SrasV1, PascalFrancis, Curation, bibRecord, 000957

Genomic and serological detection of bat coronavirus from bats in the Philippines

Identifieur interne : 000957 ( PascalFrancis/Curation ); précédent : 000956; suivant : 000958

Genomic and serological detection of bat coronavirus from bats in the Philippines

Auteurs : Shumpei Tsuda [Japon] ; Shumpei Watanabe [Japon] ; Joseph S. Masangkay [Philippines] ; Tetsuya Mizutani [Japon] ; Phillip Alviola [Philippines] ; Naoya Ueda [Japon] ; Koichiro Iha [Japon] ; Satoshi Taniguchi [Japon] ; Hikaru Fujii [Japon] ; Kentaro Kato [Japon] ; Taisuke Horimoto [Japon] ; Shigeru Kyuwa [Japon] ; Yasuhiro Yoshikawa [Japon] ; Hiroomi Akashi [Japon]

Source :

Archives of virology [ 0304-8608 ] ; 2012.

RBID : Pascal:13-0026617

Descripteurs français

Pascal (Inist)
- Coronavirus, Génomique, Sérologie, Détection, Philippines.
Wicri :
- geographic : Philippines.

English descriptors

KwdEn :
- Coronavirus, Detection, Genomics, Philippines, Serology.

Abstract

Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus Betacoronavirus. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. These surveys suggested the endemic presence of BtCoVs in the Philippines.

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A08	`01`	`1`	`ENG`	`@1 Genomic and serological detection of bat coronavirus from bats in the Philippines`
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A11	`02`	`1`		`@1 WATANABE (Shumpei)`
A11	`03`	`1`		`@1 MASANGKAY (Joseph S.)`
A11	`04`	`1`		`@1 MIZUTANI (Tetsuya)`
A11	`05`	`1`		`@1 ALVIOLA (Phillip)`
A11	`06`	`1`		`@1 UEDA (Naoya)`
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A11	`08`	`1`		`@1 TANIGUCHI (Satoshi)`
A11	`09`	`1`		`@1 FUJII (Hikaru)`
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A11	`13`	`1`		`@1 YOSHIKAWA (Yasuhiro)`
A11	`14`	`1`		`@1 AKASHI (Hiroomi)`
A14	`01`			`@1 Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi @2 Bunkyo-ku, Tokyo 113-8657 @3 JPN @Z 1 aut. @Z 2 aut. @Z 9 aut. @Z 10 aut. @Z 11 aut. @Z 14 aut.`
A14	`02`			`@1 College of Veterinary Medicine, University of the Philippines Los Baños, College @2 4031 Laguna @3 PHL @Z 3 aut.`
A14	`03`			`@1 Department of Virology 1, National Institute of Infectious Diseases, Gakuen 4-7-1 @2 Musashimurayama, Tokyo 208-0011 @3 JPN @Z 4 aut. @Z 7 aut. @Z 8 aut.`
A14	`04`			`@1 Museum of National History, University of the Philippines Los Banos, College @2 4031 Laguna @3 PHL @Z 5 aut.`
A14	`05`			`@1 Department of Biomedical Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi @2 Bunkyo-ku, Tokyo 113-8657 @3 JPN @Z 6 aut. @Z 12 aut.`
A14	`06`			`@1 Laboratory of Zoonosis, School of Veterinary Medicine, Kitasato University, Higashi 23-bancho @2 Towada, Aomori 034-8628 @3 JPN @Z 13 aut.`
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C01	`01`		`ENG`	@0 Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus Betacoronavirus. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. These surveys suggested the endemic presence of BtCoVs in the Philippines.
C02	`01`	`X`		`@0 002A05C10`
C03	`01`	`X`	`FRE`	`@0 Coronavirus @2 NW @5 01`
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C03	`02`	`X`	`FRE`	`@0 Génomique @5 05`
C03	`02`	`X`	`ENG`	`@0 Genomics @5 05`
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C03	`03`	`X`	`FRE`	`@0 Sérologie @5 06`
C03	`03`	`X`	`ENG`	`@0 Serology @5 06`
C03	`03`	`X`	`SPA`	`@0 Serología @5 06`
C03	`04`	`X`	`FRE`	`@0 Détection @5 07`
C03	`04`	`X`	`ENG`	`@0 Detection @5 07`
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C03	`05`	`X`	`FRE`	`@0 Philippines @2 NG @5 08`
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C07	`02`	`X`	`FRE`	`@0 Nidovirales @2 NW`
C07	`02`	`X`	`ENG`	`@0 Nidovirales @2 NW`
C07	`02`	`X`	`SPA`	`@0 Nidovirales @2 NW`
C07	`03`	`X`	`FRE`	`@0 Virus @2 NW`
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C07	`04`	`X`	`FRE`	`@0 Asie @2 NG`
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N21				`@1 014`
N44	`01`			`@1 OTO`
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Pascal:13-0026617

