Epidemiological data from the COVID-19 outbreak, real-time case information
Identifieur interne : 003514 ( Ncbi/Merge ); précédent : 003513; suivant : 003515Epidemiological data from the COVID-19 outbreak, real-time case information
Auteurs : Bo Xu [République populaire de Chine, Royaume-Uni] ; Bernardo Gutierrez [Royaume-Uni, Équateur] ; Sumiko Mekaru [États-Unis] ; Kara Sewalk [États-Unis] ; Lauren Goodwin [États-Unis] ; Alyssa Loskill [États-Unis] ; Emily L. Cohn [États-Unis] ; Yulin Hswen [États-Unis] ; Sarah C. Hill [Royaume-Uni] ; Maria M. Cobo [Équateur, Royaume-Uni] ; Alexander E. Zarebski [Royaume-Uni] ; Sabrina Li [Royaume-Uni] ; Chieh-Hsi Wu [Royaume-Uni] ; Erin Hulland [États-Unis] ; Julia D. Morgan [États-Unis] ; Lin Wang [France, Royaume-Uni] ; Katelynn O Rien [États-Unis] ; Samuel V. Scarpino [États-Unis] ; John S. Brownstein [États-Unis] ; Oliver G. Pybus [Royaume-Uni] ; David M. Pigott [États-Unis] ; Moritz U. G. Kraemer [Royaume-Uni, États-Unis]Source :
- Scientific Data [ 2052-4463 ] ; 2020.
Abstract
Cases of a novel coronavirus were first reported in Wuhan, Hubei province, China, in December 2019 and have since spread across the world. Epidemiological studies have indicated human-to-human transmission in China and elsewhere. To aid the analysis and tracking of the COVID-19 epidemic we collected and curated individual-level data from national, provincial, and municipal health reports, as well as additional information from online reports. All data are geo-coded and, where available, include symptoms, key dates (date of onset, admission, and confirmation), and travel history. The generation of detailed, real-time, and robust data for emerging disease outbreaks is important and can help to generate robust evidence that will support and inform public health decision making.
Url:
DOI: 10.1038/s41597-020-0448-0
PubMed: 32210236
PubMed Central: 7093412
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Chine</country><wicri:regionArea>Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Gutierrez, Bernardo" sort="Gutierrez, Bernardo" uniqKey="Gutierrez B" first="Bernardo" last="Gutierrez">Bernardo Gutierrez</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff10"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 9008 4711</institution-id><institution-id institution-id-type="GRID">grid.412251.1</institution-id><institution>School of Biological and Environmental Sciences,</institution><institution>Universidad San Francisco de Quito USFQ,</institution></institution-wrap>Quito, Ecuador</nlm:aff><country xml:lang="fr">Équateur</country><wicri:regionArea>Quito</wicri:regionArea></affiliation></author><author><name sortKey="Mekaru, Sumiko" sort="Mekaru, Sumiko" uniqKey="Mekaru S" first="Sumiko" last="Mekaru">Sumiko Mekaru</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff4"><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2300 1071</institution-id><institution-id institution-id-type="GRID">grid.432410.0</institution-id><institution>Booz Allen Hamilton,</institution></institution-wrap>Westborough Massachusetts, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Westborough Massachusetts</wicri:regionArea></affiliation></author><author><name sortKey="Sewalk, Kara" sort="Sewalk, Kara" uniqKey="Sewalk K" first="Kara" last="Sewalk">Kara Sewalk</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Goodwin, Lauren" sort="Goodwin, Lauren" uniqKey="Goodwin L" first="Lauren" last="Goodwin">Lauren Goodwin</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Loskill, Alyssa" sort="Loskill, Alyssa" 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xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Cohn, Emily L" sort="Cohn, Emily L" uniqKey="Cohn E" first="Emily L." last="Cohn">Emily L. Cohn</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Hswen, Yulin" sort="Hswen, Yulin" uniqKey="Hswen Y" first="Yulin" last="Hswen">Yulin Hswen</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Hill, Sarah C" sort="Hill, Sarah C" uniqKey="Hill S" first="Sarah C." last="Hill">Sarah C. Hill</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Cobo, Maria M" sort="Cobo, Maria M" uniqKey="Cobo M" first="Maria M." last="Cobo">Maria M. Cobo</name><affiliation wicri:level="1"><nlm:aff id="Aff10"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 9008 4711</institution-id><institution-id institution-id-type="GRID">grid.412251.1</institution-id><institution>School of Biological and Environmental Sciences,</institution><institution>Universidad San Francisco de Quito USFQ,</institution></institution-wrap>Quito, Ecuador</nlm:aff><country xml:lang="fr">Équateur</country><wicri:regionArea>Quito</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff12"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Paediatrics,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Zarebski, Alexander