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Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors

Identifieur interne : 000313 ( PascalFrancis/Corpus ); précédent : 000312; suivant : 000314

Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors

Auteurs : Arun K. Ghosh ; KAI XI ; Valerie Grum-Tokars ; XIAOMING XU ; Kiira Ratia ; WENTAO FU ; Katherine V. Houser ; Susan C. Baker ; Michael E. Johnson ; Andrew D. Mesecar

Source :

RBID : Pascal:08-0100536

Descripteurs français

English descriptors

Abstract

-Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P4-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.

Notice en format standard (ISO 2709)

Pour connaître la documentation sur le format Inist Standard.

pA  
A01 01  1    @0 0960-894X
A03   1    @0 Bioorg. med. chem. lett. : (Print)
A05       @2 17
A06       @2 21
A08 01  1  ENG  @1 Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors
A11 01  1    @1 GHOSH (Arun K.)
A11 02  1    @1 KAI XI
A11 03  1    @1 GRUM-TOKARS (Valerie)
A11 04  1    @1 XIAOMING XU
A11 05  1    @1 RATIA (Kiira)
A11 06  1    @1 WENTAO FU
A11 07  1    @1 HOUSER (Katherine V.)
A11 08  1    @1 BAKER (Susan C.)
A11 09  1    @1 JOHNSON (Michael E.)
A11 10  1    @1 MESECAR (Andrew D.)
A14 01      @1 Departments of Chemistry and Medicinal Chemistry, Purdue University @2 West Lafayette, IN 47907 @3 USA @Z 1 aut. @Z 2 aut. @Z 4 aut.
A14 02      @1 Center for Pharmaceutical Biotechnology and Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, 900 S @2 Ashland, IL 60607 @3 USA @Z 3 aut. @Z 5 aut. @Z 6 aut. @Z 9 aut. @Z 10 aut.
A14 03      @1 Department of Microbiology and Immunology, Loyola University of Chicago, Stritch School of Medicine @2 Maywood, IL @3 USA @Z 7 aut. @Z 8 aut.
A20       @1 5876-5880
A21       @1 2007
A23 01      @0 ENG
A43 01      @1 INIST @2 22446 @5 354000143466890260
A44       @0 0000 @1 © 2008 INIST-CNRS. All rights reserved.
A45       @0 20 ref.
A47 01  1    @0 08-0100536
A60       @1 P
A61       @0 A
A64 01  1    @0 Bioorganic & medicinal chemistry letters : (Print)
A66 01      @0 GBR
C01 01    ENG  @0 -Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P4-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.
C02 01  X    @0 002B02S05
C03 01  X  FRE  @0 Relation structure activité @5 01
C03 01  X  ENG  @0 Structure activity relation @5 01
C03 01  X  SPA  @0 Relación estructura actividad @5 01
C03 02  X  FRE  @0 Synthèse chimique @5 02
C03 02  X  ENG  @0 Chemical synthesis @5 02
C03 02  X  SPA  @0 Síntesis química @5 02
C03 03  X  FRE  @0 Antiviral @5 03
C03 03  X  ENG  @0 Antiviral @5 03
C03 03  X  SPA  @0 Antiviral @5 03
C03 04  X  FRE  @0 Composé peptidomimétique @5 04
C03 04  X  ENG  @0 Peptidomimetic compound @5 04
C03 04  X  SPA  @0 Compuesto peptidomimético @5 04
C03 05  X  FRE  @0 Virus syndrome respiratoire aigu sévère @2 NW @5 05
C03 05  X  ENG  @0 Severe acute respiratory syndrome virus @2 NW @5 05