Le document en format XML

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<author><name sortKey="Ueda, Naoya" sort="Ueda, Naoya" uniqKey="Ueda N" first="Naoya" last="Ueda">Naoya Ueda</name>
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<author><name sortKey="Iha, Koichiro" sort="Iha, Koichiro" uniqKey="Iha K" first="Koichiro" last="Iha">Koichiro Iha</name>
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<author><name sortKey="Taniguchi, Satoshi" sort="Taniguchi, Satoshi" uniqKey="Taniguchi S" first="Satoshi" last="Taniguchi">Satoshi Taniguchi</name>
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<author><name sortKey="Fujii, Hikaru" sort="Fujii, Hikaru" uniqKey="Fujii H" first="Hikaru" last="Fujii">Hikaru Fujii</name>
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<author><name sortKey="Kato, Kentaro" sort="Kato, Kentaro" uniqKey="Kato K" first="Kentaro" last="Kato">Kentaro Kato</name>
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<author><name sortKey="Horimoto, Taisuke" sort="Horimoto, Taisuke" uniqKey="Horimoto T" first="Taisuke" last="Horimoto">Taisuke Horimoto</name>
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<author><name sortKey="Kyuwa, Shigeru" sort="Kyuwa, Shigeru" uniqKey="Kyuwa S" first="Shigeru" last="Kyuwa">Shigeru Kyuwa</name>
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<author><name sortKey="Yoshikawa, Yasuhiro" sort="Yoshikawa, Yasuhiro" uniqKey="Yoshikawa Y" first="Yasuhiro" last="Yoshikawa">Yasuhiro Yoshikawa</name>
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<s2>Towada, Aomori 034-8628</s2>
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<author><name sortKey="Akashi, Hiroomi" sort="Akashi, Hiroomi" uniqKey="Akashi H" first="Hiroomi" last="Akashi">Hiroomi Akashi</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Genomic and serological detection of bat coronavirus from bats in the Philippines</title>
<author><name sortKey="Tsuda, Shumpei" sort="Tsuda, Shumpei" uniqKey="Tsuda S" first="Shumpei" last="Tsuda">Shumpei Tsuda</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
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<author><name sortKey="Watanabe, Shumpei" sort="Watanabe, Shumpei" uniqKey="Watanabe S" first="Shumpei" last="Watanabe">Shumpei Watanabe</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
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</author>
<author><name sortKey="Masangkay, Joseph S" sort="Masangkay, Joseph S" uniqKey="Masangkay J" first="Joseph S." last="Masangkay">Joseph S. Masangkay</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>College of Veterinary Medicine, University of the Philippines Los Baños, College</s1>
<s2>4031 Laguna</s2>
<s3>PHL</s3>
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</inist:fA14>
<country>Philippines</country>
</affiliation>
</author>
<author><name sortKey="Mizutani, Tetsuya" sort="Mizutani, Tetsuya" uniqKey="Mizutani T" first="Tetsuya" last="Mizutani">Tetsuya Mizutani</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Virology 1, National Institute of Infectious Diseases, Gakuen 4-7-1</s1>
<s2>Musashimurayama, Tokyo 208-0011</s2>
<s3>JPN</s3>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Alviola, Phillip" sort="Alviola, Phillip" uniqKey="Alviola P" first="Phillip" last="Alviola">Phillip Alviola</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Museum of National History, University of the Philippines Los Banos, College</s1>
<s2>4031 Laguna</s2>
<s3>PHL</s3>
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</inist:fA14>
<country>Philippines</country>
</affiliation>
</author>
<author><name sortKey="Ueda, Naoya" sort="Ueda, Naoya" uniqKey="Ueda N" first="Naoya" last="Ueda">Naoya Ueda</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>6 aut.</sZ>
<sZ>12 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Iha, Koichiro" sort="Iha, Koichiro" uniqKey="Iha K" first="Koichiro" last="Iha">Koichiro Iha</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Virology 1, National Institute of Infectious Diseases, Gakuen 4-7-1</s1>
<s2>Musashimurayama, Tokyo 208-0011</s2>
<s3>JPN</s3>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Taniguchi, Satoshi" sort="Taniguchi, Satoshi" uniqKey="Taniguchi S" first="Satoshi" last="Taniguchi">Satoshi Taniguchi</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Virology 1, National Institute of Infectious Diseases, Gakuen 4-7-1</s1>
<s2>Musashimurayama, Tokyo 208-0011</s2>
