Mortality amongst patients with influenza-associated severe acute respiratory illness, South Africa, 2009-2013.
Identifieur interne : 000797 ( PubMed/Curation ); précédent : 000796; suivant : 000798Mortality amongst patients with influenza-associated severe acute respiratory illness, South Africa, 2009-2013.
Auteurs : Cheryl Cohen [Afrique du Sud] ; Jocelyn Moyes [Afrique du Sud] ; Stefano Tempia [Afrique du Sud] ; Michelle Groome [Afrique du Sud] ; Sibongile Walaza [Afrique du Sud] ; Marthi Pretorius ; Halima Dawood [Afrique du Sud] ; Meera Chhagan [Afrique du Sud] ; Summaya Haffejee [Afrique du Sud] ; Ebrahim Variava [Afrique du Sud] ; Kathleen Kahn [Ghana] ; Anne Von Gottberg [Afrique du Sud] ; Nicole Wolter [Afrique du Sud] ; Adam L. Cohen [Afrique du Sud] ; Babatyi Malope-Kgokong [Afrique du Sud] ; Marietjie Venter [Afrique du Sud] ; Shabir A. Madhi [Afrique du Sud]Source :
- PloS one [ 1932-6203 ] ; 2015.
Descripteurs français
- KwdFr :
- Adolescent, Adulte, Adulte d'âge moyen, Enfant, Enfant d'âge préscolaire, Facteurs de risque, Femelle, Grippe humaine (), Grippe humaine (mortalité), Grippe humaine (épidémiologie), Humains, Hôpitaux, Incidence, Infections de l'appareil respiratoire (), Infections de l'appareil respiratoire (mortalité), Infections de l'appareil respiratoire (virologie), Infections de l'appareil respiratoire (épidémiologie), Jeune adulte, Maladie aigüe (mortalité), Maladie aigüe (épidémiologie), Mâle, Nourrisson, République d'Afrique du Sud (épidémiologie), Saisons, Sujet âgé, Surveillance sentinelle.
- MESH :
- mortalité : Grippe humaine, Infections de l'appareil respiratoire, Maladie aigüe.
- virologie : Infections de l'appareil respiratoire.
- épidémiologie : Grippe humaine, Infections de l'appareil respiratoire, Maladie aigüe, République d'Afrique du Sud.
- Adolescent, Adulte, Adulte d'âge moyen, Enfant, Enfant d'âge préscolaire, Facteurs de risque, Femelle, Grippe humaine, Humains, Hôpitaux, Incidence, Infections de l'appareil respiratoire, Jeune adulte, Mâle, Nourrisson, Saisons, Sujet âgé, Surveillance sentinelle.
- Wicri :
- geographic : Afrique du Sud.
English descriptors
- KwdEn :
- Acute Disease (epidemiology), Acute Disease (mortality), Adolescent, Adult, Aged, Child, Child, Preschool, Female, Hospitals, Humans, Incidence, Infant, Influenza, Human (complications), Influenza, Human (epidemiology), Influenza, Human (mortality), Male, Middle Aged, Respiratory Tract Infections (complications), Respiratory Tract Infections (epidemiology), Respiratory Tract Infections (mortality), Respiratory Tract Infections (virology), Risk Factors, Seasons, Sentinel Surveillance, South Africa (epidemiology), Young Adult.
- MESH :
- geographic , epidemiology : South Africa.
- complications : Influenza, Human, Respiratory Tract Infections.
- epidemiology : Acute Disease, Influenza, Human, Respiratory Tract Infections.
- mortality : Acute Disease, Influenza, Human, Respiratory Tract Infections.
- virology : Respiratory Tract Infections.
- Adolescent, Adult, Aged, Child, Child, Preschool, Female, Hospitals, Humans, Incidence, Infant, Male, Middle Aged, Risk Factors, Seasons, Sentinel Surveillance, Young Adult.
Abstract
Data on the burden and risk groups for influenza-associated mortality from Africa are limited. We aimed to estimate the incidence and risk-factors for in-hospital influenza-associated severe acute respiratory illness (SARI) deaths.
