Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Richards model revisited: validation by and application to infection dynamics.

Identifieur interne : 001C69 ( Main/Exploration ); précédent : 001C68; suivant : 001C70

Richards model revisited: validation by and application to infection dynamics.

Auteurs : Xiang-Sheng Wang [Canada] ; Jianhong Wu ; Yong Yang

Source :

RBID : pubmed:22889641

Descripteurs français

English descriptors

Abstract

Ever since Richards proposed his flexible growth function more than half a century ago, it has been a mystery that this empirical function has made many incredible coincidences with real ecological or epidemic data even though one of its parameters (i.e., the exponential term) does not seem to have clear biological meaning. It is therefore a natural challenge to mathematical biologists to provide an explanation of the interesting coincidences and a biological interpretation of the parameter. Here we start from a simple epidemic SIR model to revisit Richards model via an intrinsic relation between both models. Especially, we prove that the exponential term in the Richards model has a one-to-one nonlinear correspondence to the basic reproduction number of the SIR model. This one-to-one relation provides us an explicit formula in calculating the basic reproduction number. Another biological significance of our study is the observation that the peak time is approximately just a serial interval after the turning point. Moreover, we provide an explicit relation between final outbreak size, basic reproduction number and the peak epidemic size which means that we can predict the final outbreak size shortly after the peak time. Finally, we introduce a constraint in Richards model to address over fitting problem observed in the existing studies and then apply our method with constraint to conduct some validation analysis using the data of recent outbreaks of prototype infectious diseases such as Canada 2009 H1N1 outbreak, GTA 2003 SARS outbreak, Singapore 2005 dengue outbreak, and Taiwan 2003 SARS outbreak. Our new formula gives much more stable and precise estimate of model parameters and key epidemic characteristics such as the final outbreak size, the basic reproduction number, and the turning point, compared with earlier simulations without constraints.

