Prediction of quaternary assembly of SARS coronavirus peplomer
Identifieur interne : 000C22 ( Ncbi/Curation ); précédent : 000C21; suivant : 000C23Prediction of quaternary assembly of SARS coronavirus peplomer
Auteurs : Andrea Bernini [Italie] ; Ottavia Spiga [Italie] ; Arianna Ciutti [Italie] ; Stefano Chiellini [Italie] ; Luisa Bracci [Italie] ; Xiyun Yan [République populaire de Chine] ; Bojian Zheng [République populaire de Chine] ; Jiandong Huang [République populaire de Chine] ; Ming-Liang He [République populaire de Chine] ; Huai-Dong Song [République populaire de Chine] ; Pei Hao [République populaire de Chine] ; Guoping Zhao [République populaire de Chine] ; Neri Niccolai [Italie]Source :
- Biochemical and Biophysical Research Communications [ 0006-291X ] ; 2004.
Abstract
The tertiary structures of the S1 and S2 domains of the spike protein of the coronavirus which is responsible of the severe acute respiratory syndrome (SARS) have been recently predicted. Here a molecular assembly of SARS coronavirus peplomer which accounts for the available functional data is suggested. The interaction between S1 and S2 appears to be stabilised by a large hydrophobic network of aromatic side chains present in both domains. This feature results to be common to all coronaviruses, suggesting potential targeting for drugs preventing coronavirus-related infections.
Url:
DOI: 10.1016/j.bbrc.2004.10.156
PubMed: 15555555
PubMed Central: 7092937
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Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Ciutti, Arianna" sort="Ciutti, Arianna" uniqKey="Ciutti A" first="Arianna" last="Ciutti">Arianna Ciutti</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Chiellini, Stefano" sort="Chiellini, Stefano" uniqKey="Chiellini S" first="Stefano" last="Chiellini">Stefano Chiellini</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Bracci, Luisa" sort="Bracci, Luisa" uniqKey="Bracci L" first="Luisa" last="Bracci">Luisa Bracci</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Yan, Xiyun" 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Kong</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Jiandong" sort="Huang, Jiandong" uniqKey="Huang J" first="Jiandong" last="Huang">Jiandong Huang</name><affiliation wicri:level="1"><nlm:aff id="aff4">Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="He, Ming Liang" sort="He, Ming Liang" uniqKey="He M" first="Ming-Liang" last="He">Ming-Liang He</name><affiliation wicri:level="1"><nlm:aff id="aff5">Institute of Molecular Biology, The University of Hong Kong, Pokfulam, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Molecular Biology, The University of Hong Kong, Pokfulam, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Song, Huai Dong" sort="Song, Huai Dong" uniqKey="Song H" first="Huai-Dong" last="Song">Huai-Dong Song</name><affiliation wicri:level="1"><nlm:aff id="aff6">State Key Laboratory for Medical Genomics, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Medical Genomics, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Hao, Pei" sort="Hao, Pei" uniqKey="Hao P" first="Pei" last="Hao">Pei Hao</name><affiliation wicri:level="1"><nlm:aff id="aff7">Shanghai Center for Bioinformation Technology, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Center for Bioinformation Technology, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Guoping" sort="Zhao, Guoping" uniqKey="Zhao G" first="Guoping" last="Zhao">Guoping Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff8">Chinese National Human Genome Center at Shanghai, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Chinese National Human Genome Center at Shanghai, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Niccolai, Neri" sort="Niccolai, Neri" uniqKey="Niccolai N" first="Neri" last="Niccolai">Neri Niccolai</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, 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type="wicri:Area/Ncbi/Curation">000C22</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Prediction of quaternary assembly of SARS coronavirus peplomer</title><author><name sortKey="Bernini, Andrea" sort="Bernini, Andrea" uniqKey="Bernini A" first="Andrea" last="Bernini">Andrea Bernini</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Spiga, Ottavia" sort="Spiga, Ottavia" uniqKey="Spiga O" first="Ottavia" last="Spiga">Ottavia