Surveillance of Severe Acute Respiratory Infection (SARI) for Hospitalized Patients in Northern Vietnam, 2011-2014.
Identifieur interne : 000D61 ( Main/Exploration ); précédent : 000D60; suivant : 000D62Surveillance of Severe Acute Respiratory Infection (SARI) for Hospitalized Patients in Northern Vietnam, 2011-2014.
Auteurs : Hang Khanh Le Nguyen ; Son Vu Nguyen ; Anh Phuong Nguyen ; Phuong Mai Vu Hoang ; Thanh Thi Le ; Thach Co Nguyen ; Huong Thu Hoang ; Cuong Duc Vuong ; Loan Thi Thanh Tran ; Mai Quynh LeSource :
- Japanese journal of infectious diseases [ 1884-2836 ] ; 2017.
Descripteurs français
- KwdFr :
- Adolescent, Adulte, Adulte d'âge moyen, Enfant, Enfant d'âge préscolaire, Femelle, Hospitalisation, Humains, Infections de l'appareil respiratoire (virologie), Infections de l'appareil respiratoire (épidémiologie), Jeune adulte, Maladies virales (virologie), Maladies virales (épidémiologie), Mâle, Nourrisson, Pharynx (virologie), Prévalence, RT-PCR, Réaction de polymérisation en chaine en temps réel, Sujet âgé, Sujet âgé de 80 ans ou plus, Trachée (virologie), Vietnam (épidémiologie), Virus (), Virus (isolement et purification), Épidémiosurveillance.
- MESH :
- isolement et purification : Virus.
- virologie : Infections de l'appareil respiratoire, Maladies virales, Pharynx, Trachée.
- épidémiologie : Infections de l'appareil respiratoire, Maladies virales, Vietnam.
- Adolescent, Adulte, Adulte d'âge moyen, Enfant, Enfant d'âge préscolaire, Femelle, Hospitalisation, Humains, Jeune adulte, Mâle, Nourrisson, Prévalence, RT-PCR, Réaction de polymérisation en chaine en temps réel, Sujet âgé, Sujet âgé de 80 ans ou plus, Virus, Épidémiosurveillance.
English descriptors
- KwdEn :
- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Epidemiological Monitoring, Female, Hospitalization, Humans, Infant, Male, Middle Aged, Pharynx (virology), Prevalence, Real-Time Polymerase Chain Reaction, Respiratory Tract Infections (epidemiology), Respiratory Tract Infections (virology), Reverse Transcriptase Polymerase Chain Reaction, Trachea (virology), Vietnam (epidemiology), Virus Diseases (epidemiology), Virus Diseases (virology), Viruses (classification), Viruses (isolation & purification), Young Adult.
- MESH :
- classification : Viruses.
- epidemiology : Respiratory Tract Infections, Vietnam, Virus Diseases.
- isolation & purification : Viruses.
- virology : Pharynx, Respiratory Tract Infections, Trachea, Virus Diseases.
- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Epidemiological Monitoring, Female, Hospitalization, Humans, Infant, Male, Middle Aged, Prevalence, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Young Adult.
Abstract
Severe acute respiratory infections (SARI) are leading causes of hospitalization, morbidity, and mortality in children worldwide. The aim of this study was to identify viral pathogens responsible for SARI in northern Vietnam in the period from 2011 to 2014. Throat swabs and tracheal aspirates were collected from SARI patients according to WHO guidelines. The presence of 13 different viral pathogens (influenza A[H1N1]pdm09; A/H3N2; A/H5; A/H7 and B; para influenza 1,2,3; RSV; HMPV; adeno; severe acute respiratory syndrome-CoV and rhino) was tested by conventional/real-time reverse transcription-polymerase chain reaction. During the study period, 975 samples were collected and tested. More than 30% (32.1%, 313 samples) of the samples showed evidence of infection with influenza viruses, including A/H3N2 (48 samples), A (H1N1) pdm09 (221 samples), influenza B (42 samples), and co-infection of A (H1N1) pdm09 or A/H3N2 and influenza B (2 samples). Other respiratory pathogens were detected in 101 samples, including rhinovirus (73 samples), adenovirus (10 samples), hMPV (9 samples), parainfluenza 3 (5 samples), parainfluenza 2 (3 samples), and RSV (1 sample). Influenza A/H5, A/H7, or SARS-CoV were not detected. Respiratory viral infection, particularly infection of influenza and rhinoviruses, were associated with high rates of SARI hospitalization, and future studies correlating the clinical aspects are needed to design interventions, including targeted vaccination.
