SrasV1, Main, Exploration, bibRecord, 001F33

Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service

Identifieur interne : 001F33 ( Main/Exploration ); précédent : 001F32; suivant : 001F34

Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service

Auteurs : Daniel A. Janies [États-Unis] ; Laura W. Pomeroy [États-Unis] ; Jacob M. Aaronson [États-Unis] ; Samuel Handelman [États-Unis] ; Jori Hardman [États-Unis] ; Kevin Kawalec [États-Unis] ; Thomas Bitterman [États-Unis] ; Ward C. Wheeler [États-Unis]

Source :

Cladistics [ 0748-3007 ] ; 2012-10.

RBID : ISTEX:A5B5D2FC7BE4041EF6B3D42EC2EAC43B033F4CD8

Abstract

We have reported previously on use of a web‐based application, Supramap (http://supramap.org) for the study of biogeographic, genotypic, and phenotypic evolution. Using Supramap we have developed maps of the spread of drug‐resistant influenza and host shifts in H1N1 and H5N1 influenza and coronaviruses such as SARS. Here we report on another zoonotic pathogen, H7 influenza, and provide an update on the implementation of Supramap as a web service. We find that the emergence of pathogenic strains of H7 is labile with many transitions from high to low pathogenicity, and from low to high pathogenicity. We use Supramap to put these events in a temporal and geospatial context. We identify several lineages of H7 influenza with biomarkers of high pathogenicity in regions that have not been reported in the scientific literature. The original implementation of Supramap was built with tightly coupled client and server software. Now we have decoupled the components to provide a modular web service for POY (http://poyws.org) that can be consumed by a data provider to create a novel application. To demonstrate the web service, we have produced an application, Geogenes (http://geogenes.org). Unlike in Supramap, in which the user is required to create and upload data files, in Geogenes the user works from a graphical interface to query an underlying dataset. Geogenes demonstrates how the web service can provide underlying processing for any sequence and metadata database. © The Willi Hennig Society 2012.

Url:

DOI: 10.1111/j.1096-0031.2012.00401.x

Affiliations:

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<front><div type="abstract" xml:lang="en">We have reported previously on use of a web‐based application, Supramap (http://supramap.org) for the study of biogeographic, genotypic, and phenotypic evolution. Using Supramap we have developed maps of the spread of drug‐resistant influenza and host shifts in H1N1 and H5N1 influenza and coronaviruses such as SARS. Here we report on another zoonotic pathogen, H7 influenza, and provide an update on the implementation of Supramap as a web service. We find that the emergence of pathogenic strains of H7 is labile with many transitions from high to low pathogenicity, and from low to high pathogenicity. We use Supramap to put these events in a temporal and geospatial context. We identify several lineages of H7 influenza with biomarkers of high pathogenicity in regions that have not been reported in the scientific literature. The original implementation of Supramap was built with tightly coupled client and server software. Now we have decoupled the components to provide a modular web service for POY (http://poyws.org) that can be consumed by a data provider to create a novel application. To demonstrate the web service, we have produced an application, Geogenes (http://geogenes.org). Unlike in Supramap, in which the user is required to create and upload data files, in Geogenes the user works from a graphical interface to query an underlying dataset. Geogenes demonstrates how the web service can provide underlying processing for any sequence and metadata database. © The Willi Hennig Society 2012.</div>
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Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service

Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service

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