SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world.
Identifieur interne : 000C46 ( Main/Merge ); précédent : 000C45; suivant : 000C47SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world.
Auteurs : Meriadeg Ar Gouilh [France] ; Sébastien J. Puechmaille [France] ; Laure Diancourt [France] ; Mathias Vandenbogaert [France] ; Jordi Serra-Cobo [Espagne] ; Marc Lopez Roïg [Espagne] ; Paul Brown [France] ; François Moutou [France] ; Valérie Caro [France] ; Astrid Vabret [France] ; Jean-Claude Manuguerra [France]Source :
- Virology [ 1096-0341 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus du SRAS.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Animaux, Phylogénie, Variation génétique.
English descriptors
- KwdEn :
- Alphacoronavirus (genetics), Alphacoronavirus (isolation & purification), Animals, Betacoronavirus (genetics), Betacoronavirus (isolation & purification), Chiroptera (virology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Genetic Variation, Phylogeny, SARS Virus (genetics).
- MESH :
- genetics : Alphacoronavirus, Betacoronavirus, SARS Virus.
- isolation & purification : Alphacoronavirus, Betacoronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Genetic Variation, Phylogeny.
Abstract
The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related Betacoronavirus in Rhinolophus ferrumequinum were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.
Url:
DOI: 10.1016/j.virol.2018.01.014
PubMed: 29482919
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pubmed:29482919Le document en format XML
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Recherche sur l'Adaptation Microbienne, 14000, Caen, France. Electronic address: meriadeg.le-gouil@pasteur.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France; Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen</wicri:regionArea><placeName><region type="region" nuts="2">Région Normandie</region><region type="old region" nuts="2">Basse-Normandie</region><settlement type="city">Caen</settlement></placeName></affiliation></author><author><name sortKey="Puechmaille, Sebastien J" sort="Puechmaille, Sebastien J" uniqKey="Puechmaille S" first="Sébastien J" last="Puechmaille">Sébastien J. Puechmaille</name><affiliation wicri:level="3"><nlm:affiliation>Greifswald University, 17489, Greifswald, Germany; University College Dublin, Belfield, Dublin 4, Ireland; Chauves-souris Aveyron, 12310, Vimenet, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Greifswald University, 17489, Greifswald, Germany; University College Dublin, Belfield, Dublin 4, Ireland; Chauves-souris Aveyron, 12310, Vimenet</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Midi-Pyrénées</region><settlement type="city">Vimenet</settlement></placeName></affiliation></author><author><name sortKey="Diancourt, Laure" sort="Diancourt, Laure" uniqKey="Diancourt L" first="Laure" last="Diancourt">Laure Diancourt</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Vandenbogaert, Mathias" sort="Vandenbogaert, Mathias" uniqKey="Vandenbogaert M" first="Mathias" last="Vandenbogaert">Mathias Vandenbogaert</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Serra Cobo, Jordi" sort="Serra Cobo, Jordi" uniqKey="Serra Cobo J" first="Jordi" last="Serra-Cobo">Jordi Serra-Cobo</name><affiliation wicri:level="4"><nlm:affiliation>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Lopez Roig, Marc" sort="Lopez Roig, Marc" uniqKey="Lopez Roig M" first="Marc" last="Lopez Roïg">Marc Lopez Roïg</name><affiliation wicri:level="4"><nlm:affiliation>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Brown, Paul" sort="Brown, Paul" uniqKey="Brown P" first="Paul" last="Brown">Paul Brown</name><affiliation wicri:level="3"><nlm:affiliation>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan</wicri:regionArea><placeName><region type="region" nuts="2">Région Bretagne</region><settlement type="city">Ploufragan</settlement></placeName></affiliation></author><author><name sortKey="Moutou, Francois" sort="Moutou, Francois" uniqKey="Moutou F" first="François" last="Moutou">François Moutou</name><affiliation wicri:level="3"><nlm:affiliation>Ecole Nationale Vétérinaire d'Alfort, 94704, Maison-Alfort, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Ecole Nationale Vétérinaire d'Alfort, 94704, Maison-Alfort</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Maison-Alfort</settlement></placeName></affiliation></author><author><name sortKey="Caro, Valerie" sort="Caro, Valerie" uniqKey="Caro V" first="Valérie" last="Caro">Valérie Caro</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name><affiliation wicri:level="3"><nlm:affiliation>Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen</wicri:regionArea><placeName><region type="region" nuts="2">Région Normandie</region><region type="old region" nuts="2">Basse-Normandie</region><settlement type="city">Caen</settlement></placeName></affiliation></author><author><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author></analytic><series><title level="j">Virology</title><idno type="eISSN">1096-0341</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alphacoronavirus (genetics)</term><term>Alphacoronavirus (isolation & purification)</term><term>Animals</term><term>Betacoronavirus (genetics)</term><term>Betacoronavirus (isolation & purification)</term><term>Chiroptera (virology)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genetic Variation</term><term>Phylogeny</term><term>SARS Virus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chiroptera (virologie)</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Phylogénie</term><term>Variation génétique</term><term>Virus du SRAS (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Phylogénie</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related Betacoronavirus in Rhinolophus ferrumequinum were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.