Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)
Identifieur interne : 000E30 ( Istex/Corpus ); précédent : 000E29; suivant : 000E31Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)
Auteurs : M. Patou ; J. Chen ; L. Cosson ; D. H. Andersen ; C. Cruaud ; A. Couloux ; E. Randi ; S. Zhang ; G. VeronSource :
- Journal of Zoology [ 0952-8369 ] ; 2009-07.
English descriptors
- Teeft :
- Allele, Allele frequency data, Bayesian inference, Body colour, Body length, Carnivora, China forestry publishing house, Chinese academy, Chinese civets, Chinese group, Chinese haplogroups, Chinese individuals, Chinese populations, Civet, Civet populations, Control region, Corbet hill, Cytb, Departement systematique, Different civet populations, Different populations, Exact tests, Farm populations, Field field, Genetic, Genetic differentiation, Genetic distance, Genetic distances, Genetic divergence, Genetic diversity, Genetic exchange, Genetic signature, Genetic variability, Genetics, Geographic origin, Guangxi, Haplotype, Haplotype network, High number, Hong kong, Hubei, Hubei province, Indochinese, Indochinese region, Journal compilation, Larvata, Locus, London patou, Malaysia, Mammal, Mammal species, Market animals, Market civets, Maximal values, Microsatellite, Mismatch distribution, Mitochondrial, Mitochondrial genes, Mitochondrial phylogeography, Molecular evolution, Molecular results, Molecular variance, Multiple tests, Museum specimens, Mutation model, National taiwan university, Natural history, Nite population, Northern laos, Nucleotidic diversity, Paguma, Paguma larvata, Pairwise, Pairwise differences, Palm civet, Palm civet paguma larvata, Palm civet paguma larvata patou, Palm civet populations, Palm civets, Paris cedex, Patou, Phylogenetic, Phylogenetic tree, Phylogenetic trees, Phylogeographic, Phylogeographic pattern, Polymorphic microsatellite markers, Population history, Population structure, Present status, Program fstat, Root haplotype, Sars coronavirus, Shanxi, Shanxi farm guangxi farm, Shanxi farm population, Sichuan, Sichuan farm hubei farm hubei, Sichuan farm populations, Sichuan province, Sudden population expansion, Sundaic, Sundaic individuals, Sundaic region, Unknown origin, Variability, Veron, Vietnam, Vietnamese samples, Viverridae, White head pattern, Wild civet populations, Wild civets, Wild individuals, Wild population, Wild populations, Wildlife trade, Xihua university museum, Zhang, Zoological, Zoological society, Zoology.
Abstract
The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.
Url:
DOI: 10.1111/j.1469-7998.2009.00570.x
Links to Exploration step
ISTEX:A9EE977FF61AACC63C46F3CE219BAEBB70CAB2AELe document en format XML
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Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</div></front></TEI><istex><corpusName>wiley</corpusName><keywords><teeft><json:string>civet</json:string><json:string>larvata</json:string><json:string>hubei</json:string><json:string>sichuan</json:string><json:string>paguma</json:string><json:string>haplotype</json:string><json:string>genetic diversity</json:string><json:string>patou</json:string><json:string>allele</json:string><json:string>shanxi</json:string><json:string>mitochondrial</json:string><json:string>guangxi</json:string><json:string>palm civet</json:string><json:string>zoological</json:string><json:string>sundaic</json:string><json:string>journal compilation</json:string><json:string>zoological 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Patou</name><affiliations><json:string>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</json:string></affiliations></json:item><json:item><name>J. Chen</name><affiliations><json:string>South China Institute of Endangered Animals, Guangdong Academy of Sciences, Guangzhou 510260, P.R. China</json:string></affiliations></json:item><json:item><name>L. Cosson</name><affiliations><json:string>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</json:string></affiliations></json:item><json:item><name>D. H. Andersen</name><affiliations><json:string>ISPRA Istituto Nazionale per la Fauna Selvatica, Ozzano dell′Emilia, BO, Italy</json:string></affiliations></json:item><json:item><name>C. Cruaud</name><affiliations><json:string>Genoscope, Centre National de Séquençage, Evry Cedex, France</json:string></affiliations></json:item><json:item><name>A. Couloux</name><affiliations><json:string>Genoscope, Centre National de Séquençage, Evry Cedex, France</json:string></affiliations></json:item><json:item><name>E. Randi</name><affiliations><json:string>ISPRA Istituto Nazionale per la Fauna Selvatica, Ozzano dell′Emilia, BO, Italy</json:string></affiliations></json:item><json:item><name>S. Zhang</name><affiliations><json:string>School of Life Science, East China Normal University, Shanghai, China</json:string></affiliations></json:item><json:item><name>G. Veron</name><affiliations><json:string>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</json:string></affiliations></json:item></author><subject><json:item><lang><json:string>eng</json:string></lang><value>Viverridae</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>Paguma