E" sort="Zarebski, Alexander E" uniqKey="Zarebski A" first="Alexander E." last="Zarebski">Alexander E. Zarebski</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Li, Sabrina" sort="Li, Sabrina" uniqKey="Li S" first="Sabrina" last="Li">Sabrina Li</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff13"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>School of Geography and the Environment,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Chieh Hsi" sort="Wu, Chieh Hsi" uniqKey="Wu C" first="Chieh-Hsi" last="Wu">Chieh-Hsi Wu</name><affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 9297</institution-id><institution-id institution-id-type="GRID">grid.5491.9</institution-id><institution>Mathematical Sciences,</institution><institution>University of Southampton,</institution></institution-wrap>Southampton, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Southampton</wicri:regionArea></affiliation></author><author><name sortKey="Hulland, Erin" sort="Hulland, Erin" uniqKey="Hulland E" first="Erin" last="Hulland">Erin Hulland</name><affiliation wicri:level="1"><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Department of Health Metrics Sciences,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff14"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Institute for Health Metrics and Evaluation,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation></author><author><name sortKey="Morgan, Julia D" sort="Morgan, Julia D" uniqKey="Morgan J" first="Julia D." last="Morgan">Julia D. Morgan</name><affiliation wicri:level="1"><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Department of Health Metrics Sciences,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff14"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Institute for Health Metrics and Evaluation,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Lin" sort="Wang, Lin" uniqKey="Wang L" first="Lin" last="Wang">Lin Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff7">Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR2000, CNRS, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR2000, CNRS, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff15"><institution-wrap><institution-id institution-id-type="ISNI">0000000121885934</institution-id><institution-id institution-id-type="GRID">grid.5335.0</institution-id><institution>Department of Genetics,</institution><institution>University of Cambridge,</institution></institution-wrap>Cambridge, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cambridge</wicri:regionArea></affiliation></author><author><name sortKey="O Rien, Katelynn" sort="O Rien, Katelynn" uniqKey="O Rien K" first="Katelynn" last="O Rien">Katelynn O Rien</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Scarpino, Samuel V" sort="Scarpino, Samuel V" uniqKey="Scarpino S" first="Samuel V." last="Scarpino">Samuel V. Scarpino</name><affiliation wicri:level="1"><nlm:aff id="Aff8"><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2173 3359</institution-id><institution-id institution-id-type="GRID">grid.261112.7</institution-id><institution>Network Science Institute,</institution><institution>Northeastern University,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Brownstein, John S" sort="Brownstein, John S" uniqKey="Brownstein J" first="John S." last="Brownstein">John S. Brownstein</name><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff9"><institution-wrap><institution-id institution-id-type="ISNI">000000041936754X</institution-id><institution-id institution-id-type="GRID">grid.38142.3c</institution-id><institution>Department of Pediatrics,</institution><institution>Harvard Medical School,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author><author><name sortKey="Pybus, Oliver G" sort="Pybus, Oliver G" uniqKey="Pybus O" first="Oliver G." last="Pybus">Oliver G. Pybus</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation></author><author><name sortKey="Pigott, David M" sort="Pigott, David M" uniqKey="Pigott D" first="David M." last="Pigott">David M. Pigott</name><affiliation wicri:level="1"><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Department of Health Metrics Sciences,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff14"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Institute for Health Metrics and Evaluation,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Seattle</wicri:regionArea></affiliation></author><author><name sortKey="Kraemer, Moritz U G" sort="Kraemer, Moritz U G" uniqKey="Kraemer M" first="Moritz U. G." last="Kraemer">Moritz U. G. Kraemer</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff9"><institution-wrap><institution-id