<s3>JPN</s3>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Fujii, Hikaru" sort="Fujii, Hikaru" uniqKey="Fujii H" first="Hikaru" last="Fujii">Hikaru Fujii</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>14 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Kato, Kentaro" sort="Kato, Kentaro" uniqKey="Kato K" first="Kentaro" last="Kato">Kentaro Kato</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>14 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Horimoto, Taisuke" sort="Horimoto, Taisuke" uniqKey="Horimoto T" first="Taisuke" last="Horimoto">Taisuke Horimoto</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
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<sZ>10 aut.</sZ>
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<country>Japon</country>
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</author>
<author><name sortKey="Kyuwa, Shigeru" sort="Kyuwa, Shigeru" uniqKey="Kyuwa S" first="Shigeru" last="Kyuwa">Shigeru Kyuwa</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>6 aut.</sZ>
<sZ>12 aut.</sZ>
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<country>Japon</country>
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</author>
<author><name sortKey="Yoshikawa, Yasuhiro" sort="Yoshikawa, Yasuhiro" uniqKey="Yoshikawa Y" first="Yasuhiro" last="Yoshikawa">Yasuhiro Yoshikawa</name>
<affiliation wicri:level="1"><inist:fA14 i1="06"><s1>Laboratory of Zoonosis, School of Veterinary Medicine, Kitasato University, Higashi 23-bancho</s1>
<s2>Towada, Aomori 034-8628</s2>
<s3>JPN</s3>
<sZ>13 aut.</sZ>
</inist:fA14>
<country>Japon</country>
</affiliation>
</author>
<author><name sortKey="Akashi, Hiroomi" sort="Akashi, Hiroomi" uniqKey="Akashi H" first="Hiroomi" last="Akashi">Hiroomi Akashi</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences. The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>14 aut.</sZ>
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<series><title level="j" type="main">Archives of virology</title>
<title level="j" type="abbreviated">Arch. virol.</title>
<idno type="ISSN">0304-8608</idno>
<imprint><date when="2012">2012</date>
</imprint>
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<seriesStmt><title level="j" type="main">Archives of virology</title>
<title level="j" type="abbreviated">Arch. virol.</title>
<idno type="ISSN">0304-8608</idno>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Coronavirus</term>
<term>Detection</term>
<term>Genomics</term>
<term>Philippines</term>
<term>Serology</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Coronavirus</term>
<term>Génomique</term>
<term>Sérologie</term>
<term>Détection</term>
<term>Philippines</term>
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<front><div type="abstract" xml:lang="en">Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus Betacoronavirus. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. These surveys suggested the endemic presence of BtCoVs in the Philippines.</div>
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<s3>JPN</s3>
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<sZ>9 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>14 aut.</sZ>
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<fA14 i1="02"><s1>College of Veterinary Medicine, University of the Philippines Los Baños, College</s1>
<s2>4031 Laguna</s2>
<s3>PHL</s3>
<sZ>3 aut.</sZ>
</fA14>
<fA14 i1="03"><s1>Department of Virology 1, National Institute of Infectious Diseases, Gakuen 4-7-1</s1>
<s2>Musashimurayama, Tokyo 208-0011</s2>
<s3>JPN</s3>
<sZ>4 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
</fA14>
<fA14 i1="04"><s1>Museum of National History, University of the Philippines Los Banos, College</s1>
<s2>4031 Laguna</s2>
<s3>PHL</s3>
<sZ>5 aut.</sZ>
</fA14>
<fA14 i1="05"><s1>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi</s1>
<s2>Bunkyo-ku, Tokyo 113-8657</s2>
<s3>JPN</s3>
<sZ>6 aut.</sZ>
<sZ>12 aut.</sZ>
</fA14>
<fA14 i1="06"><s1>Laboratory of Zoonosis, School of Veterinary Medicine, Kitasato University, Higashi 23-bancho</s1>
<s2>Towada, Aomori 034-8628</s2>
<s3>JPN</s3>
<sZ>13 aut.</sZ>
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<fC01 i1="01" l="ENG"><s0>Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus Betacoronavirus. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. These surveys suggested the endemic presence of BtCoVs in the Philippines.</s0>
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Genomic and serological detection of bat coronavirus from bats in the Philippines

Genomic and serological detection of bat coronavirus from bats in the Philippines

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