DOI: 10.7883/yoken.JJID.2016.463
PubMed: 28367882
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000B43
- to stream PubMed, to step Curation: 000B43
- to stream PubMed, to step Checkpoint: 000A63
- to stream Ncbi, to step Merge: 002D80
- to stream Ncbi, to step Curation: 002D80
- to stream Ncbi, to step Checkpoint: 002D80
- to stream Main, to step Merge: 000D63
- to stream Main, to step Curation: 000D61
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Surveillance of Severe Acute Respiratory Infection (SARI) for Hospitalized Patients in Northern Vietnam, 2011-2014.</title><author><name sortKey="Nguyen, Hang Khanh Le" sort="Nguyen, Hang Khanh Le" uniqKey="Nguyen H" first="Hang Khanh Le" last="Nguyen">Hang Khanh Le Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Son Vu" sort="Nguyen, Son Vu" uniqKey="Nguyen S" first="Son Vu" last="Nguyen">Son Vu Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Anh Phuong" sort="Nguyen, Anh Phuong" uniqKey="Nguyen A" first="Anh Phuong" last="Nguyen">Anh Phuong Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Hoang, Phuong Mai Vu" sort="Hoang, Phuong Mai Vu" uniqKey="Hoang P" first="Phuong Mai Vu" last="Hoang">Phuong Mai Vu Hoang</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Le, Thanh Thi" sort="Le, Thanh Thi" uniqKey="Le T" first="Thanh Thi" last="Le">Thanh Thi Le</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Thach Co" sort="Nguyen, Thach Co" uniqKey="Nguyen T" first="Thach Co" last="Nguyen">Thach Co Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Hoang, Huong Thu" sort="Hoang, Huong Thu" uniqKey="Hoang H" first="Huong Thu" last="Hoang">Huong Thu Hoang</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Vuong, Cuong Duc" sort="Vuong, Cuong Duc" uniqKey="Vuong C" first="Cuong Duc" last="Vuong">Cuong Duc Vuong</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Tran, Loan Thi Thanh" sort="Tran, Loan Thi Thanh" uniqKey="Tran L" first="Loan Thi Thanh" last="Tran">Loan Thi Thanh Tran</name><affiliation><nlm:affiliation>National Traditional Medicine Hospital.</nlm:affiliation><wicri:noCountry code="no comma">National Traditional Medicine Hospital.</wicri:noCountry></affiliation></author><author><name sortKey="Le, Mai Quynh" sort="Le, Mai Quynh" uniqKey="Le M" first="Mai Quynh" last="Le">Mai Quynh Le</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28367882</idno><idno type="pmid">28367882</idno><idno type="doi">10.7883/yoken.JJID.2016.463</idno><idno type="wicri:Area/PubMed/Corpus">000B43</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000B43</idno><idno type="wicri:Area/PubMed/Curation">000B43</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000B43</idno><idno type="wicri:Area/PubMed/Checkpoint">000A63</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000A63</idno><idno type="wicri:Area/Ncbi/Merge">002D80</idno><idno type="wicri:Area/Ncbi/Curation">002D80</idno><idno type="wicri:Area/Ncbi/Checkpoint">002D80</idno><idno type="wicri:Area/Main/Merge">000D63</idno><idno type="wicri:Area/Main/Curation">000D61</idno><idno type="wicri:Area/Main/Exploration">000D61</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Surveillance of Severe Acute Respiratory Infection (SARI) for Hospitalized Patients in Northern Vietnam, 2011-2014.</title><author><name sortKey="Nguyen, Hang Khanh Le" sort="Nguyen, Hang Khanh Le" uniqKey="Nguyen H" first="Hang Khanh Le" last="Nguyen">Hang Khanh Le Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Son Vu" sort="Nguyen, Son Vu" uniqKey="Nguyen S" first="Son Vu" last="Nguyen">Son Vu Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Anh Phuong" sort="Nguyen, Anh Phuong" uniqKey="Nguyen A" first="Anh Phuong" last="Nguyen">Anh Phuong Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Hoang, Phuong Mai Vu" sort="Hoang, Phuong Mai Vu" uniqKey="Hoang P" first="Phuong Mai Vu" last="Hoang">Phuong Mai Vu Hoang</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Le, Thanh