larvata</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>phylogeography</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>mitochondrial genes</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>microsatellites</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>SARS</value></json:item></subject><articleId><json:string>JZO570</json:string></articleId><arkIstex>ark:/67375/WNG-6R6BDBPS-C</arkIstex><language><json:string>eng</json:string></language><originalGenre><json:string>article</json:string></originalGenre><abstract>The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</abstract><qualityIndicators><score>9.748</score><pdfWordCount>6833</pdfWordCount><pdfCharCount>46488</pdfCharCount><pdfVersion>1.3</pdfVersion><pdfPageCount>13</pdfPageCount><pdfPageSize>595.276 x 782.362 pts</pdfPageSize><pdfWordsPerPage>526</pdfWordsPerPage><pdfText>true</pdfText><refBibsNative>true</refBibsNative><abstractWordCount>229</abstractWordCount><abstractCharCount>1503</abstractCharCount><keywordCount>6</keywordCount></qualityIndicators><title>Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)</title><genre><json:string>article</json:string></genre><host><title>Journal of 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<ref target="http://www.tei-c.org/">We use TEI</ref></desc></application></appInfo></encodingDesc><profileDesc><abstract xml:lang="en" style="main"><head>Abstract</head><p>The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet <hi rend="italic">Paguma larvata</hi>. First, two portions of mitochondrial genes, cytochrome <hi rend="italic">b</hi> and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</p></abstract><textClass><keywords xml:lang="en"><term xml:id="k1">Viverridae</term><term xml:id="k2"><hi rend="italic">Paguma larvata</hi></term><term xml:id="k3">phylogeography</term><term xml:id="k4">mitochondrial genes</term><term xml:id="k5">microsatellites</term><term xml:id="k6">SARS</term></keywords><keywords rend="tocHeading1"><term>ORIGINAL ARTICLES</term></keywords></textClass><langUsage><language ident="en"></language></langUsage></profileDesc><revisionDesc><change when="2019-12-20" who="#istex" xml:id="pub2tei">formatting</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><extension>txt</extension><original>false</original><mimetype>text/plain</mimetype><uri>https://api.istex.fr/ark:/67375/WNG-6R6BDBPS-C/fulltext.txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Wiley, elements deleted: body"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" standalone="yes"</istex:xmlDeclaration><istex:document><component version="2.0" type="serialArticle" xml:lang="en"><header><publicationMeta level="product"><publisherInfo><publisherName>Blackwell Publishing Ltd</publisherName><publisherLoc>Oxford, UK</publisherLoc></publisherInfo><doi origin="wiley" registered="yes">10.1111/(ISSN)1469-7998</doi><issn type="print">0952-8369</issn><issn type="electronic">1469-7998</issn><idGroup><id type="product" value="JZO"></id><id type="publisherDivision" value="ST"></id></idGroup><titleGroup><title type="main" sort="JOURNAL OF ZOOLOGY">Journal of Zoology</title></titleGroup></publicationMeta><publicationMeta level="part" position="07003"><doi origin="wiley">10.1111/jzo.2009.278.issue-3</doi><numberingGroup><numbering type="journalVolume" number="278">278</numbering><numbering type="journalIssue" number="3">3</numbering></numberingGroup><coverDate startDate="2009-07">July 2009</coverDate></publicationMeta><publicationMeta level="unit" type="article" position="6" status="forIssue"><doi origin="wiley">10.1111/j.1469-7998.2009.00570.x</doi><idGroup><id type="unit" value="JZO570"></id><id type="supplier" value="570"></id></idGroup><countGroup><count type="pageTotal" number="13"></count></countGroup><titleGroup><title type="tocHeading1">ORIGINAL ARTICLES</title></titleGroup><copyright>© 2009 The Authors. Journal compilation © 2009 The Zoological Society of London</copyright><eventGroup><event type="firstOnline" date="2009-04-17"></event><event type="publishedOnlineFinalForm" date="2009-06-22"></event><event type="xmlConverted" agent="Converter:BPG_TO_WML3G version:2.3.2 mode:FullText source:FullText result:FullText" date="2010-02-28"></event><event type="xmlConverted" agent="Converter:WILEY_ML3G_TO_WILEY_ML3GV2 version:3.8.8" date="2014-02-01"></event><event type="xmlConverted" agent="Converter:WML3G_To_WML3G version:4.1.7 mode:FullText,remove_FC" date="2014-10-31"></event></eventGroup><numberingGroup><numbering type="pageFirst" number="218">218</numbering><numbering type="pageLast" number="230">230</numbering></numberingGroup><correspondenceTo><b>Correspondence</b>
G. Veron, Muséum National d'Histoire Naturelle, Département Systématique et Evolution, UMR CNRS 7205, OSEB, 57 rue Cuvier 75231, Paris Cedex 05, France.
