Human coronaviruses in severe acute respiratory infection (SARI) cases in southwest India
Identifieur interne : 001138 ( Main/Exploration ); précédent : 001137; suivant : 001139Human coronaviruses in severe acute respiratory infection (SARI) cases in southwest India
Auteurs : Prabhu G. Suresha [Inde] ; Chameettachal Akhil [Inde] ; Aithal Anjali [Inde] ; Dsouza R. Giselle [Inde] ; Bhaskar Revti [Inde] ; Govindakarnavar Arunkumar [Inde, États-Unis]Source :
- Journal of Medical Virology [ 0146-6615 ] ; 2016-01.
Descripteurs français
- KwdFr :
- Adolescent, Adulte, Adulte d'âge moyen, Coronavirus (), Coronavirus (isolement et purification), Enfant, Enfant d'âge préscolaire, Femelle, Humains, Inde (épidémiologie), Infections de l'appareil respiratoire (anatomopathologie), Infections de l'appareil respiratoire (virologie), Infections de l'appareil respiratoire (épidémiologie), Infections à Coronaviridae (anatomopathologie), Infections à Coronaviridae (virologie), Infections à Coronaviridae (épidémiologie), Jeune adulte, Mâle, Nourrisson, Pharynx (virologie), Prévalence, Réaction de polymérisation en chaîne, Études rétrospectives, Études transversales.
- MESH :
- anatomopathologie : Infections de l'appareil respiratoire, Infections à Coronaviridae.
- isolement et purification : Coronavirus.
- virologie : Infections de l'appareil respiratoire, Infections à Coronaviridae, Pharynx.
- épidémiologie : Inde, Infections de l'appareil respiratoire, Infections à Coronaviridae.
- Adolescent, Adulte, Adulte d'âge moyen, Coronavirus, Enfant, Enfant d'âge préscolaire, Femelle, Humains, Jeune adulte, Mâle, Nourrisson, Prévalence, Réaction de polymérisation en chaîne, Études rétrospectives, Études transversales.
- Wicri :
- geographic : Inde.
English descriptors
- KwdEn :
- Adolescent, Adult, Child, Child, Preschool, Coronaviridae Infections (epidemiology), Coronaviridae Infections (pathology), Coronaviridae Infections (virology), Coronavirus (classification), Coronavirus (isolation & purification), Cross-Sectional Studies, Female, Humans, India (epidemiology), Infant, Male, Middle Aged, Pharynx (virology), Polymerase Chain Reaction, Prevalence, Respiratory Tract Infections (epidemiology), Respiratory Tract Infections (pathology), Respiratory Tract Infections (virology), Retrospective Studies, Young Adult.
- MESH :
- geographic , epidemiology : India.
- classification : Coronavirus.
- epidemiology : Coronaviridae Infections, Respiratory Tract Infections.
- isolation & purification : Coronavirus.
- pathology : Coronaviridae Infections, Respiratory Tract Infections.
- virology : Coronaviridae Infections, Pharynx, Respiratory Tract Infections.
- Adolescent, Adult, Child, Child, Preschool, Cross-Sectional Studies, Female, Humans, Infant, Male, Middle Aged, Polymerase Chain Reaction, Prevalence, Retrospective Studies, Young Adult.
Abstract
Acute viral respiratory infections (AVRI) are a leading cause of morbidity and mortality among all age groups globally. Except for Influenza virus and Respiratory Syncytial virus, mostly viral aetiology of AVRI remains undiagnosed. Lately, human coronaviruses (HCoVs) have emerged as an important aetiology of AVRI. A laboratory based retrospective cross sectional study was conducted in which respiratory samples (throat swabs) of patients (n = 864), with Influenza negative SARI, of all age groups between Jan 2011–Dec 2012 were tested for HCoVs including MERS‐CoV using Conventional and real time PCR assays. The prevalence of HCoV among SARI cases was 1.04% (9/864) [95% CI: 0.36–1.72]. Of these four (44.44%) were identified as HCoV OC43, three (33.33%) as HCoV NL63 and two (22.22%) as HCoV 229E. No HCoV HKU1 was detected. The samples were also negative for SARS‐CoV and MERS‐CoV. The results of this study documents low prevalence of human coronaviruses in SARI cases in south western India and the absence of highly pathogenic human coronaviruses. As the study included only SARI cases the prevalence reported could be an under estimate when it is extrapolated to community. J. Med. Virol. 88:163–165, 2016. © 2015 Wiley Periodicals, Inc.