</div></front></TEI><double doi="10.1016/j.virol.2018.01.014"><HAL><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world</title><author><name sortKey="Ar Gouilh, Meriadeg" sort="Ar Gouilh, Meriadeg" uniqKey="Ar Gouilh M" first="Meriadeg" last="Ar Gouilh">Meriadeg Ar Gouilh</name><affiliation wicri:level="1"><hal:affiliation type="laboratory" xml:id="struct-237998" status="VALID"> <idno type="RNSR">201321607J</idno> <orgName>Environnement et Risques infectieux - Environment and Infectious Risks</orgName> <orgName type="acronym">ERI</orgName> <desc> <address> <addrLine>Département Infection et Epidémiologie, 28, rue du Docteur Roux, 75724 Paris Cedex 15</addrLine> <country key="FR"></country> </address> <ref type="url">https://research.pasteur.fr/en/team/environment-and-infectious-risks/</ref> </desc> <listRelation> <relation active="#struct-300027" type="direct"></relation> </listRelation> <tutelles><tutelle active="#struct-300027" type="direct"><org type="institution" xml:id="struct-300027" status="VALID"> <idno type="IdRef">027936643</idno> <idno type="ISNI">0000 0001 2353 6535</idno> <orgName>Institut Pasteur [Paris]</orgName> <date type="start">1887-06-04</date> <desc> <address> <addrLine>25-28, rue du docteur Roux, 75724 Paris cedex 15</addrLine> <country key="FR"></country> </address> <ref type="url">https://www.pasteur.fr</ref> </desc> </org></tutelle></tutelles></hal:affiliation><country>France</country></affiliation></author><author><name sortKey="Puechmaille, Sebastien" sort="Puechmaille, Sebastien" uniqKey="Puechmaille S" first="Sébastien" last="Puechmaille">Sébastien Puechmaille</name><affiliation wicri:level="1"><hal:affiliation type="institution" xml:id="struct-462070" status="VALID"> <orgName>Universität Greifswald - 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xml:lang="en">SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world.</title><author><name sortKey="Ar Gouilh, Meriadeg" sort="Ar Gouilh, Meriadeg" uniqKey="Ar Gouilh M" first="Meriadeg" last="Ar Gouilh">Meriadeg Ar Gouilh</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France; Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen, France. Electronic address: meriadeg.le-gouil@pasteur.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France; Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen</wicri:regionArea><placeName><region type="region" nuts="2">Région Normandie</region><region type="old region" nuts="2">Basse-Normandie</region><settlement type="city">Caen</settlement></placeName></affiliation></author><author><name sortKey="Puechmaille, Sebastien J" sort="Puechmaille, Sebastien J" uniqKey="Puechmaille S" first="Sébastien J" last="Puechmaille">Sébastien J. Puechmaille</name><affiliation wicri:level="3"><nlm:affiliation>Greifswald University, 17489, Greifswald, Germany; University College Dublin, Belfield, Dublin 4, Ireland; Chauves-souris Aveyron, 12310, Vimenet, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Greifswald University, 17489, Greifswald, Germany; University College Dublin, Belfield, Dublin 4, Ireland; Chauves-souris Aveyron, 12310, Vimenet</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Midi-Pyrénées</region><settlement type="city">Vimenet</settlement></placeName></affiliation></author><author><name sortKey="Diancourt, Laure" sort="Diancourt, Laure" uniqKey="Diancourt L" first="Laure" last="Diancourt">Laure Diancourt</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Vandenbogaert, Mathias" sort="Vandenbogaert, Mathias" uniqKey="Vandenbogaert M" first="Mathias" last="Vandenbogaert">Mathias Vandenbogaert</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Serra Cobo, Jordi" sort="Serra Cobo, Jordi" uniqKey="Serra Cobo J" first="Jordi" last="Serra-Cobo">Jordi Serra-Cobo</name><affiliation wicri:level="4"><nlm:affiliation>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Lopez Roig, Marc" sort="Lopez Roig, Marc" uniqKey="Lopez Roig M" first="Marc" last="Lopez Roïg">Marc Lopez Roïg</name><affiliation wicri:level="4"><nlm:affiliation>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Brown, Paul" sort="Brown, Paul" uniqKey="Brown P" first="Paul" last="Brown">Paul Brown</name><affiliation wicri:level="3"><nlm:affiliation>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan</wicri:regionArea><placeName><region type="region" nuts="2">Région Bretagne</region><settlement type="city">Ploufragan</settlement></placeName></affiliation></author><author><name sortKey="Moutou, Francois" sort="Moutou, Francois" uniqKey="Moutou F" first="François" last="Moutou">François Moutou</name><affiliation wicri:level="3"><nlm:affiliation>Ecole Nationale Vétérinaire d'Alfort, 94704, Maison-Alfort, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Ecole Nationale Vétérinaire d'Alfort, 94704, Maison-Alfort</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Maison-Alfort</settlement></placeName></affiliation></author><author><name sortKey="Caro, Valerie" sort="Caro, Valerie" uniqKey="Caro V" first="Valérie" last="Caro">Valérie Caro</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name><affiliation wicri:level="3"><nlm:affiliation>Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen</wicri:regionArea><placeName><region type="region" nuts="2">Région Normandie</region><region type="old region" nuts="2">Basse-Normandie</region><settlement type="city">Caen</settlement></placeName></affiliation></author><author><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name><affiliation wicri:level="3"><nlm:affiliation>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author></analytic><series><title level="j">Virology</title><idno type="eISSN">1096-0341</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alphacoronavirus (genetics)</term><term>Alphacoronavirus (isolation & purification)</term><term>Animals</term><term>Betacoronavirus (genetics)</term><term>Betacoronavirus (isolation & purification)</term><term>Chiroptera (virology)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genetic Variation</term><term>Phylogeny</term><term>SARS Virus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chiroptera (virologie)</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Phylogénie</term><term>Variation génétique</term><term>Virus du SRAS (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Phylogénie</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related Betacoronavirus in Rhinolophus ferrumequinum were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.</div></front></TEI></PubMed></double></record>Pour manipuler ce document sous Unix (Dilib)
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