Le SIDA en Afrique subsaharienne (serveur d'exploration)

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Estimating Incidence from Prevalence in Generalised HIV Epidemics: Methods and Validation

Identifieur interne : 000574 ( Ncbi/Curation ); précédent : 000573; suivant : 000575

Estimating Incidence from Prevalence in Generalised HIV Epidemics: Methods and Validation

Auteurs : Timothy B. Hallett [Royaume-Uni] ; Basia Zaba [Royaume-Uni, Tanzanie] ; Jim Todd [Ouganda] ; Ben Lopman [Royaume-Uni] ; Wambura Mwita [Tanzanie] ; Sam Biraro [Ouganda] ; Simon Gregson [Royaume-Uni, Zimbabwe] ; J. Ties Boerma [Suisse]

Source :

RBID : PMC:2288620

Abstract

Background

HIV surveillance of generalised epidemics in Africa primarily relies on prevalence at antenatal clinics, but estimates of incidence in the general population would be more useful. Repeated cross-sectional measures of HIV prevalence are now becoming available for general populations in many countries, and we aim to develop and validate methods that use these data to estimate HIV incidence.

Methods and Findings

Two methods were developed that decompose observed changes in prevalence between two serosurveys into the contributions of new infections and mortality. Method 1 uses cohort mortality rates, and method 2 uses information on survival after infection. The performance of these two methods was assessed using simulated data from a mathematical model and actual data from three community-based cohort studies in Africa. Comparison with simulated data indicated that these methods can accurately estimates incidence rates and changes in incidence in a variety of epidemic conditions. Method 1 is simple to implement but relies on locally appropriate mortality data, whilst method 2 can make use of the same survival distribution in a wide range of scenarios. The estimates from both methods are within the 95% confidence intervals of almost all actual measurements of HIV incidence in adults and young people, and the patterns of incidence over age are correctly captured.

Conclusions

It is possible to estimate incidence from cross-sectional prevalence data with sufficient accuracy to monitor the HIV epidemic. Although these methods will theoretically work in any context, we have able to test them only in southern and eastern Africa, where HIV epidemics are mature and generalised. The choice of method will depend on the local availability of HIV mortality data.


Url:
DOI: 10.1371/journal.pmed.0050080
PubMed: 18590346
PubMed Central: 2288620

Links toward previous steps (curation, corpus...)


