A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES
Identifieur interne : 000A52 ( Main/Exploration ); précédent : 000A51; suivant : 000A53A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES
Auteurs : Fernando L. Tort [Uruguay] ; Matías Castells [Uruguay] ; Juan Cristina [Uruguay]Source :
- Virus Research [ 0168-1702 ] ; 2020.
Abstract
A comprehensive genome and codon usage analysis of SARS-CoV-2 was performed. SARS-CoV-2 has a distinct genome composition in relation to other βCoV strains. The overall codon usage in SARS-CoV-2 is slightly biased. Most of the highly frequent codons are A- and U-ending codons. Different codon preferences in SARS-CoV-2 genes in relation to human ones were found. These differences are due to codon usage preferences.
Url:
DOI: 10.1016/j.virusres.2020.197976
PubMed: NONE
PubMed Central: 7152894
Affiliations:
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Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES</title>
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<series><title level="j">Virus Research</title>
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<front><div type="abstract" xml:lang="en"><title>Highlights</title>
<p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label>
<p id="par0005">A comprehensive genome and codon usage analysis of SARS-CoV-2 was performed.</p>
</list-item>
<list-item id="lsti0010"><label>•</label>
<p id="par0010">SARS-CoV-2 has a distinct genome composition in relation to other βCoV strains.</p>
</list-item>
<list-item id="lsti0015"><label>•</label>
<p id="par0015">The overall codon usage in SARS-CoV-2 is slightly biased.</p>
</list-item>
<list-item id="lsti0020"><label>•</label>
<p id="par0020">Most of the highly frequent codons are A- and U-ending codons.</p>
</list-item>
<list-item id="lsti0025"><label>•</label>
<p id="par0025">Different codon preferences in SARS-CoV-2 genes in relation to human ones were found.</p>
</list-item>
<list-item id="lsti0030"><label>•</label>
<p id="par0030">These differences are due to codon usage preferences.</p>
</list-item>
</list>
</p>
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