institution-id-type="ISNI">000000041936754X</institution-id><institution-id institution-id-type="GRID">grid.38142.3c</institution-id><institution>Department of Pediatrics,</institution><institution>Harvard Medical School,</institution></institution-wrap>Boston, United States</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Boston</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Data</title><idno type="eISSN">2052-4463</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">Cases of a novel coronavirus were first reported in Wuhan, Hubei province, China, in December 2019 and have since spread across the world. Epidemiological studies have indicated human-to-human transmission in China and elsewhere. To aid the analysis and tracking of the COVID-19 epidemic we collected and curated individual-level data from national, provincial, and municipal health reports, as well as additional information from online reports. All data are geo-coded and, where available, include symptoms, key dates (date of onset, admission, and confirmation), and travel history. The generation of detailed, real-time, and robust data for emerging disease outbreaks is important and can help to generate robust evidence that will support and inform public health decision making.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Xu, B" uniqKey="Xu B">B Xu</name></author><author><name sortKey="Kraemer, Mug" uniqKey="Kraemer M">MUG Kraemer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brownstein, Js" uniqKey="Brownstein J">JS Brownstein</name></author><author><name sortKey="Freifeld, C" uniqKey="Freifeld C">C Freifeld</name></author><author><name sortKey="Madoff, Lc" uniqKey="Madoff L">LC Madoff</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, B" uniqKey="Xu B">B Xu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dong, E" uniqKey="Dong E">E Dong</name></author><author><name sortKey="Du, H" uniqKey="Du H">H Du</name></author><author><name sortKey="Gardner, L" uniqKey="Gardner L">L Gardner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, N" uniqKey="Chen N">N Chen</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Fraser, C" uniqKey="Fraser C">C Fraser</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Kraemer, Mug" uniqKey="Kraemer M">MUG Kraemer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moss, R" uniqKey="Moss R">R Moss</name></author><author><name sortKey="Zarebski, A" uniqKey="Zarebski A">A Zarebski</name></author><author><name sortKey="Dawson, P" uniqKey="Dawson P">P Dawson</name></author><author><name sortKey="Mccaw, Jm" uniqKey="Mccaw J">JM McCaw</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcgowan, Cj" uniqKey="Mcgowan C">CJ McGowan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brooks, Lc" uniqKey="Brooks L">LC Brooks</name></author><author><name sortKey="Farrow, Dc" uniqKey="Farrow D">DC Farrow</name></author><author><name sortKey="Hyun, S" uniqKey="Hyun S">S Hyun</name></author><author><name sortKey="Tibshirani, Rj" uniqKey="Tibshirani R">RJ Tibshirani</name></author><author><name sortKey="Rosenfeld, R" uniqKey="Rosenfeld R">R Rosenfeld</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="data-paper"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Sci Data</journal-id><journal-id journal-id-type="iso-abbrev">Sci Data</journal-id><journal-title-group><journal-title>Scientific Data</journal-title></journal-title-group><issn pub-type="epub">2052-4463</issn><publisher><publisher-name>Nature Publishing Group UK</publisher-name><publisher-loc>London</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">32210236</article-id><article-id pub-id-type="pmc">7093412</article-id><article-id pub-id-type="publisher-id">448</article-id><article-id pub-id-type="doi">10.1038/s41597-020-0448-0</article-id><article-categories><subj-group subj-group-type="heading"><subject>Data Descriptor</subject></subj-group></article-categories><title-group><article-title>Epidemiological data from the COVID-19 outbreak, real-time case information</article-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Xu</surname><given-names>Bo</given-names></name><xref ref-type="aff" rid="Aff1">1</xref><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Gutierrez</surname><given-names>Bernardo</given-names></name><xref ref-type="aff" rid="Aff2">2</xref><xref ref-type="aff" rid="Aff10">10</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Mekaru</surname><given-names>Sumiko</given-names></name><xref ref-type="aff" rid="Aff3">3</xref><xref ref-type="aff" rid="Aff4">4</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Sewalk</surname><given-names>Kara</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Goodwin</surname><given-names>Lauren</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Loskill</surname><given-names>Alyssa</given-names></name><xref ref-type="aff" rid="Aff3">3</xref><xref ref-type="aff" rid="Aff11">11</xref></contrib><contrib contrib-type="author"><name><surname>Cohn</surname><given-names>Emily L.