Links to Exploration step

PMC:2288620

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Estimating Incidence from Prevalence in Generalised HIV Epidemics: Methods and Validation</title>
<author>
<name sortKey="Hallett, Timothy B" sort="Hallett, Timothy B" uniqKey="Hallett T" first="Timothy B" last="Hallett">Timothy B. Hallett</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zaba, Basia" sort="Zaba, Basia" uniqKey="Zaba B" first="Basia" last="Zaba">Basia Zaba</name>
<affiliation wicri:level="3">
<nlm:aff id="aff2"> London School of Hygiene and Tropical Medicine, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> London School of Hygiene and Tropical Medicine, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff3"> National Institute for Medical Research, Mwanza, Tanzania</nlm:aff>
<country xml:lang="fr">Tanzanie</country>
<wicri:regionArea> National Institute for Medical Research, Mwanza</wicri:regionArea>
<wicri:noRegion>Mwanza</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Todd, Jim" sort="Todd, Jim" uniqKey="Todd J" first="Jim" last="Todd">Jim Todd</name>
<affiliation wicri:level="1">
<nlm:aff id="aff4"> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe, Uganda</nlm:aff>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe</wicri:regionArea>
<wicri:noRegion>Entebbe</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lopman, Ben" sort="Lopman, Ben" uniqKey="Lopman B" first="Ben" last="Lopman">Ben Lopman</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Mwita, Wambura" sort="Mwita, Wambura" uniqKey="Mwita W" first="Wambura" last="Mwita">Wambura Mwita</name>
<affiliation wicri:level="1">
<nlm:aff id="aff3"> National Institute for Medical Research, Mwanza, Tanzania</nlm:aff>
<country xml:lang="fr">Tanzanie</country>
<wicri:regionArea> National Institute for Medical Research, Mwanza</wicri:regionArea>
<wicri:noRegion>Mwanza</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Biraro, Sam" sort="Biraro, Sam" uniqKey="Biraro S" first="Sam" last="Biraro">Sam Biraro</name>
<affiliation wicri:level="1">
<nlm:aff id="aff4"> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe, Uganda</nlm:aff>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe</wicri:regionArea>
<wicri:noRegion>Entebbe</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Gregson, Simon" sort="Gregson, Simon" uniqKey="Gregson S" first="Simon" last="Gregson">Simon Gregson</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff5"> Biomedical Research and Training Institute, Harare, Zimbabwe</nlm:aff>
<country xml:lang="fr">Zimbabwe</country>
<wicri:regionArea> Biomedical Research and Training Institute, Harare</wicri:regionArea>
<wicri:noRegion>Harare</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Boerma, J Ties" sort="Boerma, J Ties" uniqKey="Boerma J" first="J. Ties" last="Boerma">J. Ties Boerma</name>
<affiliation wicri:level="1">
<nlm:aff id="aff6"> World Health Organization, Geneva, Switzerland</nlm:aff>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea> World Health Organization, Geneva</wicri:regionArea>
<wicri:noRegion>Geneva</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">18590346</idno>
<idno type="pmc">2288620</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2288620</idno>
<idno type="RBID">PMC:2288620</idno>
<idno type="doi">10.1371/journal.pmed.0050080</idno>
<date when="2008">2008</date>
<idno type="wicri:Area/Pmc/Corpus">001143</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001143</idno>
<idno type="wicri:Area/Pmc/Curation">001142</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001142</idno>
<idno type="wicri:Area/Pmc/Checkpoint">002A06</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">002A06</idno>
<idno type="wicri:Area/Ncbi/Merge">000574</idno>
<idno type="wicri:Area/Ncbi/Curation">000574</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Estimating Incidence from Prevalence in Generalised HIV Epidemics: Methods and Validation</title>
<author>
<name sortKey="Hallett, Timothy B" sort="Hallett, Timothy B" uniqKey="Hallett T" first="Timothy B" last="Hallett">Timothy B. Hallett</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zaba, Basia" sort="Zaba, Basia" uniqKey="Zaba B" first="Basia" last="Zaba">Basia Zaba</name>
<affiliation wicri:level="3">
<nlm:aff id="aff2"> London School of Hygiene and Tropical Medicine, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> London School of Hygiene and Tropical Medicine, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff3"> National Institute for Medical Research, Mwanza, Tanzania</nlm:aff>
<country xml:lang="fr">Tanzanie</country>
<wicri:regionArea> National Institute for Medical Research, Mwanza</wicri:regionArea>
<wicri:noRegion>Mwanza</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Todd, Jim" sort="Todd, Jim" uniqKey="Todd J" first="Jim" last="Todd">Jim Todd</name>
<affiliation wicri:level="1">
<nlm:aff id="aff4"> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe, Uganda</nlm:aff>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe</wicri:regionArea>