Url:
DOI: 10.1002/jmv.24296
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 000285
- to stream Istex, to step Curation: 000285
- to stream Istex, to step Checkpoint: 000044
- to stream PubMed, to step Corpus: 000D48
- to stream PubMed, to step Curation: 000D48
- to stream PubMed, to step Checkpoint: 000C43
- to stream Ncbi, to step Merge: 002B52
- to stream Ncbi, to step Curation: 002B52
- to stream Ncbi, to step Checkpoint: 002B52
- to stream Main, to step Merge: 001140
- to stream Main, to step Curation: 001138
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Human coronaviruses in severe acute respiratory infection (SARI) cases in southwest India</title>
<author><name sortKey="Suresha, Prabhu G" sort="Suresha, Prabhu G" uniqKey="Suresha P" first="Prabhu G." last="Suresha">Prabhu G. Suresha</name>
</author>
<author><name sortKey="Akhil, Chameettachal" sort="Akhil, Chameettachal" uniqKey="Akhil C" first="Chameettachal" last="Akhil">Chameettachal Akhil</name>
</author>
<author><name sortKey="Anjali, Aithal" sort="Anjali, Aithal" uniqKey="Anjali A" first="Aithal" last="Anjali">Aithal Anjali</name>
</author>
<author><name sortKey="Giselle, Dsouza R" sort="Giselle, Dsouza R" uniqKey="Giselle D" first="Dsouza R." last="Giselle">Dsouza R. Giselle</name>
</author>
<author><name sortKey="Revti, Bhaskar" sort="Revti, Bhaskar" uniqKey="Revti B" first="Bhaskar" last="Revti">Bhaskar Revti</name>
</author>
<author><name sortKey="Arunkumar, Govindakarnavar" sort="Arunkumar, Govindakarnavar" uniqKey="Arunkumar G" first="Govindakarnavar" last="Arunkumar">Govindakarnavar Arunkumar</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:544011ACE3F13DA7B4F8F09740FB044647B65FD8</idno>
<date when="2016" year="2016">2016</date>
<idno type="doi">10.1002/jmv.24296</idno>
<idno type="url">https://api.istex.fr/ark:/67375/WNG-Q51TJK85-P/fulltext.pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000285</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000285</idno>
<idno type="wicri:Area/Istex/Curation">000285</idno>
<idno type="wicri:Area/Istex/Checkpoint">000044</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000044</idno>
<idno type="wicri:doubleKey">0146-6615:2016:Suresha P:human:coronaviruses:in</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:26512711</idno>
<idno type="wicri:Area/PubMed/Corpus">000D48</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000D48</idno>
<idno type="wicri:Area/PubMed/Curation">000D48</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000D48</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000C43</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000C43</idno>
<idno type="wicri:Area/Ncbi/Merge">002B52</idno>
<idno type="wicri:Area/Ncbi/Curation">002B52</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002B52</idno>
<idno type="wicri:Area/Main/Merge">001140</idno>
<idno type="wicri:Area/Main/Curation">001138</idno>
<idno type="wicri:Area/Main/Exploration">001138</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main">Human coronaviruses in severe acute respiratory infection (SARI) cases in southwest India</title>
<author><name sortKey="Suresha, Prabhu G" sort="Suresha, Prabhu G" uniqKey="Suresha P" first="Prabhu G." last="Suresha">Prabhu G. Suresha</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Akhil, Chameettachal" sort="Akhil, Chameettachal" uniqKey="Akhil C" first="Chameettachal" last="Akhil">Chameettachal Akhil</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Anjali, Aithal" sort="Anjali, Aithal" uniqKey="Anjali A" first="Aithal" last="Anjali">Aithal Anjali</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Giselle, Dsouza R" sort="Giselle, Dsouza R" uniqKey="Giselle D" first="Dsouza R." last="Giselle">Dsouza R. Giselle</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Revti, Bhaskar" sort="Revti, Bhaskar" uniqKey="Revti B" first="Bhaskar" last="Revti">Bhaskar Revti</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Arunkumar, Govindakarnavar" sort="Arunkumar, Govindakarnavar" uniqKey="Arunkumar G" first="Govindakarnavar" last="Arunkumar">Govindakarnavar Arunkumar</name>