</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">http://orcid.org/0000-0003-3203-1322</contrib-id><name><surname>Hswen</surname><given-names>Yulin</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Hill</surname><given-names>Sarah C.</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Cobo</surname><given-names>Maria M.</given-names></name><xref ref-type="aff" rid="Aff10">10</xref><xref ref-type="aff" rid="Aff12">12</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Zarebski</surname><given-names>Alexander E.</given-names></name><address><email>alexander.zarebski@zoo.ox.ac.uk</email></address><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Sabrina</given-names></name><xref ref-type="aff" rid="Aff2">2</xref><xref ref-type="aff" rid="Aff13">13</xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Chieh-Hsi</given-names></name><xref ref-type="aff" rid="Aff5">5</xref></contrib><contrib contrib-type="author"><name><surname>Hulland</surname><given-names>Erin</given-names></name><xref ref-type="aff" rid="Aff6">6</xref><xref ref-type="aff" rid="Aff14">14</xref></contrib><contrib contrib-type="author"><name><surname>Morgan</surname><given-names>Julia D.</given-names></name><xref ref-type="aff" rid="Aff6">6</xref><xref ref-type="aff" rid="Aff14">14</xref></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Lin</given-names></name><xref ref-type="aff" rid="Aff7">7</xref><xref ref-type="aff" rid="Aff15">15</xref></contrib><contrib contrib-type="author"><name><surname>O’Brien</surname><given-names>Katelynn</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Scarpino</surname><given-names>Samuel V.</given-names></name><xref ref-type="aff" rid="Aff8">8</xref></contrib><contrib contrib-type="author"><name><surname>Brownstein</surname><given-names>John S.</given-names></name><xref ref-type="aff" rid="Aff3">3</xref><xref ref-type="aff" rid="Aff9">9</xref></contrib><contrib contrib-type="author"><name><surname>Pybus</surname><given-names>Oliver G.</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-6731-4034</contrib-id><name><surname>Pigott</surname><given-names>David M.</given-names></name><address><email>pigottdm@uw.edu</email></address><xref ref-type="aff" rid="Aff6">6</xref><xref ref-type="aff" rid="Aff14">14</xref></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">http://orcid.org/0000-0001-8838-7147</contrib-id><name><surname>Kraemer</surname><given-names>Moritz U. G.</given-names></name><address><email>moritz.kraemer@zoo.ox.ac.uk</email></address><xref ref-type="aff" rid="Aff2">2</xref><xref ref-type="aff" rid="Aff3">3</xref><xref ref-type="aff" rid="Aff9">9</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 0662 3178</institution-id><institution-id institution-id-type="GRID">grid.12527.33</institution-id><institution>Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University,</institution></institution-wrap>Beijing, China</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Zoology,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</aff><aff id="Aff3"><label>3</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0378 8438</institution-id><institution-id institution-id-type="GRID">grid.2515.3</institution-id><institution>Computational Epidemiology Lab, Boston Children’s Hospital,</institution></institution-wrap>Boston, United States</aff><aff id="Aff4"><label>4</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2300 1071</institution-id><institution-id institution-id-type="GRID">grid.432410.0</institution-id><institution>Booz Allen Hamilton,</institution></institution-wrap>Westborough Massachusetts, United States</aff><aff id="Aff5"><label>5</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 9297</institution-id><institution-id institution-id-type="GRID">grid.5491.9</institution-id><institution>Mathematical Sciences,</institution><institution>University of Southampton,</institution></institution-wrap>Southampton, United Kingdom</aff><aff id="Aff6"><label>6</label><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Department of Health Metrics Sciences,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</aff><aff id="Aff7"><label>7</label>Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR2000, CNRS, Paris, France</aff><aff id="Aff8"><label>8</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2173 3359</institution-id><institution-id institution-id-type="GRID">grid.261112.7</institution-id><institution>Network Science Institute,</institution><institution>Northeastern University,</institution></institution-wrap>Boston, United States</aff><aff