C03 05  X  SPA  @0 Severe acute respiratory syndrome virus @2 NW @5 05
C03 06  X  FRE  @0 Inhibiteur protease @2 FR @5 06
C03 06  X  ENG  @0 Protease inhibitor @2 FR @5 06
C03 06  X  SPA  @0 Inhibidor proteasa @2 FR @5 06
C03 07  X  FRE  @0 Structure cristalline @5 07
C03 07  X  ENG  @0 Crystalline structure @5 07
C03 07  X  SPA  @0 Estructura cristalina @5 07
C03 08  X  FRE  @0 Composé non peptide @5 08
C03 08  X  ENG  @0 Non peptide compound @5 08
C03 08  X  SPA  @0 Compuesto no péptido @5 08
C03 09  X  FRE  @0 Composé aliphatique @5 09
C03 09  X  ENG  @0 Aliphatic compound @5 09
C03 09  X  SPA  @0 Compuesto alifático @5 09
C03 10  X  FRE  @0 Lactame @5 10
C03 10  X  ENG  @0 Lactam @5 10
C03 10  X  SPA  @0 Lactamo @5 10
C03 11  X  FRE  @0 In vitro @5 11
C03 11  X  ENG  @0 In vitro @5 11
C03 11  X  SPA  @0 In vitro @5 11
C03 12  X  FRE  @0 Modèle moléculaire @5 12
C03 12  X  ENG  @0 Molecular model @5 12
C03 12  X  SPA  @0 Modelo molecular @5 12
C03 13  X  FRE  @0 Complexe enzyme inhibiteur @5 13
C03 13  X  ENG  @0 Inhibitor enzyme complex @5 13
C03 13  X  SPA  @0 Complejo enzima inhibidor @5 13
C03 14  X  FRE  @0 Aminoester @5 14
C03 14  X  ENG  @0 Aminoester @5 14
C03 14  X  SPA  @0 Aminoester @5 14
C03 15  X  FRE  @0 Composé éthylénique @5 15
C03 15  X  ENG  @0 Ethylenic compound @5 15
C03 15  X  SPA  @0 Compuesto etilénico @5 15
C03 16  X  FRE  @0 Liaison hydrogène @5 16
C03 16  X  ENG  @0 Hydrogen bond @5 16
C03 16  X  SPA  @0 Enlace hidrógeno @5 16
C03 17  X  FRE  @0 Inhibiteur enzyme @5 32
C03 17  X  ENG  @0 Enzyme inhibitor @5 32
C03 17  X  SPA  @0 Inhibidor enzima @5 32
C03 18  X  FRE  @0 Peptidases @2 FE @5 33
C03 18  X  ENG  @0 Peptidases @2 FE @5 33
C03 18  X  SPA  @0 Peptidases @2 FE @5 33
C03 19  X  FRE  @0 Modélisation @5 35
C03 19  X  ENG  @0 Modeling @5 35
C03 19  X  SPA  @0 Modelización @5 35
C03 20  X  FRE  @0 Diffraction RX @5 36
C03 20  X  ENG  @0 X ray diffraction @5 36
C03 20  X  SPA  @0 Difracción RX @5 36
C03 21  X  FRE  @0 Structure moléculaire @5 37
C03 21  X  ENG  @0 Molecular structure @5 37
C03 21  X  SPA  @0 Estructura molecular @5 37
C03 22  X  FRE  @0 Pent-2-énoïque acide dérivé @2 NK @4 INC @5 76
C03 23  X  FRE  @0 Pyrrolidin-2-one dérivé @2 NK @4 INC @5 77
C03 24  X  FRE  @0 Hex-4-énoïque acide dérivé @2 NK @4 INC @5 78
C03 25  X  FRE  @0 Sérine dérivé @2 NK @4 INC @5 79
C07 01  X  FRE  @0 Coronavirus @2 NW
C07 01  X  ENG  @0 Coronavirus @2 NW
C07 01  X  SPA  @0 Coronavirus @2 NW
C07 02  X  FRE  @0 Coronaviridae @2 NW
C07 02  X  ENG  @0 Coronaviridae @2 NW
C07 02  X  SPA  @0 Coronaviridae @2 NW
C07 03  X  FRE  @0 Nidovirales @2 NW
C07 03  X  ENG  @0 Nidovirales @2 NW
C07 03  X  SPA  @0 Nidovirales @2 NW
C07 04  X  FRE  @0 Virus @2 NW
C07 04  X  ENG  @0 Virus @2 NW
C07 04  X  SPA  @0 Virus @2 NW
C07 05  X  FRE  @0 Hydrolases @2 FE
C07 05  X  ENG  @0 Hydrolases @2 FE
C07 05  X  SPA  @0 Hydrolases @2 FE
C07 06  X  FRE  @0 Enzyme @2 FE
C07 06  X  ENG  @0 Enzyme @2 FE
C07 06  X  SPA  @0 Enzima @2 FE
N21       @1 056

