Prevalence and Genetic Diversity of Coronaviruses in Bats from China
Identifieur interne : 001574 ( Ncbi/Curation ); précédent : 001573; suivant : 001575Prevalence and Genetic Diversity of Coronaviruses in Bats from China
Auteurs : X. C. Tang ; J. X. Zhang ; S. Y. Zhang ; P. Wang ; X. H. Fan ; L. F. Li ; G. Li ; B. Q. Dong ; W. Liu ; C. L. Cheung ; K. M. Xu ; W. J. Song ; D. Vijaykrishna ; L. L. M. Poon ; J. S. M. Peiris ; G. J. D. Smith ; H. Chen ; Y. GuanSource :
- Journal of Virology [ 0022-538X ] ; 2006.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence d'ADN, Animaux, Chine, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Données de séquences moléculaires, Génome viral, Phylogénie, Protéines virales (génétique), Prévalence, Variation génétique, Évolution moléculaire.
- MESH :
- génétique : ARN viral, Coronavirus, Protéines virales.
- isolement et purification : Coronavirus.
- virologie : Chiroptera.
- Analyse de séquence d'ADN, Animaux, Chine, Coronavirus, Données de séquences moléculaires, Génome viral, Phylogénie, Prévalence, Variation génétique, Évolution moléculaire.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Animals, China, Chiroptera (virology), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Evolution, Molecular, Genetic Variation, Genome, Viral, Molecular Sequence Data, Phylogeny, Prevalence, RNA, Viral (genetics), Sequence Analysis, DNA, Viral Proteins (genetics).
- MESH :
- chemical , genetics : RNA, Viral, Viral Proteins.
- geographic : China.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- virology : Chiroptera.
- Animals, Evolution, Molecular, Genetic Variation, Genome, Viral, Molecular Sequence Data, Phylogeny, Prevalence, Sequence Analysis, DNA.
Abstract
Coronaviruses can infect a variety of animals including poultry, livestock, and humans and are currently classified into three groups. The interspecies transmissions of coronaviruses between different hosts form a complex ecosystem of which little is known. The outbreak of severe acute respiratory syndrome (SARS) and the recent identification of new coronaviruses have highlighted the necessity for further investigation of coronavirus ecology, in particular the role of bats and other wild animals. In this study, we sampled bat populations in 15 provinces of China and reveal that approximately 6.5% of the bats, from diverse species distributed throughout the region, harbor coronaviruses. Full genomes of four coronavirues from bats were sequenced and analyzed. Phylogenetic analyses of the spike, envelope, membrane, and nucleoprotein structural proteins and the two conserved replicase domains, putative RNA-dependent RNA polymerase and RNA helicase, revealed that bat coronaviruses cluster in three different groups: group 1, another group that includes all SARS and SARS-like coronaviruses (putative group 4), and an independent bat coronavirus group (putative group 5). Further genetic analyses showed that different species of bats maintain coronaviruses from different groups and that a single bat species from different geographic locations supports similar coronaviruses. Thus, the findings of this study suggest that bats may play an integral role in the ecology and evolution of coronaviruses.
Url:
DOI: 10.1128/JVI.00697-06
PubMed: 16840328
PubMed Central: 1563713
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PMC:1563713Le document en format XML
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C." last="Tang">X. C. Tang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, J X" sort="Zhang, J X" uniqKey="Zhang J" first="J. X." last="Zhang">J. X. Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, S Y" sort="Zhang, S Y" uniqKey="Zhang S" first="S. Y." last="Zhang">S. Y. Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Wang, P" sort="Wang, P" uniqKey="Wang P" first="P." last="Wang">P. Wang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Fan, X H" sort="Fan, X H" uniqKey="Fan X" first="X. H." last="Fan">X. H. Fan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, L F" sort="Li, L F" uniqKey="Li L" first="L. F." last="Li">L. F. 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Chen</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Guan, Y" sort="Guan, Y" uniqKey="Guan Y" first="Y." last="Guan">Y. Guan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">Journal of Virology</title><idno type="ISSN">0022-538X</idno><idno type="eISSN">1098-5514</idno><imprint><date when="2006">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>China</term><term>Chiroptera (virology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Prevalence</term><term>RNA, Viral (genetics)</term><term>Sequence Analysis, DNA</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chine</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Données de séquences moléculaires</term><term>Génome viral</term><term>Phylogénie</term><term>Protéines virales (génétique)</term><term>Prévalence</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Coronavirus</term><term>Protéines virales</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Prevalence</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chine</term><term>Coronavirus</term><term>Données de séquences moléculaires</term><term>Génome viral</term><term>Phylogénie</term><term>Prévalence</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Coronaviruses can infect a variety of animals including poultry, livestock, and humans and are currently classified into three groups. The interspecies transmissions of coronaviruses between different hosts form a complex ecosystem of which little is known. The outbreak of severe acute respiratory syndrome (SARS) and the recent identification of new coronaviruses have highlighted the necessity for further investigation of coronavirus ecology, in particular the role of bats and other wild animals. In this study, we sampled bat populations in 15 provinces of China and reveal that approximately 6.5% of the bats, from diverse species distributed throughout the region, harbor coronaviruses. Full genomes of four coronavirues from bats were sequenced and analyzed. Phylogenetic analyses of the spike, envelope, membrane, and nucleoprotein structural proteins and the two conserved replicase domains, putative RNA-dependent RNA polymerase and RNA helicase, revealed that bat coronaviruses cluster in three different groups: group 1, another group that includes all SARS and SARS-like coronaviruses (putative group 4), and an independent bat coronavirus group (putative group 5). Further genetic analyses showed that different species of bats maintain coronaviruses from different groups and that a single bat species from different geographic locations supports similar coronaviruses. Thus, the findings of this study suggest that bats may play an integral role in the ecology and evolution of coronaviruses.</p></div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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