id="Aff9"><label>9</label><institution-wrap><institution-id institution-id-type="ISNI">000000041936754X</institution-id><institution-id institution-id-type="GRID">grid.38142.3c</institution-id><institution>Department of Pediatrics,</institution><institution>Harvard Medical School,</institution></institution-wrap>Boston, United States</aff><aff id="Aff10"><label>10</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 9008 4711</institution-id><institution-id institution-id-type="GRID">grid.412251.1</institution-id><institution>School of Biological and Environmental Sciences,</institution><institution>Universidad San Francisco de Quito USFQ,</institution></institution-wrap>Quito, Ecuador</aff><aff id="Aff11"><label>11</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 7558</institution-id><institution-id institution-id-type="GRID">grid.189504.1</institution-id><institution>School of Public Health,</institution><institution>Boston University,</institution></institution-wrap>Boston, United States</aff><aff id="Aff12"><label>12</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>Department of Paediatrics,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</aff><aff id="Aff13"><label>13</label><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1936 8948</institution-id><institution-id institution-id-type="GRID">grid.4991.5</institution-id><institution>School of Geography and the Environment,</institution><institution>University of Oxford,</institution></institution-wrap>Oxford, United Kingdom</aff><aff id="Aff14"><label>14</label><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Institute for Health Metrics and Evaluation,</institution><institution>University of Washington,</institution></institution-wrap>Seattle, United States</aff><aff id="Aff15"><label>15</label><institution-wrap><institution-id institution-id-type="ISNI">0000000121885934</institution-id><institution-id institution-id-type="GRID">grid.5335.0</institution-id><institution>Department of Genetics,</institution><institution>University of Cambridge,</institution></institution-wrap>Cambridge, United Kingdom</aff></contrib-group><pub-date pub-type="epub"><day>24</day><month>3</month><year>2020</year></pub-date><pub-date pub-type="pmc-release"><day>24</day><month>3</month><year>2020</year></pub-date><pub-date pub-type="collection"><year>2020</year></pub-date><volume>7</volume><elocation-id>106</elocation-id><history><date date-type="received"><day>31</day><month>1</month><year>2020</year></date><date date-type="accepted"><day>12</day><month>3</month><year>2020</year></date></history><permissions><copyright-statement>© The Author(s) 2020</copyright-statement><license license-type="OpenAccess"><license-p><bold>Open Access</bold> This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>.</license-p><license-p>The Creative Commons Public Domain Dedication waiver <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">http://creativecommons.org/publicdomain/zero/1.0/</ext-link> applies to the metadata files associated with this article.</license-p></license></permissions><abstract id="Abs1"><p id="Par1">Cases of a novel coronavirus were first reported in Wuhan, Hubei province, China, in December 2019 and have since spread across the world. Epidemiological studies have indicated human-to-human transmission in China and elsewhere. To aid the analysis and tracking of the COVID-19 epidemic we collected and curated individual-level data from national, provincial, and municipal health reports, as well as additional information from online reports. All data are geo-coded and, where available, include symptoms, key dates (date of onset, admission, and confirmation), and travel history. The generation of detailed, real-time, and robust data for emerging disease outbreaks is important and can help to generate robust evidence that will support and inform public health decision making.</p></abstract><abstract id="Abs2" abstract-type="summary"><p id="Par2"><table-wrap id="Taba"><table frame="hsides" rules="groups"><tbody><tr><td>Measurement(s)</td><td>coronavirus infectious disease • Viral Epidemiology</td></tr><tr><td>Technology Type(s)</td><td>digital curation</td></tr><tr><td>Factor Type(s)</td><td>geolocation • date • travel history • age • sex</td></tr><tr><td>Sample Characteristic - Organism</td><td>Homo sapiens • SARS-CoV-2 • Betacoronavirus</td></tr></tbody></table></table-wrap></p><p id="Par3">Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.11974344</p></abstract><kwd-group kwd-group-type="npg-subject"><title>Subject terms</title><kwd>Viral infection</kwd><kwd>Epidemiology</kwd><kwd>Viral epidemiology</kwd><kwd>Risk factors</kwd></kwd-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© The Author(s) 