<affiliation wicri:level="1"><country xml:lang="fr">Inde</country>
<wicri:regionArea>Manipal Centre for Virus Research, Manipal University, Manipal, Karnataka</wicri:regionArea>
<wicri:noRegion>Karnataka</wicri:noRegion>
</affiliation>
<affiliation></affiliation>
<affiliation wicri:level="1"><country wicri:rule="url">États-Unis</country>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j" type="main">Journal of Medical Virology</title>
<title level="j" type="alt">JOURNAL OF MEDICAL VIROLOGY</title>
<idno type="ISSN">0146-6615</idno>
<idno type="eISSN">1096-9071</idno>
<imprint><biblScope unit="vol">88</biblScope>
<biblScope unit="issue">1</biblScope>
<biblScope unit="page" from="163">163</biblScope>
<biblScope unit="page" to="165">165</biblScope>
<biblScope unit="page-count">3</biblScope>
<date type="published" when="2016-01">2016-01</date>
</imprint>
<idno type="ISSN">0146-6615</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0146-6615</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term>
<term>Adult</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Coronaviridae Infections (epidemiology)</term>
<term>Coronaviridae Infections (pathology)</term>
<term>Coronaviridae Infections (virology)</term>
<term>Coronavirus (classification)</term>
<term>Coronavirus (isolation & purification)</term>
<term>Cross-Sectional Studies</term>
<term>Female</term>
<term>Humans</term>
<term>India (epidemiology)</term>
<term>Infant</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Pharynx (virology)</term>
<term>Polymerase Chain Reaction</term>
<term>Prevalence</term>
<term>Respiratory Tract Infections (epidemiology)</term>
<term>Respiratory Tract Infections (pathology)</term>
<term>Respiratory Tract Infections (virology)</term>
<term>Retrospective Studies</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Coronavirus ()</term>
<term>Coronavirus (isolement et purification)</term>
<term>Enfant</term>
<term>Enfant d'âge préscolaire</term>
<term>Femelle</term>
<term>Humains</term>
<term>Inde (épidémiologie)</term>
<term>Infections de l'appareil respiratoire (anatomopathologie)</term>
<term>Infections de l'appareil respiratoire (virologie)</term>
<term>Infections de l'appareil respiratoire (épidémiologie)</term>
<term>Infections à Coronaviridae (anatomopathologie)</term>
<term>Infections à Coronaviridae (virologie)</term>
<term>Infections à Coronaviridae (épidémiologie)</term>
<term>Jeune adulte</term>
<term>Mâle</term>
<term>Nourrisson</term>
<term>Pharynx (virologie)</term>
<term>Prévalence</term>
<term>Réaction de polymérisation en chaîne</term>
<term>Études rétrospectives</term>
<term>Études transversales</term>
</keywords>
<keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>India</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomopathologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term>
<term>Infections à Coronaviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Coronaviridae Infections</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="pathology" xml:lang="en"><term>Coronaviridae Infections</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term>
<term>Infections à Coronaviridae</term>
<term>Pharynx</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronaviridae Infections</term>
<term>Pharynx</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Inde</term>
<term>Infections de l'appareil respiratoire</term>
