A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene
Identifieur interne : 001095 ( Main/Merge ); précédent : 001094; suivant : 001096A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene
Auteurs : Canping Huang [République populaire de Chine] ; William J. Liu [République populaire de Chine] ; Wen Xu [République populaire de Chine] ; Tao Jin [République populaire de Chine] ; Yingze Zhao [République populaire de Chine] ; Jingdong Song [République populaire de Chine] ; Yi Shi [République populaire de Chine] ; Wei Ji [République populaire de Chine] ; Hao Jia [République populaire de Chine] ; Yongming Zhou [République populaire de Chine] ; Honghua Wen [République populaire de Chine] ; Honglan Zhao [République populaire de Chine] ; Huaxing Liu [République populaire de Chine] ; Hong Li [République populaire de Chine] ; Qihui Wang [République populaire de Chine] ; Ying Wu [République populaire de Chine] ; Liang Wang [République populaire de Chine] ; Di Liu [République populaire de Chine] ; Guang Liu [République populaire de Chine] ; Hongjie Yu [République populaire de Chine] ; Edward C. Holmes [Australie] ; Lin Lu [République populaire de Chine] ; George F. Gao [République populaire de Chine]Source :
- PLoS Pathogens [ 1553-7366 ] ; 2016.
Abstract
The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of
Url:
DOI: 10.1371/journal.ppat.1005883
PubMed: 27676249
PubMed Central: 5038965
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PMC:5038965Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene</title>
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<wicri:noRegion>Kunming Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jin, Tao" sort="Jin, Tao" uniqKey="Jin T" first="Tao" last="Jin">Tao Jin</name>
<affiliation wicri:level="3"><nlm:aff id="aff004"><addr-line>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen</wicri:regionArea>
<placeName><settlement type="city">Shenzhen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Zhao, Yingze" sort="Zhao, Yingze" uniqKey="Zhao Y" first="Yingze" last="Zhao">Yingze Zhao</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Song, Jingdong" sort="Song, Jingdong" uniqKey="Song J" first="Jingdong" last="Song">Jingdong Song</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Shi, Yi" sort="Shi, Yi" uniqKey="Shi Y" first="Yi" last="Shi">Yi Shi</name>
<affiliation wicri:level="3"><nlm:aff id="aff005"><addr-line>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ji, Wei" sort="Ji, Wei" uniqKey="Ji W" first="Wei" last="Ji">Wei Ji</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Jia, Hao" sort="Jia, Hao" uniqKey="Jia H" first="Hao" last="Jia">Hao Jia</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou</wicri:regionArea>
<wicri:noRegion>Wenzhou</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhou, Yongming" sort="Zhou, Yongming" uniqKey="Zhou Y" first="Yongming" last="Zhou">Yongming Zhou</name>
<affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan</wicri:regionArea>
<wicri:noRegion>Kunming Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wen, Honghua" sort="Wen, Honghua" uniqKey="Wen H" first="Honghua" last="Wen">Honghua Wen</name>
<affiliation wicri:level="1"><nlm:aff id="aff006"><addr-line>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan</wicri:regionArea>
<wicri:noRegion>Mengla Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhao, Honglan" sort="Zhao, Honglan" uniqKey="Zhao H" first="Honglan" last="Zhao">Honglan Zhao</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liu, Huaxing" sort="Liu, Huaxing" uniqKey="Liu H" first="Huaxing" last="Liu">Huaxing Liu</name>
<affiliation wicri:level="1"><nlm:aff id="aff006"><addr-line>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan</wicri:regionArea>
<wicri:noRegion>Mengla Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Hong" sort="Li, Hong" uniqKey="Li H" first="Hong" last="Li">Hong Li</name>
<affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan</wicri:regionArea>
<wicri:noRegion>Kunming Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Qihui" sort="Wang, Qihui" uniqKey="Wang Q" first="Qihui" last="Wang">Qihui Wang</name>
<affiliation wicri:level="3"><nlm:aff id="aff007"><addr-line>CAS Key Laboratory of Microbial and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Microbial and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wu, Ying" sort="Wu, Ying" uniqKey="Wu Y" first="Ying" last="Wu">Ying Wu</name>
<affiliation wicri:level="3"><nlm:aff id="aff005"><addr-line>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wang, Liang" sort="Wang, Liang" uniqKey="Wang L" first="Liang" last="Wang">Liang Wang</name>
<affiliation wicri:level="3"><nlm:aff id="aff005"><addr-line>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liu, Di" sort="Liu, Di" uniqKey="Liu D" first="Di" last="Liu">Di Liu</name>
<affiliation wicri:level="3"><nlm:aff id="aff005"><addr-line>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff008"><addr-line>Network Information Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Network Information Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Liu, Guang" sort="Liu, Guang" uniqKey="Liu G" first="Guang" last="Liu">Guang Liu</name>
<affiliation wicri:level="3"><nlm:aff id="aff004"><addr-line>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen</wicri:regionArea>
<placeName><settlement type="city">Shenzhen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yu, Hongjie" sort="Yu, Hongjie" uniqKey="Yu H" first="Hongjie" last="Yu">Hongjie Yu</name>
<affiliation wicri:level="3"><nlm:aff id="aff009"><addr-line>Division of Infectious Disease, Key Laboratory of Surveillance and Early-warning on Infectious Disease, Chinese Centre for Disease Control and Prevention, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Division of Infectious Disease, Key Laboratory of Surveillance and Early-warning on Infectious Disease, Chinese Centre for Disease Control and Prevention, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name>
<affiliation wicri:level="4"><nlm:aff id="aff010"><addr-line>Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia</addr-line>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName><settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lu, Lin" sort="Lu, Lin" uniqKey="Lu L" first="Lin" last="Lu">Lin Lu</name>
<affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan</wicri:regionArea>
<wicri:noRegion>Kunming Yunnan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Gao, George F" sort="Gao, George F" uniqKey="Gao G" first="George F." last="Gao">George F. Gao</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou</wicri:regionArea>
<wicri:noRegion>Wenzhou</wicri:noRegion>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff005"><addr-line>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff011"><addr-line>Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin</wicri:regionArea>
<placeName><settlement type="city">Tianjin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff012"><addr-line>Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff013"><addr-line>Office of Director-General, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Office of Director-General, Chinese Center for Disease Control and Prevention (China CDC), Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS Pathogens</title>
<idno type="ISSN">1553-7366</idno>
<idno type="eISSN">1553-7374</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
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<profileDesc><textClass></textClass>
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<front><div type="abstract" xml:lang="en"><p>The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of <italic>Rousettus leschenaulti</italic>
bats by using pan-coronavirus RT-PCR and next-generation sequencing. Although the virus is similar to Rousettus bat coronavirus HKU9 (Ro-BatCoV HKU9) in genome characteristics, it is sufficiently distinct to be classified as a new species according to the criteria defined by the International Committee of Taxonomy of Viruses (ICTV). More striking was that Ro-BatCoV GCCDC1 contained a unique gene integrated into the 3’-end of the genome that has no homologs in any known coronavirus, but which sequence and phylogeny analyses indicated most likely originated from the p10 gene of a bat orthoreovirus. Subgenomic mRNA and cellular-level observations demonstrated that the p10 gene is functional and induces the formation of cell syncytia. Therefore, here we report a putative heterologous inter-family recombination event between a single-stranded, positive-sense RNA virus and a double-stranded segmented RNA virus, providing insights into the fundamental mechanisms of viral evolution.</p>
</div>
</front>
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