike glycoprotein or S protein of CoV. Current models propose that the S2 subunit of S protein assembled into a hexameric helical bundle exposing hydrophobic fusogenic peptides or fusion peptides (FPs) for membrane insertion. The N-terminus of S2 subunit of SARS-CoV reported to be active in cell fusion whereby FPs have been identified. Atomic-resolution structure of FPs derived either in model membranes or in membrane mimic environment would glean insights toward viral cell fusion mechanism. Here, we have solved 3D structure, dynamics and micelle localization of a 64-residue long fusion peptide or LFP in DPC detergent micelles by NMR methods. Micelle bound structure of LFP is elucidated by the presence of discretely folded helical and intervening loops. The C-terminus region, residues F42-Y62, displays a long hydrophobic helix, whereas the N-terminus is defined by a short amphipathic helix, residues R4-Q12. The intervening residues of LFP assume stretches of loops and helical turns. The N-terminal helix is sustained by close aromatic and aliphatic sidechain packing interactions at the non-polar face. 15N{1H}NOE studies indicated dynamical motion, at ps-ns timescale, of the helices of LFP in DPC micelles. PRE NMR showed that insertion of several regions of LFP into DPC micelle core. Together, the current study provides insights toward fusion mechanism of SARS-CoV.


Url:
DOI: 10.1016/j.bbamem.2017.10.002
PubMed: 28988778
PubMed Central: 7094225


Affiliations:


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PMC:7094225

Le document en format XML

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<p>The lethal Coronaviruses (CoVs), Severe Acute Respiratory Syndrome-associated Coronavirus (SARS-CoV) and most recently Middle East Respiratory Syndrome Coronavirus, (MERS-CoV) are serious human health hazard. A successful viral infection requires fusion between virus and host cells carried out by the surface spike glycoprotein or S protein of CoV. Current models propose that the S2 subunit of S protein assembled into a hexameric helical bundle exposing hydrophobic fusogenic peptides or fusion peptides (FPs) for membrane insertion. The N-terminus of S2 subunit of SARS-CoV reported to be active in cell fusion whereby FPs have been identified. Atomic-resolution structure of FPs derived either in model membranes or in membrane mimic environment would glean insights toward viral cell fusion mechanism. Here, we have solved 3D structure, dynamics and micelle localization of a 64-residue long fusion peptide or LFP in DPC detergent micelles by NMR methods. Micelle bound structure of LFP is elucidated by the presence of discretely folded helical and intervening loops. The C-terminus region, residues F42-Y62, displays a long hydrophobic helix, whereas the N-terminus is defined by a short amphipathic helix, residues R4-Q12. The intervening residues of LFP assume stretches of loops and helical turns. The N-terminal helix is sustained by close aromatic and aliphatic sidechain packing interactions at the non-polar face.
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<name sortKey="Mossel, E C" uniqKey="Mossel E">E.C. Mossel</name>
</author>
<author>
<name sortKey="Gallaher, W R" uniqKey="Gallaher W">W.R. Gallaher</name>
</author>
<author>
<name sortKey="Wimley, W C" uniqKey="Wimley W">W.C. Wimley</name>
</author>
<author>
<name sortKey="Peters, C J" uniqKey="Peters C">C.J. Peters</name>
</author>
<author>
<name sortKey="Wilson, R B" uniqKey="Wilson R">R.B. Wilson</name>
</author>
<author>
<name sortKey="Garry, R F" uniqKey="Garry R">R.F. Garry</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Lu, L" uniqKey="Lu L">L. Lu</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Biochim Biophys Acta Biomembr</journal-id>
<journal-id journal-id-type="iso-abbrev">Biochim Biophys Acta Biomembr</journal-id>
<journal-title-group>
<journal-title>Biochimica et Biophysica Acta. Biomembranes</journal-title>
</journal-title-group>
<issn pub-type="ppub">0005-2736</issn>
<issn pub-type="epub">1879-2642</issn>
<publisher>
<publisher-name>Elsevier B.V.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">28988778</article-id>
<article-id pub-id-type="pmc">7094225</article-id>
<article-id pub-id-type="publisher-id">S0005-2736(17)30312-7</article-id>
<article-id pub-id-type="doi">10.1016/j.bbamem.2017.10.002</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" id="au0005">
<name>
<surname>Mahajan</surname>
<given-names>Mukesh</given-names>
</name>
</contrib>
<contrib contrib-type="author" id="au0010">
<name>
<surname>Chatterjee</surname>
<given-names>Deepak</given-names>
</name>
</contrib>
<contrib contrib-type="author" id="au0015">
<name>
<surname>Bhuvaneswari</surname>
<given-names>Kannaian</given-names>
</name>
</contrib>
<contrib contrib-type="author" id="au0020">
<name>
<surname>Pillay</surname>
<given-names>Shubhadra</given-names>
</name>
</contrib>
<contrib contrib-type="author" id="au0025">
<name>
<surname>Bhattacharjya</surname>
<given-names>Surajit</given-names>
</name>
<email>surajit@ntu.edu.sg</email>
<xref rid="cr0005" ref-type="corresp"></xref>
</contrib>
</contrib-group>
<aff id="af0005">School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore</aff>
<author-notes>
<corresp id="cr0005">
<label></label>
Corresponding author at: 60 Nanyang Drive, 637551, Singapore.
<email>surajit@ntu.edu.sg</email>
</corresp>
</author-notes>
<pub-date pub-type="pmc-release">
<day>5</day>
<month>10</month>
<year>2017</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub">
<month>2</month>
<year>2018</year>
</pub-date>
<pub-date pub-type="epub">
<day>5</day>
<month>10</month>
<year>2017</year>
</pub-date>
<volume>1860</volume>
<issue>2</issue>
<fpage>407</fpage>
<lpage>415</lpage>
<history>
<date date-type="received">
<day>4</day>
<month>5</month>
<year>2017</year>
</date>
<date date-type="rev-recd">
<day>16</day>
<month>9</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>3</day>
<month>10</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>© 2017 Elsevier B.V.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Elsevier B.V.</copyright-holder>
<license>
<license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p>
</license>
</permissions>
<abstract id="ab0005">
<p>The lethal Coronaviruses (CoVs), Severe Acute Respiratory Syndrome-associated Coronavirus (SARS-CoV) and most recently Middle East Respiratory Syndrome Coronavirus, (MERS-CoV) are serious human health hazard. A successful viral infection requires fusion between virus and host cells carried out by the surface spike glycoprotein or S protein of CoV. Current models propose that the S2 subunit of S protein assembled into a hexameric helical bundle exposing hydrophobic fusogenic peptides or fusion peptides (FPs) for membrane insertion. The N-terminus of S2 subunit of SARS-CoV reported to be active in cell fusion whereby FPs have been identified. Atomic-resolution structure of FPs derived either in model membranes or in membrane mimic environment would glean insights toward viral cell fusion mechanism. Here, we have solved 3D structure, dynamics and micelle localization of a 64-residue long fusion peptide or LFP in DPC detergent micelles by NMR methods. Micelle bound structure of LFP is elucidated by the presence of discretely folded helical and intervening loops. The C-terminus region, residues F42-Y62, displays a long hydrophobic helix, whereas the N-terminus is defined by a short amphipathic helix, residues R4-Q12. The intervening residues of LFP assume stretches of loops and helical turns. The N-terminal helix is sustained by close aromatic and aliphatic sidechain packing interactions at the non-polar face.
<sup>15</sup>
N{
<sup>1</sup>
H}NOE studies indicated dynamical motion, at ps-ns timescale, of the helices of LFP in DPC micelles. PRE NMR showed that insertion of several regions of LFP into DPC micelle core. Together, the current study provides insights toward fusion mechanism of SARS-CoV.</p>
</abstract>
<abstract abstract-type="graphical" id="ab0010">
<title>Graphical abstract</title>
<p>
<fig id="f0050" position="anchor">
<alt-text id="al0055">Image 2</alt-text>
<graphic xlink:href="fx1_lrg"></graphic>
</fig>
</p>
</abstract>
<abstract abstract-type="author-highlights" id="ab0015">
<title>Highlights</title>
<p>
<list list-type="simple" id="l0005">
<list-item id="li0005">
<label></label>
<p id="p0005">3-D structure of long fusion peptide (LFP) of SRAS-CoV in DPC micelles</p>
</list-item>
<list-item id="li0010">
<label></label>
<p id="p0010">LFP adopts helix-loop-helix structure and inserts into micelle.</p>
</list-item>
<list-item id="li0015">
<label></label>
<p id="p0015">The structure provides mechanism of membrane fusion process.</p>
</list-item>
</list>
</p>
</abstract>
<kwd-group id="ks0005">
<title>Abbreviations</title>
<kwd>CoVs, Coronaviruses</kwd>
<kwd>SARS-CoV, Severe acute respiratory syndrome-associated coronavirus</kwd>
<kwd>FPs, fusion peptides</kwd>
<kwd>LFP, long fusion peptide</kwd>
<kwd>NMR, nuclear magnetic resonance</kwd>
<kwd>DPC, dodecyl phosphocholine</kwd>
<kwd>PRE, paramagnetic relaxation enhancement</kwd>
</kwd-group>
<kwd-group id="ks0010">
<title>Keywords</title>
<kwd>SARS-CoV</kwd>
<kwd>Cell fusion</kwd>
<kwd>NMR</kwd>
<kwd>Structure</kwd>
<kwd>Fusion protein</kwd>
<kwd>Fusion peptide</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
<affiliations>
<list></list>
<tree>
<noCountry>
<name sortKey="Bhattacharjya, Surajit" sort="Bhattacharjya, Surajit" uniqKey="Bhattacharjya S" first="Surajit" last="Bhattacharjya">Surajit Bhattacharjya</name>
<name sortKey="Bhuvaneswari, Kannaian" sort="Bhuvaneswari, Kannaian" uniqKey="Bhuvaneswari K" first="Kannaian" last="Bhuvaneswari">Kannaian Bhuvaneswari</name>
<name sortKey="Chatterjee, Deepak" sort="Chatterjee, Deepak" uniqKey="Chatterjee D" first="Deepak" last="Chatterjee">Deepak Chatterjee</name>
<name sortKey="Mahajan, Mukesh" sort="Mahajan, Mukesh" uniqKey="Mahajan M" first="Mukesh" last="Mahajan">Mukesh Mahajan</name>
<name sortKey="Pillay, Shubhadra" sort="Pillay, Shubhadra" uniqKey="Pillay S" first="Shubhadra" last="Pillay">Shubhadra Pillay</name>
</noCountry>
</tree>
</affiliations>
</record>

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