Spiga</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Ciutti, Arianna" sort="Ciutti, Arianna" uniqKey="Ciutti A" first="Arianna" last="Ciutti">Arianna Ciutti</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Chiellini, Stefano" sort="Chiellini, Stefano" uniqKey="Chiellini S" first="Stefano" last="Chiellini">Stefano Chiellini</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Bracci, Luisa" sort="Bracci, Luisa" uniqKey="Bracci L" first="Luisa" last="Bracci">Luisa Bracci</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author><author><name sortKey="Yan, Xiyun" sort="Yan, Xiyun" uniqKey="Yan X" first="Xiyun" last="Yan">Xiyun Yan</name><affiliation wicri:level="3"><nlm:aff id="aff2">National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zheng, Bojian" sort="Zheng, Bojian" uniqKey="Zheng B" first="Bojian" last="Zheng">Bojian Zheng</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Pokfulam, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong, Pokfulam, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Jiandong" sort="Huang, Jiandong" uniqKey="Huang J" first="Jiandong" last="Huang">Jiandong Huang</name><affiliation wicri:level="1"><nlm:aff id="aff4">Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="He, Ming Liang" sort="He, Ming Liang" uniqKey="He M" first="Ming-Liang" last="He">Ming-Liang He</name><affiliation wicri:level="1"><nlm:aff id="aff5">Institute of Molecular Biology, The University of Hong Kong, Pokfulam, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Molecular Biology, The University of Hong Kong, Pokfulam, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Song, Huai Dong" sort="Song, Huai Dong" uniqKey="Song H" first="Huai-Dong" last="Song">Huai-Dong Song</name><affiliation wicri:level="1"><nlm:aff id="aff6">State Key Laboratory for Medical Genomics, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Medical Genomics, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Hao, Pei" sort="Hao, Pei" uniqKey="Hao P" first="Pei" last="Hao">Pei Hao</name><affiliation wicri:level="1"><nlm:aff id="aff7">Shanghai Center for Bioinformation Technology, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Center for Bioinformation Technology, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Guoping" sort="Zhao, Guoping" uniqKey="Zhao G" first="Guoping" last="Zhao">Guoping Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff8">Chinese National Human Genome Center at Shanghai, Shanghai, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Chinese National Human Genome Center at Shanghai, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Niccolai, Neri" sort="Niccolai, Neri" uniqKey="Niccolai N" first="Neri" last="Niccolai">Neri Niccolai</name><affiliation wicri:level="1"><nlm:aff id="aff1">Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Molecular Biology, Biomolecular Structure Research Center, University of Siena, I-53100 Siena</wicri:regionArea><wicri:noRegion>I-53100 Siena</wicri:noRegion></affiliation></author></analytic><series><title level="j">Biochemical and Biophysical Research Communications</title><idno type="ISSN">0006-291X</idno><idno type="eISSN">1090-2104</idno><imprint><date when="2004">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The tertiary structures of the S1 and S2 domains of the spike protein of the coronavirus which is responsible of the severe acute respiratory syndrome (SARS) have been recently predicted. Here a molecular assembly of SARS coronavirus peplomer which accounts for the available functional data is suggested. The interaction between S1 and S2 appears to be stabilised by a large hydrophobic network of aromatic side chains present in both domains. This feature results to be common to all coronaviruses, suggesting potential targeting for drugs preventing coronavirus-related infections.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Brown, E G" uniqKey="Brown E">E.G. Brown</name></author><author><name sortKey="Tetro, J A" uniqKey="Tetro J">J.A. Tetro</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, H" uniqKey="Yang H">H. Yang</name></author><author><name sortKey="Yang, M" uniqKey="Yang M">M. Yang</name></author><author><name sortKey="Ding, Y" uniqKey="Ding Y">Y. Ding</name></author><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y. 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