DOI: 10.1016/j.jtbi.2012.07.024
PubMed: 22889641


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Richards model revisited: validation by and application to infection dynamics.</title>
<author>
<name sortKey="Wang, Xiang Sheng" sort="Wang, Xiang Sheng" uniqKey="Wang X" first="Xiang-Sheng" last="Wang">Xiang-Sheng Wang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Mprime Centre for Disease Modelling, York Institute for Health Research, York University, Toronto, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Mprime Centre for Disease Modelling, York Institute for Health Research, York University, Toronto</wicri:regionArea>
<wicri:noRegion>Toronto</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Jianhong" sort="Wu, Jianhong" uniqKey="Wu J" first="Jianhong" last="Wu">Jianhong Wu</name>
</author>
<author>
<name sortKey="Yang, Yong" sort="Yang, Yong" uniqKey="Yang Y" first="Yong" last="Yang">Yong Yang</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2012">2012</date>
<idno type="RBID">pubmed:22889641</idno>
<idno type="pmid">22889641</idno>
<idno type="doi">10.1016/j.jtbi.2012.07.024</idno>
<idno type="wicri:Area/PubMed/Corpus">001322</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001322</idno>
<idno type="wicri:Area/PubMed/Curation">001322</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001322</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001300</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001300</idno>
<idno type="wicri:Area/Ncbi/Merge">002549</idno>
<idno type="wicri:Area/Ncbi/Curation">002549</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002549</idno>
<idno type="wicri:Area/Main/Merge">001C84</idno>
<idno type="wicri:Area/Main/Curation">001C69</idno>
<idno type="wicri:Area/Main/Exploration">001C69</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Richards model revisited: validation by and application to infection dynamics.</title>
<author>
<name sortKey="Wang, Xiang Sheng" sort="Wang, Xiang Sheng" uniqKey="Wang X" first="Xiang-Sheng" last="Wang">Xiang-Sheng Wang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Mprime Centre for Disease Modelling, York Institute for Health Research, York University, Toronto, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Mprime Centre for Disease Modelling, York Institute for Health Research, York University, Toronto</wicri:regionArea>
<wicri:noRegion>Toronto</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Jianhong" sort="Wu, Jianhong" uniqKey="Wu J" first="Jianhong" last="Wu">Jianhong Wu</name>
</author>
<author>
<name sortKey="Yang, Yong" sort="Yang, Yong" uniqKey="Yang Y" first="Yong" last="Yang">Yong Yang</name>
</author>
</analytic>
<series>
<title level="j">Journal of theoretical biology</title>
<idno type="eISSN">1095-8541</idno>
<imprint>
<date when="2012" type="published">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Canada (epidemiology)</term>
<term>Communicable Diseases (epidemiology)</term>
<term>Dengue (epidemiology)</term>
<term>Disease Susceptibility</term>
<term>Humans</term>
<term>Influenza A Virus, H1N1 Subtype</term>
<term>Influenza, Human (epidemiology)</term>
<term>Influenza, Human (virology)</term>
<term>Models, Biological</term>
<term>Numerical Analysis, Computer-Assisted</term>
<term>Pandemics</term>
<term>Reproducibility of Results</term>
<term>Severe Acute Respiratory Syndrome (epidemiology)</term>
<term>Severe Acute Respiratory Syndrome (virology)</term>
<term>Singapore (epidemiology)</term>
<term>Taiwan (epidemiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Analyse numérique assistée par ordinateur</term>
<term>Canada (épidémiologie)</term>
<term>Dengue (épidémiologie)</term>
<term>Grippe humaine (virologie)</term>
<term>Grippe humaine (épidémiologie)</term>
<term>Humains</term>
<term>Maladies transmissibles (épidémiologie)</term>
<term>Modèles biologiques</term>
<term>Pandémies</term>
<term>Reproductibilité des résultats</term>
<term>Singapour (épidémiologie)</term>
<term>Sous-type H1N1 du virus de la grippe A</term>
<term>Susceptibilité à une maladie</term>
<term>Syndrome respiratoire aigu sévère (virologie)</term>
<term>Syndrome respiratoire aigu sévère (épidémiologie)</term>
<term>Taïwan (épidémiologie)</term>
</keywords>
<keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en">
<term>Canada</term>
<term>Singapore</term>
<term>Taiwan</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Communicable Diseases</term>
<term>Dengue</term>
<term>Influenza, Human</term>
<term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Grippe humaine</term>
<term>Syndrome respiratoire aigu sévère</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Influenza, Human</term>
<term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Canada</term>
<term>Dengue</term>
<term>Grippe humaine</term>
<term>Maladies transmissibles</term>
<term>Singapour</term>
<term>Syndrome respiratoire aigu sévère</term>
<term>Taïwan</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Disease Susceptibility</term>
<term>Humans</term>
<term>Influenza A Virus, H1N1 Subtype</term>
<term>Models, Biological</term>
<term>Numerical Analysis, Computer-Assisted</term>
<term>Pandemics</term>
<term>Reproducibility of Results</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse numérique assistée par ordinateur</term>
<term>Humains</term>
<term>Modèles biologiques</term>
<term>Pandémies</term>
<term>Reproductibilité des résultats</term>
<term>Sous-type H1N1 du virus de la grippe A</term>
<term>Susceptibilité à une maladie</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr">
<term>Canada</term>
<term>Singapour</term>
<term>Taïwan</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Ever since Richards proposed his flexible growth function more than half a century ago, it has been a mystery that this empirical function has made many incredible coincidences with real ecological or epidemic data even though one of its parameters (i.e., the exponential term) does not seem to have clear biological meaning. It is therefore a natural challenge to mathematical biologists to provide an explanation of the interesting coincidences and a biological interpretation of the parameter. Here we start from a simple epidemic SIR model to revisit Richards model via an intrinsic relation between both models. Especially, we prove that the exponential term in the Richards model has a one-to-one nonlinear correspondence to the basic reproduction number of the SIR model. This one-to-one relation provides us an explicit formula in calculating the basic reproduction number. Another biological significance of our study is the observation that the peak time is approximately just a serial interval after the turning point. Moreover, we provide an explicit relation between final outbreak size, basic reproduction number and the peak epidemic size which means that we can predict the final outbreak size shortly after the peak time. Finally, we introduce a constraint in Richards model to address over fitting problem observed in the existing studies and then apply our method with constraint to conduct some validation analysis using the data of recent outbreaks of prototype infectious diseases such as Canada 2009 H1N1 outbreak, GTA 2003 SARS outbreak, Singapore 2005 dengue outbreak, and Taiwan 2003 SARS outbreak. Our new formula gives much more stable and precise estimate of model parameters and key epidemic characteristics such as the final outbreak size, the basic reproduction number, and the turning point, compared with earlier simulations without constraints.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Canada</li>
</country>
</list>
<tree>
<noCountry>
<name sortKey="Wu, Jianhong" sort="Wu, Jianhong" uniqKey="Wu J" first="Jianhong" last="Wu">Jianhong Wu</name>
<name sortKey="Yang, Yong" sort="Yang, Yong" uniqKey="Yang Y" first="Yong" last="Yang">Yong Yang</name>
</noCountry>
<country name="Canada">
<noRegion>
<name sortKey="Wang, Xiang Sheng" sort="Wang, Xiang Sheng" uniqKey="Wang X" first="Xiang-Sheng" last="Wang">Xiang-Sheng Wang</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001C69 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001C69 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:22889641
   |texte=   Richards model revisited: validation by and application to infection dynamics.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:22889641" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021