Email: <email normalForm="veron@mnhn.fr">veron@mnhn.fr</email></correspondenceTo><linkGroup><link type="toTypesetVersion" href="file:JZO.JZO570.pdf"></link></linkGroup></publicationMeta><contentMeta><unparsedEditorialHistory>Received 1 October 2008; revised 29 January 2009; accepted 23 February 2009</unparsedEditorialHistory><countGroup><count type="figureTotal" number="5"></count><count type="tableTotal" number="6"></count><count type="formulaTotal" number="0"></count><count type="referenceTotal" number="60"></count><count type="wordTotal" number="9564"></count><count type="linksCrossRef" number="81"></count></countGroup><titleGroup><title type="main">Low genetic diversity in the masked palm civet <i>Paguma larvata</i> (Viverridae)</title><title type="shortAuthors">M.‐L. Patou <i>et al.</i></title><title type="short">Genetic diversity in masked palm civet <i>Paguma larvata</i></title></titleGroup><creators><creator creatorRole="author" xml:id="cr1" affiliationRef="#a1" noteRef="#fn1"><personName><givenNames>M.‐L.</givenNames><familyName>Patou</familyName></personName></creator><creator creatorRole="author" xml:id="cr2" affiliationRef="#a2" noteRef="#fn1"><personName><givenNames>J.</givenNames><familyName>Chen</familyName></personName></creator><creator creatorRole="author" xml:id="cr3" affiliationRef="#a1" noteRef="#fn1"><personName><givenNames>L.</givenNames><familyName>Cosson</familyName></personName></creator><creator creatorRole="author" xml:id="cr4" affiliationRef="#a4"><personName><givenNames>D. H.</givenNames><familyName>Andersen</familyName></personName></creator><creator creatorRole="author" xml:id="cr5" affiliationRef="#a3"><personName><givenNames>C.</givenNames><familyName>Cruaud</familyName></personName></creator><creator creatorRole="author" xml:id="cr6" affiliationRef="#a3"><personName><givenNames>A.</givenNames><familyName>Couloux</familyName></personName></creator><creator creatorRole="author" xml:id="cr7" affiliationRef="#a4"><personName><givenNames>E.</givenNames><familyName>Randi</familyName></personName></creator><creator creatorRole="author" xml:id="cr8" affiliationRef="#a5"><personName><givenNames>S.</givenNames><familyName>Zhang</familyName></personName></creator><creator creatorRole="author" xml:id="cr9" affiliationRef="#a1"><personName><givenNames>G.</givenNames><familyName>Veron</familyName></personName></creator></creators><affiliationGroup><affiliation xml:id="a1" countryCode="FR"><unparsedAffiliation>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</unparsedAffiliation></affiliation><affiliation xml:id="a2" countryCode="CN"><unparsedAffiliation>South China Institute of Endangered Animals, Guangdong Academy of Sciences, Guangzhou 510260, P.R. China</unparsedAffiliation></affiliation><affiliation xml:id="a3" countryCode="FR"><unparsedAffiliation>Genoscope, Centre National de Séquençage, Evry Cedex, France</unparsedAffiliation></affiliation><affiliation xml:id="a4" countryCode="IT"><unparsedAffiliation>ISPRA Istituto Nazionale per la Fauna Selvatica, Ozzano dell′Emilia, BO, Italy</unparsedAffiliation></affiliation><affiliation xml:id="a5" countryCode="CN"><unparsedAffiliation>School of Life Science, East China Normal University, Shanghai, China</unparsedAffiliation></affiliation></affiliationGroup><keywordGroup xml:lang="en"><keyword xml:id="k1">Viverridae</keyword><keyword xml:id="k2"><i>Paguma larvata</i></keyword><keyword xml:id="k3">phylogeography</keyword><keyword xml:id="k4">mitochondrial genes</keyword><keyword xml:id="k5">microsatellites</keyword><keyword xml:id="k6">SARS</keyword></keywordGroup><abstractGroup><abstract type="main" xml:lang="en"><title type="main">Abstract</title><p>The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet <i>Paguma larvata</i>. First, two portions of mitochondrial genes, cytochrome <i>b</i> and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</p></abstract></abstractGroup></contentMeta><noteGroup><note xml:id="fn1" numbered="no"><p><sup>*</sup>Contributed equally to this work.</p></note><note xml:id="fn2" numbered="no"><p>Editor: John‐Nicolas Volff</p></note></noteGroup></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)</title></titleInfo><titleInfo type="abbreviated" lang="en"><title>Genetic diversity in masked palm civet Paguma larvata</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)</title></titleInfo><name type="personal"><namePart type="given">M.‐L.