Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis
Identifieur interne : 000474 ( PascalFrancis/Checkpoint ); précédent : 000473; suivant : 000475Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis
Auteurs : WUZE REN [République populaire de Chine] ; WENDONG LI [République populaire de Chine] ; MENG YU [Australie] ; PEI HAO [République populaire de Chine] ; YUAN ZHANG [République populaire de Chine] ; PENG ZHOU [République populaire de Chine] ; SHUYI ZHANG [République populaire de Chine] ; GUOPING ZHAO [République populaire de Chine] ; YANG ZHONG [République populaire de Chine] ; SHENGYUE WANG [République populaire de Chine] ; Lin-Fa Wang [Australie] ; ZHENGLI SHI [République populaire de Chine]Source :
- Journal of general virology [ 0022-1317 ] ; 2006.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Génétique.
English descriptors
- KwdEn :
Abstract
Bats were recently identified as natural reservoirs of SARS-like coronavirus (SL-CoV) or SARS coronavirus-like virus. These viruses, together with SARS coronaviruses (SARS-CoV) isolated from human and palm civet, form a distinctive cluster within the group 2 coronaviruses of the genus Coronavirus, tentatively named group 2b (G2b). In this study, complete genome sequences of two additional group 2b coronaviruses (G2b-CoVs) were determined from horseshoe bat Rhinolophus ferrumequinum (G2b-CoV Rf1) and Rhinolophus macrotis (G2b-CoV Rm1). The bat G2b-CoV isolates have an identical genome organization and share an overall genome sequence identity of 88-92 % among themselves and between them and the human/civet isolates. The most variable regions are located in the genes encoding nsp3, ORF3a, spike protein and ORF8 when bat and human/civet G2b-CoV isolates are compared. Genetic analysis demonstrated that a diverse G2b-CoV population exists in the bat habitat and has evolved from a common ancestor of SARS-CoV.
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Pascal:06-0518315Le document en format XML
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<author><name sortKey="Zhengli Shi" sort="Zhengli Shi" uniqKey="Zhengli Shi" last="Zhengli Shi">ZHENGLI SHI</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis</title>
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<author><name sortKey="Yuan Zhang" sort="Yuan Zhang" uniqKey="Yuan Zhang" last="Yuan Zhang">YUAN ZHANG</name>
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<author><name sortKey="Peng Zhou" sort="Peng Zhou" uniqKey="Peng Zhou" last="Peng Zhou">PENG ZHOU</name>
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<author><name sortKey="Shuyi Zhang" sort="Shuyi Zhang" uniqKey="Shuyi Zhang" last="Shuyi Zhang">SHUYI ZHANG</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Institute of Zoology, CAS</s1>
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<author><name sortKey="Guoping Zhao" sort="Guoping Zhao" uniqKey="Guoping Zhao" last="Guoping Zhao">GUOPING ZHAO</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Shanghai Center for Bioinformation Technology</s1>
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<author><name sortKey="Yang Zhong" sort="Yang Zhong" uniqKey="Yang Zhong" last="Yang Zhong">YANG ZHONG</name>
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<author><name sortKey="Shengyue Wang" sort="Shengyue Wang" uniqKey="Shengyue Wang" last="Shengyue Wang">SHENGYUE WANG</name>
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<author><name sortKey="Wang, Lin Fa" sort="Wang, Lin Fa" uniqKey="Wang L" first="Lin-Fa" last="Wang">Lin-Fa Wang</name>
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<author><name sortKey="Zhengli Shi" sort="Zhengli Shi" uniqKey="Zhengli Shi" last="Zhengli Shi">ZHENGLI SHI</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences (CAS)</s1>
<s2>Wuhan, Hubei 430071</s2>