Format Inist (serveur)

NO : PASCAL 08-0100536 INIST
ET : Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors
AU : GHOSH (Arun K.); KAI XI; GRUM-TOKARS (Valerie); XIAOMING XU; RATIA (Kiira); WENTAO FU; HOUSER (Katherine V.); BAKER (Susan C.); JOHNSON (Michael E.); MESECAR (Andrew D.)
AF : Departments of Chemistry and Medicinal Chemistry, Purdue University/West Lafayette, IN 47907/Etats-Unis (1 aut., 2 aut., 4 aut.); Center for Pharmaceutical Biotechnology and Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, 900 S/Ashland, IL 60607/Etats-Unis (3 aut., 5 aut., 6 aut., 9 aut., 10 aut.); Department of Microbiology and Immunology, Loyola University of Chicago, Stritch School of Medicine/Maywood, IL/Etats-Unis (7 aut., 8 aut.)
DT : Publication en série; Niveau analytique
SO : Bioorganic & medicinal chemistry letters : (Print); ISSN 0960-894X; Royaume-Uni; Da. 2007; Vol. 17; No. 21; Pp. 5876-5880; Bibl. 20 ref.
LA : Anglais
EA : -Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P4-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.
CC : 002B02S05
FD : Relation structure activité; Synthèse chimique; Antiviral; Composé peptidomimétique; Virus syndrome respiratoire aigu sévère; Inhibiteur protease; Structure cristalline; Composé non peptide; Composé aliphatique; Lactame; In vitro; Modèle moléculaire; Complexe enzyme inhibiteur; Aminoester; Composé éthylénique; Liaison hydrogène; Inhibiteur enzyme; Peptidases; Modélisation; Diffraction RX; Structure moléculaire; Pent-2-énoïque acide dérivé; Pyrrolidin-2-one dérivé; Hex-4-énoïque acide dérivé; Sérine dérivé
FG : Coronavirus; Coronaviridae; Nidovirales; Virus; Hydrolases; Enzyme
ED : Structure activity relation; Chemical synthesis; Antiviral; Peptidomimetic compound; Severe acute respiratory syndrome virus; Protease inhibitor; Crystalline structure; Non peptide compound; Aliphatic compound; Lactam; In vitro; Molecular model; Inhibitor enzyme complex; Aminoester; Ethylenic compound; Hydrogen bond; Enzyme inhibitor; Peptidases; Modeling; X ray diffraction; Molecular structure
EG : Coronavirus; Coronaviridae; Nidovirales; Virus; Hydrolases; Enzyme
SD : Relación estructura actividad; Síntesis química; Antiviral; Compuesto peptidomimético; Severe acute respiratory syndrome virus; Inhibidor proteasa; Estructura cristalina; Compuesto no péptido; Compuesto alifático; Lactamo; In vitro; Modelo molecular; Complejo enzima inhibidor; Aminoester; Compuesto etilénico; Enlace hidrógeno; Inhibidor enzima; Peptidases; Modelización; Difracción RX; Estructura molecular
LO : INIST-22446.354000143466890260
ID : 08-0100536