Thi" sort="Le, Thanh Thi" uniqKey="Le T" first="Thanh Thi" last="Le">Thanh Thi Le</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Nguyen, Thach Co" sort="Nguyen, Thach Co" uniqKey="Nguyen T" first="Thach Co" last="Nguyen">Thach Co Nguyen</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Hoang, Huong Thu" sort="Hoang, Huong Thu" uniqKey="Hoang H" first="Huong Thu" last="Hoang">Huong Thu Hoang</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Vuong, Cuong Duc" sort="Vuong, Cuong Duc" uniqKey="Vuong C" first="Cuong Duc" last="Vuong">Cuong Duc Vuong</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author><author><name sortKey="Tran, Loan Thi Thanh" sort="Tran, Loan Thi Thanh" uniqKey="Tran L" first="Loan Thi Thanh" last="Tran">Loan Thi Thanh Tran</name><affiliation><nlm:affiliation>National Traditional Medicine Hospital.</nlm:affiliation><wicri:noCountry code="no comma">National Traditional Medicine Hospital.</wicri:noCountry></affiliation></author><author><name sortKey="Le, Mai Quynh" sort="Le, Mai Quynh" uniqKey="Le M" first="Mai Quynh" last="Le">Mai Quynh Le</name><affiliation><nlm:affiliation>Virology Department, National Institute of Hygiene and Epidemiology.</nlm:affiliation><wicri:noCountry code="subField">National Institute of Hygiene and Epidemiology</wicri:noCountry></affiliation></author></analytic><series><title level="j">Japanese journal of infectious diseases</title><idno type="eISSN">1884-2836</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Aged, 80 and over</term><term>Child</term><term>Child, Preschool</term><term>Epidemiological Monitoring</term><term>Female</term><term>Hospitalization</term><term>Humans</term><term>Infant</term><term>Male</term><term>Middle Aged</term><term>Pharynx (virology)</term><term>Prevalence</term><term>Real-Time Polymerase Chain Reaction</term><term>Respiratory Tract Infections (epidemiology)</term><term>Respiratory Tract Infections (virology)</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Trachea (virology)</term><term>Vietnam (epidemiology)</term><term>Virus Diseases (epidemiology)</term><term>Virus Diseases (virology)</term><term>Viruses (classification)</term><term>Viruses (isolation & purification)</term><term>Young Adult</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Adolescent</term><term>Adulte</term><term>Adulte d'âge moyen</term><term>Enfant</term><term>Enfant d'âge préscolaire</term><term>Femelle</term><term>Hospitalisation</term><term>Humains</term><term>Infections de l'appareil respiratoire (virologie)</term><term>Infections de l'appareil respiratoire (épidémiologie)</term><term>Jeune adulte</term><term>Maladies virales (virologie)</term><term>Maladies virales (épidémiologie)</term><term>Mâle</term><term>Nourrisson</term><term>Pharynx (virologie)</term><term>Prévalence</term><term>RT-PCR</term><term>Réaction de polymérisation en chaine en temps réel</term><term>Sujet âgé</term><term>Sujet âgé de 80 ans ou plus</term><term>Trachée (virologie)</term><term>Vietnam (épidémiologie)</term><term>Virus ()</term><term>Virus (isolement et purification)</term><term>Épidémiosurveillance</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Respiratory Tract Infections</term><term>Vietnam</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term><term>Maladies virales</term><term>Pharynx</term><term>Trachée</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Pharynx</term><term>Respiratory Tract Infections</term><term>Trachea</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term><term>Maladies virales</term><term>Vietnam</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Aged, 80 and over</term><term>Child</term><term>Child, Preschool</term><term>Epidemiological Monitoring</term><term>Female</term><term>Hospitalization</term><term>Humans</term><term>Infant</term><term>Male</term><term>Middle Aged</term><term>Prevalence</term><term>Real-Time Polymerase Chain