<wicri:noRegion>Entebbe</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lopman, Ben" sort="Lopman, Ben" uniqKey="Lopman B" first="Ben" last="Lopman">Ben Lopman</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Mwita, Wambura" sort="Mwita, Wambura" uniqKey="Mwita W" first="Wambura" last="Mwita">Wambura Mwita</name>
<affiliation wicri:level="1">
<nlm:aff id="aff3"> National Institute for Medical Research, Mwanza, Tanzania</nlm:aff>
<country xml:lang="fr">Tanzanie</country>
<wicri:regionArea> National Institute for Medical Research, Mwanza</wicri:regionArea>
<wicri:noRegion>Mwanza</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Biraro, Sam" sort="Biraro, Sam" uniqKey="Biraro S" first="Sam" last="Biraro">Sam Biraro</name>
<affiliation wicri:level="1">
<nlm:aff id="aff4"> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe, Uganda</nlm:aff>
<country xml:lang="fr">Ouganda</country>
<wicri:regionArea> Medical Research Council/Uganda Virus Research Institute, Uganda Research Unit on AIDS, Entebbe</wicri:regionArea>
<wicri:noRegion>Entebbe</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Gregson, Simon" sort="Gregson, Simon" uniqKey="Gregson S" first="Simon" last="Gregson">Simon Gregson</name>
<affiliation wicri:level="3">
<nlm:aff id="aff1"> Imperial College London, London, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea> Imperial College London, London</wicri:regionArea>
<placeName>
<settlement type="city">Londres</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Grand Londres</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff5"> Biomedical Research and Training Institute, Harare, Zimbabwe</nlm:aff>
<country xml:lang="fr">Zimbabwe</country>
<wicri:regionArea> Biomedical Research and Training Institute, Harare</wicri:regionArea>
<wicri:noRegion>Harare</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Boerma, J Ties" sort="Boerma, J Ties" uniqKey="Boerma J" first="J. Ties" last="Boerma">J. Ties Boerma</name>
<affiliation wicri:level="1">
<nlm:aff id="aff6"> World Health Organization, Geneva, Switzerland</nlm:aff>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea> World Health Organization, Geneva</wicri:regionArea>
<wicri:noRegion>Geneva</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">PLoS Medicine</title>
<idno type="ISSN">1549-1277</idno>
<idno type="eISSN">1549-1676</idno>
<imprint>
<date when="2008">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<sec id="st1">
<title>Background</title>
<p>HIV surveillance of generalised epidemics in Africa primarily relies on prevalence at antenatal clinics, but estimates of incidence in the general population would be more useful. Repeated cross-sectional measures of HIV prevalence are now becoming available for general populations in many countries, and we aim to develop and validate methods that use these data to estimate HIV incidence.</p>
</sec>
<sec id="st2">
<title>Methods and Findings</title>
<p>Two methods were developed that decompose observed changes in prevalence between two serosurveys into the contributions of new infections and mortality. Method 1 uses cohort mortality rates, and method 2 uses information on survival after infection. The performance of these two methods was assessed using simulated data from a mathematical model and actual data from three community-based cohort studies in Africa. Comparison with simulated data indicated that these methods can accurately estimates incidence rates and changes in incidence in a variety of epidemic conditions. Method 1 is simple to implement but relies on locally appropriate mortality data, whilst method 2 can make use of the same survival distribution in a wide range of scenarios. The estimates from both methods are within the 95% confidence intervals of almost all actual measurements of HIV incidence in adults and young people, and the patterns of incidence over age are correctly captured.</p>
</sec>
<sec id="st3">
<title>Conclusions</title>
<p>It is possible to estimate incidence from cross-sectional prevalence data with sufficient accuracy to monitor the HIV epidemic. Although these methods will theoretically work in any context, we have able to test them only in southern and eastern Africa, where HIV epidemics are mature and generalised. The choice of method will depend on the local availability of HIV mortality data.</p>
</sec>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
</listBibl>
</div1>
</back>
</TEI>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/SidaSubSaharaV1/Data/Ncbi/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000574 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000574 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Sante
   |area=    SidaSubSaharaV1
   |flux=    Ncbi
   |étape=   Curation
   |type=    RBID
   |clé=     PMC:2288620
   |texte=   Estimating Incidence from Prevalence in Generalised HIV Epidemics: Methods and Validation
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i   -Sk "pubmed:18590346" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a SidaSubSaharaV1 

Wicri

This area was generated with Dilib version V0.6.32.
Data generation: Mon Nov 13 19:31:10 2017. Site generation: Wed Mar 6 19:14:32 2024