Links to Exploration step

Pascal:08-0100536

Le document en format XML

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<name sortKey="Mesecar, Andrew D" sort="Mesecar, Andrew D" uniqKey="Mesecar A" first="Andrew D." last="Mesecar">Andrew D. Mesecar</name>
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<s1>Center for Pharmaceutical Biotechnology and Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, 900 S</s1>
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<title level="j" type="main">Bioorganic & medicinal chemistry letters : (Print)</title>
<title level="j" type="abbreviated">Bioorg. med. chem. lett. : (Print)</title>
<idno type="ISSN">0960-894X</idno>
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<title level="j" type="main">Bioorganic & medicinal chemistry letters : (Print)</title>
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<term>Aliphatic compound</term>
<term>Aminoester</term>
<term>Antiviral</term>
<term>Chemical synthesis</term>
<term>Crystalline structure</term>
<term>Enzyme inhibitor</term>
<term>Ethylenic compound</term>
<term>Hydrogen bond</term>
<term>In vitro</term>
<term>Inhibitor enzyme complex</term>
<term>Lactam</term>
<term>Modeling</term>
<term>Molecular model</term>
<term>Molecular structure</term>
<term>Non peptide compound</term>
<term>Peptidases</term>
<term>Peptidomimetic compound</term>
<term>Protease inhibitor</term>
<term>Severe acute respiratory syndrome virus</term>
<term>Structure activity relation</term>
<term>X ray diffraction</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr">
<term>Relation structure activité</term>
<term>Synthèse chimique</term>
<term>Antiviral</term>
<term>Composé peptidomimétique</term>
<term>Virus syndrome respiratoire aigu sévère</term>
<term>Inhibiteur protease</term>
<term>Structure cristalline</term>
<term>Composé non peptide</term>
<term>Composé aliphatique</term>
<term>Lactame</term>
<term>In vitro</term>
<term>Modèle moléculaire</term>
<term>Complexe enzyme inhibiteur</term>
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<term>Modélisation</term>
<term>Diffraction RX</term>
<term>Structure moléculaire</term>
<term>Pent-2-énoïque acide dérivé</term>
<term>Pyrrolidin-2-one dérivé</term>
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<div type="abstract" xml:lang="en">-Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P
<sub>4</sub>
-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.</div>
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<s1>GHOSH (Arun K.)</s1>
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<s0>-Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P
<sub>4</sub>
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<s5>33</s5>
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<s0>Peptidases</s0>
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<s5>33</s5>
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<s0>Peptidases</s0>
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<s5>35</s5>
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<s5>35</s5>
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<s5>36</s5>
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<s5>37</s5>
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<s5>37</s5>
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<s5>37</s5>
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<s5>76</s5>
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<s5>77</s5>
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<s5>78</s5>
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<s0>Coronavirus</s0>
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<s0>Coronavirus</s0>
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<s0>Nidovirales</s0>
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<s0>Nidovirales</s0>
<s2>NW</s2>
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<s0>Nidovirales</s0>
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<s0>Virus</s0>
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<s0>Virus</s0>
<s2>NW</s2>
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<s0>Virus</s0>
<s2>NW</s2>
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<s0>Hydrolases</s0>
<s2>FE</s2>
</fC07>
<fC07 i1="05" i2="X" l="ENG">
<s0>Hydrolases</s0>
<s2>FE</s2>
</fC07>
<fC07 i1="05" i2="X" l="SPA">
<s0>Hydrolases</s0>
<s2>FE</s2>
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<fC07 i1="06" i2="X" l="FRE">
<s0>Enzyme</s0>
<s2>FE</s2>
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<fC07 i1="06" i2="X" l="ENG">
<s0>Enzyme</s0>
<s2>FE</s2>
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<fC07 i1="06" i2="X" l="SPA">
<s0>Enzima</s0>
<s2>FE</s2>
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<fN21>
<s1>056</s1>
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<server>
<NO>PASCAL 08-0100536 INIST</NO>
<ET>Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors</ET>
<AU>GHOSH (Arun K.); KAI XI; GRUM-TOKARS (Valerie); XIAOMING XU; RATIA (Kiira); WENTAO FU; HOUSER (Katherine V.); BAKER (Susan C.); JOHNSON (Michael E.); MESECAR (Andrew D.)</AU>
<AF>Departments of Chemistry and Medicinal Chemistry, Purdue University/West Lafayette, IN 47907/Etats-Unis (1 aut., 2 aut., 4 aut.); Center for Pharmaceutical Biotechnology and Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, 900 S/Ashland, IL 60607/Etats-Unis (3 aut., 5 aut., 6 aut., 9 aut., 10 aut.); Department of Microbiology and Immunology, Loyola University of Chicago, Stritch School of Medicine/Maywood, IL/Etats-Unis (7 aut., 8 aut.)</AF>
<DT>Publication en série; Niveau analytique</DT>
<SO>Bioorganic & medicinal chemistry letters : (Print); ISSN 0960-894X; Royaume-Uni; Da. 2007; Vol. 17; No. 21; Pp. 5876-5880; Bibl. 20 ref.</SO>
<LA>Anglais</LA>
<EA>-Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P
<sub>4</sub>
-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.</EA>
<CC>002B02S05</CC>
<FD>Relation structure activité; Synthèse chimique; Antiviral; Composé peptidomimétique; Virus syndrome respiratoire aigu sévère; Inhibiteur protease; Structure cristalline; Composé non peptide; Composé aliphatique; Lactame; In vitro; Modèle moléculaire; Complexe enzyme inhibiteur; Aminoester; Composé éthylénique; Liaison hydrogène; Inhibiteur enzyme; Peptidases; Modélisation; Diffraction RX; Structure moléculaire; Pent-2-énoïque acide dérivé; Pyrrolidin-2-one dérivé; Hex-4-énoïque acide dérivé; Sérine dérivé</FD>
<FG>Coronavirus; Coronaviridae; Nidovirales; Virus; Hydrolases; Enzyme</FG>
<ED>Structure activity relation; Chemical synthesis; Antiviral; Peptidomimetic compound; Severe acute respiratory syndrome virus; Protease inhibitor; Crystalline structure; Non peptide compound; Aliphatic compound; Lactam; In vitro; Molecular model; Inhibitor enzyme complex; Aminoester; Ethylenic compound; Hydrogen bond; Enzyme inhibitor; Peptidases; Modeling; X ray diffraction; Molecular structure</ED>
<EG>Coronavirus; Coronaviridae; Nidovirales; Virus; Hydrolases; Enzyme</EG>
<SD>Relación estructura actividad; Síntesis química; Antiviral; Compuesto peptidomimético; Severe acute respiratory syndrome virus; Inhibidor proteasa; Estructura cristalina; Compuesto no péptido; Compuesto alifático; Lactamo; In vitro; Modelo molecular; Complejo enzima inhibidor; Aminoester; Compuesto etilénico; Enlace hidrógeno; Inhibidor enzima; Peptidases; Modelización; Difracción RX; Estructura molecular</SD>
<LO>INIST-22446.354000143466890260</LO>
<ID>08-0100536</ID>
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