2020</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>France</li><li>Royaume-Uni</li><li>République populaire de Chine</li><li>Équateur</li><li>États-Unis</li></country><region><li>Île-de-France</li></region><settlement><li>Paris</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name></noRegion></country><country name="Royaume-Uni"><noRegion><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name></noRegion><name sortKey="Cobo, Maria M" sort="Cobo, Maria M" uniqKey="Cobo M" first="Maria M." last="Cobo">Maria M. Cobo</name><name sortKey="Gutierrez, Bernardo" sort="Gutierrez, Bernardo" uniqKey="Gutierrez B" first="Bernardo" last="Gutierrez">Bernardo Gutierrez</name><name sortKey="Hill, Sarah C" sort="Hill, Sarah C" uniqKey="Hill S" first="Sarah C." last="Hill">Sarah C. Hill</name><name sortKey="Kraemer, Moritz U G" sort="Kraemer, Moritz U G" uniqKey="Kraemer M" first="Moritz U. G." last="Kraemer">Moritz U. G. Kraemer</name><name sortKey="Li, Sabrina" sort="Li, Sabrina" uniqKey="Li S" first="Sabrina" last="Li">Sabrina Li</name><name sortKey="Li, Sabrina" sort="Li, Sabrina" uniqKey="Li S" first="Sabrina" last="Li">Sabrina Li</name><name sortKey="Pybus, Oliver G" sort="Pybus, Oliver G" uniqKey="Pybus O" first="Oliver G." last="Pybus">Oliver G. Pybus</name><name sortKey="Wang, Lin" sort="Wang, Lin" uniqKey="Wang L" first="Lin" last="Wang">Lin Wang</name><name sortKey="Wu, Chieh Hsi" sort="Wu, Chieh Hsi" uniqKey="Wu C" first="Chieh-Hsi" last="Wu">Chieh-Hsi Wu</name><name sortKey="Zarebski, Alexander E" sort="Zarebski, Alexander E" uniqKey="Zarebski A" first="Alexander E." last="Zarebski">Alexander E. Zarebski</name></country><country name="Équateur"><noRegion><name sortKey="Gutierrez, Bernardo" sort="Gutierrez, Bernardo" uniqKey="Gutierrez B" first="Bernardo" last="Gutierrez">Bernardo Gutierrez</name></noRegion><name sortKey="Cobo, Maria M" sort="Cobo, Maria M" uniqKey="Cobo M" first="Maria M." last="Cobo">Maria M. Cobo</name></country><country name="États-Unis"><noRegion><name sortKey="Mekaru, Sumiko" sort="Mekaru, Sumiko" uniqKey="Mekaru S" first="Sumiko" last="Mekaru">Sumiko Mekaru</name></noRegion><name sortKey="Brownstein, John S" sort="Brownstein, John S" uniqKey="Brownstein J" first="John S." last="Brownstein">John S. Brownstein</name><name sortKey="Brownstein, John S" sort="Brownstein, John S" uniqKey="Brownstein J" first="John S." last="Brownstein">John S. Brownstein</name><name sortKey="Cohn, Emily L" sort="Cohn, Emily L" uniqKey="Cohn E" first="Emily L." last="Cohn">Emily L. Cohn</name><name sortKey="Goodwin, Lauren" sort="Goodwin, Lauren" uniqKey="Goodwin L" first="Lauren" last="Goodwin">Lauren Goodwin</name><name sortKey="Hswen, Yulin" sort="Hswen, Yulin" uniqKey="Hswen Y" first="Yulin" last="Hswen">Yulin Hswen</name><name sortKey="Hulland, Erin" sort="Hulland, Erin" uniqKey="Hulland E" first="Erin" last="Hulland">Erin Hulland</name><name sortKey="Hulland, Erin" sort="Hulland, Erin" uniqKey="Hulland E" first="Erin" last="Hulland">Erin Hulland</name><name sortKey="Kraemer, Moritz U G" sort="Kraemer, Moritz U G" uniqKey="Kraemer M" first="Moritz U. G." last="Kraemer">Moritz U. G. Kraemer</name><name sortKey="Kraemer, Moritz U G" sort="Kraemer, Moritz U G" uniqKey="Kraemer M" first="Moritz U. G." last="Kraemer">Moritz U. G. Kraemer</name><name sortKey="Loskill, Alyssa" sort="Loskill, Alyssa" uniqKey="Loskill A" first="Alyssa" last="Loskill">Alyssa Loskill</name><name sortKey="Loskill, Alyssa" sort="Loskill, Alyssa" uniqKey="Loskill A" first="Alyssa" last="Loskill">Alyssa Loskill</name><name sortKey="Mekaru, Sumiko" sort="Mekaru, Sumiko" uniqKey="Mekaru S" first="Sumiko" last="Mekaru">Sumiko Mekaru</name><name sortKey="Morgan, Julia D" sort="Morgan, Julia D" uniqKey="Morgan J" first="Julia D." last="Morgan">Julia D. Morgan</name><name sortKey="Morgan, Julia D" sort="Morgan, Julia D" uniqKey="Morgan J" first="Julia D." last="Morgan">Julia D. Morgan</name><name sortKey="O Rien, Katelynn" sort="O Rien, Katelynn" uniqKey="O Rien K" first="Katelynn" last="O Rien">Katelynn O Rien</name><name sortKey="Pigott, David M" sort="Pigott, David M" uniqKey="Pigott D" first="David M." last="Pigott">David M. Pigott</name><name sortKey="Pigott, David M" sort="Pigott, David M" uniqKey="Pigott D" first="David M." last="Pigott">David M. Pigott</name><name sortKey="Scarpino, Samuel V" sort="Scarpino, Samuel V" uniqKey="Scarpino S" first="Samuel V." last="Scarpino">Samuel V. Scarpino</name><name sortKey="Sewalk, Kara" sort="Sewalk, Kara" uniqKey="Sewalk K" first="Kara" last="Sewalk">Kara Sewalk</name></country><country name="France"><region name="Île-de-France"><name sortKey="Wang, Lin" sort="Wang, Lin" uniqKey="Wang L" first="Lin" last="Wang">Lin Wang</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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