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<front><div type="abstract" xml:lang="en">Bats were recently identified as natural reservoirs of SARS-like coronavirus (SL-CoV) or SARS coronavirus-like virus. These viruses, together with SARS coronaviruses (SARS-CoV) isolated from human and palm civet, form a distinctive cluster within the group 2 coronaviruses of the genus Coronavirus, tentatively named group 2b (G2b). In this study, complete genome sequences of two additional group 2b coronaviruses (G2b-CoVs) were determined from horseshoe bat Rhinolophus ferrumequinum (G2b-CoV Rf1) and Rhinolophus macrotis (G2b-CoV Rm1). The bat G2b-CoV isolates have an identical genome organization and share an overall genome sequence identity of 88-92 % among themselves and between them and the human/civet isolates. The most variable regions are located in the genes encoding nsp3, ORF3a, spike protein and ORF8 when bat and human/civet G2b-CoV isolates are compared. Genetic analysis demonstrated that a diverse G2b-CoV population exists in the bat habitat and has evolved from a common ancestor of SARS-CoV.</div>
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<fA11 i1="02" i2="1"><s1>WENDONG LI</s1>
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<fA11 i1="03" i2="1"><s1>MENG YU</s1>
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<fA11 i1="05" i2="1"><s1>YUAN ZHANG</s1>
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<fA11 i1="09" i2="1"><s1>YANG ZHONG</s1>
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<fA11 i1="10" i2="1"><s1>SHENGYUE WANG</s1>
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<fA11 i1="11" i2="1"><s1>WANG (Lin-Fa)</s1>
</fA11>
<fA11 i1="12" i2="1"><s1>ZHENGLI SHI</s1>
</fA11>
<fA14 i1="01"><s1>State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences (CAS)</s1>
<s2>Wuhan, Hubei 430071</s2>
<s3>CHN</s3>
<sZ>1 aut.</sZ>
<sZ>6 aut.</sZ>
<sZ>12 aut.</sZ>
</fA14>
<fA14 i1="02"><s1>Graduate School of CAS</s1>
<s2>Beijing 100039</s2>
<s3>CHN</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
</fA14>
<fA14 i1="03"><s1>Institute of Zoology, CAS</s1>
<s2>Beijing 100080</s2>
<s3>CHN</s3>
<sZ>2 aut.</sZ>
<sZ>7 aut.</sZ>
</fA14>
<fA14 i1="04"><s1>CSIRO Livestock Industries, Australian Animal Health Laboratory</s1>
<s2>Geelong, VIC 3220</s2>
<s3>AUS</s3>
<sZ>3 aut.</sZ>
<sZ>11 aut.</sZ>
</fA14>
<fA14 i1="05"><s1>Shanghai Center for Bioinformation Technology</s1>
<s2>Shanghai 200235</s2>
<s3>CHN</s3>
<sZ>4 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>10 aut.</sZ>
</fA14>
<fA14 i1="06"><s1>School of Life Sciences, Fudan University</s1>
<s2>Shanghai 200433</s2>
<s3>CHN</s3>
<sZ>5 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>10 aut.</sZ>
</fA14>
<fA20><s1>3355-3359</s1>
</fA20>
<fA21><s1>2006</s1>
</fA21>
<fA23 i1="01"><s0>ENG</s0>
</fA23>
<fA43 i1="01"><s1>INIST</s1>
<s2>13533</s2>
<s5>354000139217140260</s5>
</fA43>
<fA44><s0>0000</s0>
<s1>© 2006 INIST-CNRS. All rights reserved.</s1>
</fA44>
<fA45><s0>26 ref.</s0>
</fA45>
<fA47 i1="01" i2="1"><s0>06-0518315</s0>
</fA47>
<fA60><s1>P</s1>
</fA60>
<fA61><s0>A</s0>
</fA61>
<fA64 i1="01" i2="1"><s0>Journal of general virology</s0>
</fA64>
<fA66 i1="01"><s0>GBR</s0>
</fA66>
<fC01 i1="01" l="ENG"><s0>Bats were recently identified as natural reservoirs of SARS-like coronavirus (SL-CoV) or SARS coronavirus-like virus. These viruses, together with SARS coronaviruses (SARS-CoV) isolated from human and palm civet, form a distinctive cluster within the group 2 coronaviruses of the genus Coronavirus, tentatively named group 2b (G2b). In this study, complete genome sequences of two additional group 2b coronaviruses (G2b-CoVs) were determined from horseshoe bat Rhinolophus ferrumequinum (G2b-CoV Rf1) and Rhinolophus macrotis (G2b-CoV Rm1). The bat G2b-CoV isolates have an identical genome organization and share an overall genome sequence identity of 88-92 % among themselves and between them and the human/civet isolates. The most variable regions are located in the genes encoding nsp3, ORF3a, spike protein and ORF8 when bat and human/civet G2b-CoV isolates are compared. Genetic analysis demonstrated that a diverse G2b-CoV population exists in the bat habitat and has evolved from a common ancestor of SARS-CoV.</s0>
</fC01>
<fC02 i1="01" i2="X"><s0>002A05C10</s0>
</fC02>
<fC02 i1="02" i2="X"><s0>002A05C05</s0>
</fC02>
<fC03 i1="01" i2="X" l="FRE"><s0>Virus syndrome respiratoire aigu sévère</s0>
<s2>NW</s2>
<s5>01</s5>
</fC03>
<fC03 i1="01" i2="X" l="ENG"><s0>Severe acute respiratory syndrome virus</s0>
<s2>NW</s2>
<s5>01</s5>
</fC03>
<fC03 i1="01" i2="X" l="SPA"><s0>Severe acute respiratory syndrome virus</s0>
<s2>NW</s2>
<s5>01</s5>
</fC03>
<fC03 i1="02" i2="X" l="FRE"><s0>Chiroptera</s0>
<s2>NS</s2>
<s5>02</s5>
</fC03>
<fC03 i1="02" i2="X" l="ENG"><s0>Chiroptera</s0>
<s2>NS</s2>
<s5>02</s5>
</fC03>