<term>Infections à Coronaviridae</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Adolescent</term>
<term>Adult</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Cross-Sectional Studies</term>
<term>Female</term>
<term>Humans</term>
<term>Infant</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Polymerase Chain Reaction</term>
<term>Prevalence</term>
<term>Retrospective Studies</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Coronavirus</term>
<term>Enfant</term>
<term>Enfant d'âge préscolaire</term>
<term>Femelle</term>
<term>Humains</term>
<term>Jeune adulte</term>
<term>Mâle</term>
<term>Nourrisson</term>
<term>Prévalence</term>
<term>Réaction de polymérisation en chaîne</term>
<term>Études rétrospectives</term>
<term>Études transversales</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Inde</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Acute viral respiratory infections (AVRI) are a leading cause of morbidity and mortality among all age groups globally. Except for Influenza virus and Respiratory Syncytial virus, mostly viral aetiology of AVRI remains undiagnosed. Lately, human coronaviruses (HCoVs) have emerged as an important aetiology of AVRI. A laboratory based retrospective cross sectional study was conducted in which respiratory samples (throat swabs) of patients (n = 864), with Influenza negative SARI, of all age groups between Jan 2011–Dec 2012 were tested for HCoVs including MERS‐CoV using Conventional and real time PCR assays. The prevalence of HCoV among SARI cases was 1.04% (9/864) [95% CI: 0.36–1.72]. Of these four (44.44%) were identified as HCoV OC43, three (33.33%) as HCoV NL63 and two (22.22%) as HCoV 229E. No HCoV HKU1 was detected. The samples were also negative for SARS‐CoV and MERS‐CoV. The results of this study documents low prevalence of human coronaviruses in SARI cases in south western India and the absence of highly pathogenic human coronaviruses. As the study included only SARI cases the prevalence reported could be an under estimate when it is extrapolated to community. J. Med. Virol. 88:163–165, 2016. © 2015 Wiley Periodicals, Inc.</div>
</front>
</TEI>
<affiliations><list><country><li>Inde</li>
<li>États-Unis</li>
</country>
</list>
<tree><country name="Inde"><noRegion><name sortKey="Suresha, Prabhu G" sort="Suresha, Prabhu G" uniqKey="Suresha P" first="Prabhu G." last="Suresha">Prabhu G. Suresha</name>
</noRegion>
<name sortKey="Akhil, Chameettachal" sort="Akhil, Chameettachal" uniqKey="Akhil C" first="Chameettachal" last="Akhil">Chameettachal Akhil</name>
<name sortKey="Anjali, Aithal" sort="Anjali, Aithal" uniqKey="Anjali A" first="Aithal" last="Anjali">Aithal Anjali</name>
<name sortKey="Arunkumar, Govindakarnavar" sort="Arunkumar, Govindakarnavar" uniqKey="Arunkumar G" first="Govindakarnavar" last="Arunkumar">Govindakarnavar Arunkumar</name>
<name sortKey="Giselle, Dsouza R" sort="Giselle, Dsouza R" uniqKey="Giselle D" first="Dsouza R." last="Giselle">Dsouza R. Giselle</name>
<name sortKey="Revti, Bhaskar" sort="Revti, Bhaskar" uniqKey="Revti B" first="Bhaskar" last="Revti">Bhaskar Revti</name>
</country>
<country name="États-Unis"><noRegion><name sortKey="Arunkumar, Govindakarnavar" sort="Arunkumar, Govindakarnavar" uniqKey="Arunkumar G" first="Govindakarnavar" last="Arunkumar">Govindakarnavar Arunkumar</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001138 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001138 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= Main |étape= Exploration |type= RBID |clé= ISTEX:544011ACE3F13DA7B4F8F09740FB044647B65FD8 |texte= Human coronaviruses in severe acute respiratory infection (SARI) cases in southwest India }}
This area was generated with Dilib version V0.6.33. |