SidaSubSaharaV1, PubMed, Checkpoint, bibRecord, 001893

Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.

Identifieur interne : 001893 ( PubMed/Checkpoint ); précédent : 001892; suivant : 001894

Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.

Auteurs : Damien C. Tully [États-Unis] ; Charles Wood

Source :

AIDS (London, England) [ 1473-5571 ] ; 2010.

RBID : pubmed:20539092

Descripteurs français

KwdFr :
- Histoire du 20ème siècle, Histoire du 21ème siècle, Humains, Infections à VIH (virologie), Infections à VIH (épidémiologie), Phylogénie, Théorème de Bayes, VIH-1 (Virus de l'Immunodéficience Humaine de type 1) (), VIH-1 (Virus de l'Immunodéficience Humaine de type 1) (physiologie), Épidémies (), Épidémies (histoire), Éthiopie (épidémiologie), Évolution moléculaire.
MESH :
- histoire : Épidémies.
- physiologie : VIH-1 (Virus de l'Immunodéficience Humaine de type 1).
- virologie : Infections à VIH.
- épidémiologie : Infections à VIH, Éthiopie.
- Histoire du 20ème siècle, Histoire du 21ème siècle, Humains, Phylogénie, Théorème de Bayes, VIH-1 (Virus de l'Immunodéficience Humaine de type 1), Épidémies, Évolution moléculaire.
Wicri :
- geographic : Éthiopie.

English descriptors

KwdEn :
- Bayes Theorem, Epidemics (history), Epidemics (statistics & numerical data), Ethiopia (epidemiology), Evolution, Molecular, HIV Infections (epidemiology), HIV Infections (virology), HIV-1 (classification), HIV-1 (physiology), History, 20th Century, History, 21st Century, Humans, Phylogeny.
MESH :
- geographic , epidemiology : Ethiopia.
- classification : HIV-1.
- epidemiology : HIV Infections.
- history : Epidemics.
- physiology : HIV-1.
- statistics & numerical data : Epidemics.
- virology : HIV Infections.
- Bayes Theorem, Evolution, Molecular, History, 20th Century, History, 21st Century, Humans, Phylogeny.

Abstract

To reconstruct the onset date and evolutionary history of the HIV-1 subtype C epidemic in Ethiopia - one of the earliest recorded subtype C epidemics in the world.

DOI: 10.1097/QAD.0b013e32833999e1
PubMed: 20539092

Affiliations:

États-Unis

Links toward previous steps (curation, corpus...)

to stream PubMed, to step Corpus: 000230
to stream PubMed, to step Curation: 000230

Links to Exploration step

pubmed:20539092

Le document en format XML

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<author><name sortKey="Tully, Damien C" sort="Tully, Damien C" uniqKey="Tully D" first="Damien C" last="Tully">Damien C. Tully</name>
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<term>Evolution, Molecular</term>
<term>HIV Infections (epidemiology)</term>
<term>HIV Infections (virology)</term>
<term>HIV-1 (classification)</term>
<term>HIV-1 (physiology)</term>
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<term>History, 21st Century</term>
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<term>Histoire du 21ème siècle</term>
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<term>Infections à VIH (virologie)</term>
<term>Infections à VIH (épidémiologie)</term>
<term>Phylogénie</term>
<term>Théorème de Bayes</term>
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<term>VIH-1 (Virus de l'Immunodéficience Humaine de type 1) (physiologie)</term>
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<term>Éthiopie (épidémiologie)</term>
<term>Évolution moléculaire</term>
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<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>HIV Infections</term>
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<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>VIH-1 (Virus de l'Immunodéficience Humaine de type 1)</term>
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<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>HIV-1</term>
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<keywords scheme="MESH" qualifier="statistics & numerical data" xml:lang="en"><term>Epidemics</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à VIH</term>
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<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>HIV Infections</term>
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<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Infections à VIH</term>
<term>Éthiopie</term>
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<term>Histoire du 21ème siècle</term>
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<term>Théorème de Bayes</term>
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<front><div type="abstract" xml:lang="en">To reconstruct the onset date and evolutionary history of the HIV-1 subtype C epidemic in Ethiopia - one of the earliest recorded subtype C epidemics in the world.</div>
</front>
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<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20539092</PMID>
<DateCreated><Year>2010</Year>
<Month>06</Month>
<Day>11</Day>
</DateCreated>
<DateCompleted><Year>2011</Year>
<Month>01</Month>
<Day>13</Day>
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<DateRevised><Year>2016</Year>
<Month>11</Month>
<Day>22</Day>
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<Issue>10</Issue>
<PubDate><Year>2010</Year>
<Month>Jun</Month>
<Day>19</Day>
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<Title>AIDS (London, England)</Title>
<ISOAbbreviation>AIDS</ISOAbbreviation>
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<ArticleTitle>Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.</ArticleTitle>
<Pagination><MedlinePgn>1577-82</MedlinePgn>
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<Abstract><AbstractText Label="OBJECTIVE" NlmCategory="OBJECTIVE">To reconstruct the onset date and evolutionary history of the HIV-1 subtype C epidemic in Ethiopia - one of the earliest recorded subtype C epidemics in the world.</AbstractText>
<AbstractText Label="DESIGN" NlmCategory="METHODS">HIV-1 C env sequences with a known sampling year isolated from HIV-1 positive patients from Ethiopia between 1984 and 2003.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">Evolutionary parameters including origin and demographic growth patterns were estimated using a Bayesian coalescent-based approach under either strict or relaxed molecular clock models.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">Bayesian evolutionary analysis indicated a most recent common ancestor date of 1965 with three distinct epidemic growth phases. Regression analysis of root-to-tip distances revealed a highly similar estimate for the origin of the clade. In addition, we reveal that the HIV-1C epidemic in Ethiopia has grown at a faster rate than the epidemic of subtype C in sub-Saharan Africa.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Reconstruction of the epidemic history in Ethiopia revealed that subtype C likely originated from either a single lineage or multiple descendents in the late 1960s or early 1970s where it grew exponentially throughout the mid-1970s and early 1980s, corresponding to a wave of urbanization and migration. In light of these findings, we suggest that subtype C strains were circulating at least a decade before previous estimates and the first recognition of symptomatic patients in Ethiopia. The timing of the Ethiopian epidemic is also in agreement with similar HIV-1 epidemics in sub-Saharan Africa.</AbstractText>
</Abstract>
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<ForeName>Damien C</ForeName>
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	Le SIDA en Afrique subsaharienne (serveur d'exploration)
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Le SIDA en Afrique subsaharienne (serveur d'exploration)

Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.

Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia.

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