Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.
Identifieur interne : 000790 ( Ncbi/Checkpoint ); précédent : 000789; suivant : 000791Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.
Auteurs : W H Lee [Singapour] ; V B VegaSource :
- Bioinformatics (Oxford, England) [ 1367-4803 ] ; 2004.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
Abstract
A modification to Phred and program to detect heterogeneous positions, which is particularly useful in the identification of mutations and other abnormalities in Phred/Phrap genome assemblies.
DOI: 10.1093/bioinformatics/bth301
PubMed: 15130927
Affiliations:
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pubmed:15130927Le document en format XML
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<author><name sortKey="Lee, W H" sort="Lee, W H" uniqKey="Lee W" first="W H" last="Lee">W H Lee</name>
<affiliation wicri:level="1"><nlm:affiliation>Genome Institute of Singapore, Information and Mathematical Sciences, Singapore, 138672, Singapore. leewhc@gis.a-star.edu.sg</nlm:affiliation>
<country xml:lang="fr">Singapour</country>
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<series><title level="j">Bioinformatics (Oxford, England)</title>
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<term>Consensus Sequence</term>
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<term>Genetic Heterogeneity</term>
<term>SARS Virus (genetics)</term>
<term>Sequence Alignment (methods)</term>
<term>Sequence Analysis, DNA (methods)</term>
<term>Sequence Homology, Nucleic Acid</term>
<term>Software</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Algorithmes</term>
<term>Alignement de séquences ()</term>
<term>Analyse de mutations d'ADN ()</term>
<term>Analyse de séquence d'ADN ()</term>
<term>Hétérogénéité génétique</term>
<term>Logiciel</term>
<term>Mésappariement de bases</term>
<term>Similitude de séquences d'acides nucléiques</term>
<term>Séquence consensus</term>
<term>Virus du SRAS (génétique)</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>DNA Mutational Analysis</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
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<term>Base Pair Mismatch</term>
<term>Consensus Sequence</term>
<term>Genetic Heterogeneity</term>
<term>Sequence Homology, Nucleic Acid</term>
<term>Software</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Algorithmes</term>
<term>Alignement de séquences</term>
<term>Analyse de mutations d'ADN</term>
<term>Analyse de séquence d'ADN</term>
<term>Hétérogénéité génétique</term>
<term>Logiciel</term>
<term>Mésappariement de bases</term>
<term>Similitude de séquences d'acides nucléiques</term>
<term>Séquence consensus</term>
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<front><div type="abstract" xml:lang="en">A modification to Phred and program to detect heterogeneous positions, which is particularly useful in the identification of mutations and other abnormalities in Phred/Phrap genome assemblies.</div>
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