</namePart><namePart type="family">Patou</namePart><affiliation>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</affiliation><description>*Contributed equally to this work.</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.</namePart><namePart type="family">Chen</namePart><affiliation>South China Institute of Endangered Animals, Guangdong Academy of Sciences, Guangzhou 510260, P.R. China</affiliation><description>*Contributed equally to this work.</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">L.</namePart><namePart type="family">Cosson</namePart><affiliation>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</affiliation><description>*Contributed equally to this work.</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">D. H.</namePart><namePart type="family">Andersen</namePart><affiliation>ISPRA Istituto Nazionale per la Fauna Selvatica, Ozzano dell′Emilia, BO, Italy</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">C.</namePart><namePart type="family">Cruaud</namePart><affiliation>Genoscope, Centre National de Séquençage, Evry Cedex, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">A.</namePart><namePart type="family">Couloux</namePart><affiliation>Genoscope, Centre National de Séquençage, Evry Cedex, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">E.</namePart><namePart type="family">Randi</namePart><affiliation>ISPRA Istituto Nazionale per la Fauna Selvatica, Ozzano dell′Emilia, BO, Italy</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">S.</namePart><namePart type="family">Zhang</namePart><affiliation>School of Life Science, East China Normal University, Shanghai, China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">G.</namePart><namePart type="family">Veron</namePart><affiliation>Muséum National d'Histoire Naturelle, Département Systématique et Evolution, Paris Cedex, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-6N5SZHKN-D">article</genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><place><placeTerm type="text">Oxford, UK</placeTerm></place><dateIssued encoding="w3cdtf">2009-07</dateIssued><edition>Received 1 October 2008; revised 29 January 2009; accepted 23 February 2009</edition><copyrightDate encoding="w3cdtf">2009</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><extent unit="figures">5</extent><extent unit="tables">6</extent><extent unit="formulas">0</extent><extent unit="references">60</extent><extent unit="linksCrossRef">81</extent><extent unit="words">9564</extent></physicalDescription><abstract lang="en">The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</abstract><subject lang="en"><genre>keywords</genre><topic>Viverridae</topic><topic>Paguma larvata</topic><topic>phylogeography</topic><topic>mitochondrial genes</topic><topic>microsatellites</topic><topic>SARS</topic></subject><relatedItem type="host"><titleInfo><title>Journal of Zoology</title></titleInfo><genre type="journal" authority="ISTEX" authorityURI="https://publication-type.data.istex.fr" valueURI="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</genre><identifier type="ISSN">0952-8369</identifier><identifier type="eISSN">1469-7998</identifier><identifier type="DOI">10.1111/(ISSN)1469-7998</identifier><identifier type="PublisherID">JZO</identifier><part><date>2009</date><detail type="volume"><caption>vol.</caption><number>278</number></detail><detail type="issue"><caption>no.</caption><number>3</number></detail><extent unit="pages"><start>218</start><end>230</end><total>13</total></extent></part></relatedItem><relatedItem type="references" displayLabel="cit1"><titleInfo><title>Gapped BLAST and PSI‐BLAST</title></titleInfo><name type="personal"><namePart type="given">S.F.</namePart><namePart type="family">Altschul</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">T.L.</namePart><namePart type="family">Madden</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">A.A.</namePart><namePart type="family">Schäffer</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.Z.</namePart><namePart type="family">Zheng Zhang</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">W.</namePart><namePart type="family">Miller</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">D.J.</namePart><namePart type="family">Lipman</namePart><role><roleTerm type="text">author</roleTerm></role></name><genre>journal-article</genre><note type="citation/reference">Altschul, S.F., Madden, T.L., Schäffer, A.A., Zheng Zhang, J.Z., Miller, W. & Lipman, D.J. 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