<fC03 i1="02" i2="X" l="SPA"><s0>Chiroptera</s0>
<s2>NS</s2>
<s5>02</s5>
</fC03>
<fC03 i1="03" i2="X" l="FRE"><s0>Séquence nucléotide</s0>
<s5>05</s5>
</fC03>
<fC03 i1="03" i2="X" l="ENG"><s0>Nucleotide sequence</s0>
<s5>05</s5>
</fC03>
<fC03 i1="03" i2="X" l="SPA"><s0>Secuencia nucleótido</s0>
<s5>05</s5>
</fC03>
<fC03 i1="04" i2="X" l="FRE"><s0>Génétique</s0>
<s5>06</s5>
</fC03>
<fC03 i1="04" i2="X" l="ENG"><s0>Genetics</s0>
<s5>06</s5>
</fC03>
<fC03 i1="04" i2="X" l="SPA"><s0>Genética</s0>
<s5>06</s5>
</fC03>
<fC03 i1="05" i2="X" l="FRE"><s0>Microbiologie</s0>
<s5>07</s5>
</fC03>
<fC03 i1="05" i2="X" l="ENG"><s0>Microbiology</s0>
<s5>07</s5>
</fC03>
<fC03 i1="05" i2="X" l="SPA"><s0>Microbiología</s0>
<s5>07</s5>
</fC03>
<fC03 i1="06" i2="X" l="FRE"><s0>Virologie</s0>
<s5>08</s5>
</fC03>
<fC03 i1="06" i2="X" l="ENG"><s0>Virology</s0>
<s5>08</s5>
</fC03>
<fC03 i1="06" i2="X" l="SPA"><s0>Virología</s0>
<s5>08</s5>
</fC03>
<fC07 i1="01" i2="X" l="FRE"><s0>Coronavirus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="01" i2="X" l="ENG"><s0>Coronavirus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="01" i2="X" l="SPA"><s0>Coronavirus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="02" i2="X" l="FRE"><s0>Coronaviridae</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="02" i2="X" l="ENG"><s0>Coronaviridae</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="02" i2="X" l="SPA"><s0>Coronaviridae</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="03" i2="X" l="FRE"><s0>Nidovirales</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="03" i2="X" l="ENG"><s0>Nidovirales</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="03" i2="X" l="SPA"><s0>Nidovirales</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="04" i2="X" l="FRE"><s0>Virus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="04" i2="X" l="ENG"><s0>Virus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="04" i2="X" l="SPA"><s0>Virus</s0>
<s2>NW</s2>
</fC07>
<fC07 i1="05" i2="X" l="FRE"><s0>Mammalia</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="05" i2="X" l="ENG"><s0>Mammalia</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="05" i2="X" l="SPA"><s0>Mammalia</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="06" i2="X" l="FRE"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="06" i2="X" l="ENG"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="06" i2="X" l="SPA"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fN21><s1>338</s1>
</fN21>
<fN44 i1="01"><s1>OTO</s1>
</fN44>
<fN82><s1>OTO</s1>
</fN82>
</pA>
</standard>
</inist>
<affiliations><list><country><li>Australie</li>
<li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Wuze Ren" sort="Wuze Ren" uniqKey="Wuze Ren" last="Wuze Ren">WUZE REN</name>
</noRegion>
<name sortKey="Guoping Zhao" sort="Guoping Zhao" uniqKey="Guoping Zhao" last="Guoping Zhao">GUOPING ZHAO</name>
<name sortKey="Pei Hao" sort="Pei Hao" uniqKey="Pei Hao" last="Pei Hao">PEI HAO</name>
<name sortKey="Peng Zhou" sort="Peng Zhou" uniqKey="Peng Zhou" last="Peng Zhou">PENG ZHOU</name>
<name sortKey="Shengyue Wang" sort="Shengyue Wang" uniqKey="Shengyue Wang" last="Shengyue Wang">SHENGYUE WANG</name>
<name sortKey="Shengyue Wang" sort="Shengyue Wang" uniqKey="Shengyue Wang" last="Shengyue Wang">SHENGYUE WANG</name>
<name sortKey="Shuyi Zhang" sort="Shuyi Zhang" uniqKey="Shuyi Zhang" last="Shuyi Zhang">SHUYI ZHANG</name>
<name sortKey="Wendong Li" sort="Wendong Li" uniqKey="Wendong Li" last="Wendong Li">WENDONG LI</name>
<name sortKey="Wendong Li" sort="Wendong Li" uniqKey="Wendong Li" last="Wendong Li">WENDONG LI</name>
<name sortKey="Wuze Ren" sort="Wuze Ren" uniqKey="Wuze Ren" last="Wuze Ren">WUZE REN</name>
<name sortKey="Yang Zhong" sort="Yang Zhong" uniqKey="Yang Zhong" last="Yang Zhong">YANG ZHONG</name>
<name sortKey="Yuan Zhang" sort="Yuan Zhang" uniqKey="Yuan Zhang" last="Yuan Zhang">YUAN ZHANG</name>
<name sortKey="Zhengli Shi" sort="Zhengli Shi" uniqKey="Zhengli Shi" last="Zhengli Shi">ZHENGLI SHI</name>
</country>
<country name="Australie"><noRegion><name sortKey="Meng Yu" sort="Meng Yu" uniqKey="Meng Yu" last="Meng Yu">MENG YU</name>
</noRegion>
<name sortKey="Wang, Lin Fa" sort="Wang, Lin Fa" uniqKey="Wang L" first="Lin-Fa" last="Wang">Lin-Fa Wang</name>
</country>
</tree>
</affiliations>
</record>
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