Reaction</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Young Adult</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Adolescent</term><term>Adulte</term><term>Adulte d'âge moyen</term><term>Enfant</term><term>Enfant d'âge préscolaire</term><term>Femelle</term><term>Hospitalisation</term><term>Humains</term><term>Jeune adulte</term><term>Mâle</term><term>Nourrisson</term><term>Prévalence</term><term>RT-PCR</term><term>Réaction de polymérisation en chaine en temps réel</term><term>Sujet âgé</term><term>Sujet âgé de 80 ans ou plus</term><term>Virus</term><term>Épidémiosurveillance</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Severe acute respiratory infections (SARI) are leading causes of hospitalization, morbidity, and mortality in children worldwide. The aim of this study was to identify viral pathogens responsible for SARI in northern Vietnam in the period from 2011 to 2014. Throat swabs and tracheal aspirates were collected from SARI patients according to WHO guidelines. The presence of 13 different viral pathogens (influenza A[H1N1]pdm09; A/H3N2; A/H5; A/H7 and B; para influenza 1,2,3; RSV; HMPV; adeno; severe acute respiratory syndrome-CoV and rhino) was tested by conventional/real-time reverse transcription-polymerase chain reaction. During the study period, 975 samples were collected and tested. More than 30% (32.1%, 313 samples) of the samples showed evidence of infection with influenza viruses, including A/H3N2 (48 samples), A (H1N1) pdm09 (221 samples), influenza B (42 samples), and co-infection of A (H1N1) pdm09 or A/H3N2 and influenza B (2 samples). Other respiratory pathogens were detected in 101 samples, including rhinovirus (73 samples), adenovirus (10 samples), hMPV (9 samples), parainfluenza 3 (5 samples), parainfluenza 2 (3 samples), and RSV (1 sample). Influenza A/H5, A/H7, or SARS-CoV were not detected. Respiratory viral infection, particularly infection of influenza and rhinoviruses, were associated with high rates of SARI hospitalization, and future studies correlating the clinical aspects are needed to design interventions, including targeted vaccination.</div></front></TEI><affiliations><list></list><tree><noCountry><name sortKey="Hoang, Huong Thu" sort="Hoang, Huong Thu" uniqKey="Hoang H" first="Huong Thu" last="Hoang">Huong Thu Hoang</name><name sortKey="Hoang, Phuong Mai Vu" sort="Hoang, Phuong Mai Vu" uniqKey="Hoang P" first="Phuong Mai Vu" last="Hoang">Phuong Mai Vu Hoang</name><name sortKey="Le, Mai Quynh" sort="Le, Mai Quynh" uniqKey="Le M" first="Mai Quynh" last="Le">Mai Quynh Le</name><name sortKey="Le, Thanh Thi" sort="Le, Thanh Thi" uniqKey="Le T" first="Thanh Thi" last="Le">Thanh Thi Le</name><name sortKey="Nguyen, Anh Phuong" sort="Nguyen, Anh Phuong" uniqKey="Nguyen A" first="Anh Phuong" last="Nguyen">Anh Phuong Nguyen</name><name sortKey="Nguyen, Hang Khanh Le" sort="Nguyen, Hang Khanh Le" uniqKey="Nguyen H" first="Hang Khanh Le" last="Nguyen">Hang Khanh Le Nguyen</name><name sortKey="Nguyen, Son Vu" sort="Nguyen, Son Vu" uniqKey="Nguyen S" first="Son Vu" last="Nguyen">Son Vu Nguyen</name><name sortKey="Nguyen, Thach Co" sort="Nguyen, Thach Co" uniqKey="Nguyen T" first="Thach Co" last="Nguyen">Thach Co Nguyen</name><name sortKey="Tran, Loan Thi Thanh" sort="Tran, Loan Thi Thanh" uniqKey="Tran L" first="Loan Thi Thanh" last="Tran">Loan Thi Thanh Tran</name><name sortKey="Vuong, Cuong Duc" sort="Vuong, Cuong Duc" uniqKey="Vuong C" first="Cuong Duc" last="Vuong">Cuong Duc Vuong</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000D61 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000D61 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28367882
|texte= Surveillance of Severe Acute Respiratory Infection (SARI) for Hospitalized Patients in Northern Vietnam, 2011-2014.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28367882" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a SrasV1
| This area was generated with Dilib version V0.6.33. |  |