DOI: 10.1371/journal.pone.0118884
PubMed: 25786103
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Marthi Pretorius<affiliation><nlm:affiliation>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria.</nlm:affiliation>
<wicri:noCountry code="subField">University of Pretoria</wicri:noCountry>
</affiliation>
Le document en format XML
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<author><name sortKey="Walaza, Sibongile" sort="Walaza, Sibongile" uniqKey="Walaza S" first="Sibongile" last="Walaza">Sibongile Walaza</name>
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<author><name sortKey="Dawood, Halima" sort="Dawood, Halima" uniqKey="Dawood H" first="Halima" last="Dawood">Halima Dawood</name>
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<author><name sortKey="Chhagan, Meera" sort="Chhagan, Meera" uniqKey="Chhagan M" first="Meera" last="Chhagan">Meera Chhagan</name>
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<author><name sortKey="Haffejee, Summaya" sort="Haffejee, Summaya" uniqKey="Haffejee S" first="Summaya" last="Haffejee">Summaya Haffejee</name>
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<author><name sortKey="Variava, Ebrahim" sort="Variava, Ebrahim" uniqKey="Variava E" first="Ebrahim" last="Variava">Ebrahim Variava</name>
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<author><name sortKey="Von Gottberg, Anne" sort="Von Gottberg, Anne" uniqKey="Von Gottberg A" first="Anne" last="Von Gottberg">Anne Von Gottberg</name>
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<author><name sortKey="Cohen, Adam L" sort="Cohen, Adam L" uniqKey="Cohen A" first="Adam L" last="Cohen">Adam L. Cohen</name>
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</affiliation>
</author>
<author><name sortKey="Malope Kgokong, Babatyi" sort="Malope Kgokong, Babatyi" uniqKey="Malope Kgokong B" first="Babatyi" last="Malope-Kgokong">Babatyi Malope-Kgokong</name>
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</affiliation>
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<author><name sortKey="Venter, Marietjie" sort="Venter, Marietjie" uniqKey="Venter M" first="Marietjie" last="Venter">Marietjie Venter</name>
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<wicri:regionArea>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria; Global Disease Detection, United States Centers for Disease Control and Prevention-South Africa, Pretoria</wicri:regionArea>
</affiliation>
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<author><name sortKey="Madhi, Shabir A" sort="Madhi, Shabir A" uniqKey="Madhi S" first="Shabir A" last="Madhi">Shabir A. Madhi</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Mortality amongst patients with influenza-associated severe acute respiratory illness, South Africa, 2009-2013.</title>
<author><name sortKey="Cohen, Cheryl" sort="Cohen, Cheryl" uniqKey="Cohen C" first="Cheryl" last="Cohen">Cheryl Cohen</name>
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</affiliation>
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<author><name sortKey="Moyes, Jocelyn" sort="Moyes, Jocelyn" uniqKey="Moyes J" first="Jocelyn" last="Moyes">Jocelyn Moyes</name>
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<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Tempia, Stefano" sort="Tempia, Stefano" uniqKey="Tempia S" first="Stefano" last="Tempia">Stefano Tempia</name>
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<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America; Influenza Programme, Centers for Disease Control and Prevention-South Africa, Pretoria</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Groome, Michelle" sort="Groome, Michelle" uniqKey="Groome M" first="Michelle" last="Groome">Michelle Groome</name>
<affiliation wicri:level="4"><nlm:affiliation>Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases; University of the Witwatersrand; Johannesburg; South Africa.</nlm:affiliation>
<orgName type="university">Université du Witwatersrand</orgName>
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<placeName><settlement type="city">Johannesbourg</settlement>
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</placeName>
</affiliation>
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<author><name sortKey="Walaza, Sibongile" sort="Walaza, Sibongile" uniqKey="Walaza S" first="Sibongile" last="Walaza">Sibongile Walaza</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Pretorius, Marthi" sort="Pretorius, Marthi" uniqKey="Pretorius M" first="Marthi" last="Pretorius">Marthi Pretorius</name>
<affiliation><nlm:affiliation>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria.</nlm:affiliation>
<wicri:noCountry code="subField">University of Pretoria</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Dawood, Halima" sort="Dawood, Halima" uniqKey="Dawood H" first="Halima" last="Dawood">Halima Dawood</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Medicine, Pietermaritzburg Metropolitan Hospital, Pietermaritzburg, South Africa; Department of Medicine, University of KwaZulu Natal, Durban, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Medicine, Pietermaritzburg Metropolitan Hospital, Pietermaritzburg, South Africa; Department of Medicine, University of KwaZulu Natal, Durban</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Chhagan, Meera" sort="Chhagan, Meera" uniqKey="Chhagan M" first="Meera" last="Chhagan">Meera Chhagan</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Paediatrics, University of KwaZulu Natal, Durban, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Paediatrics, University of KwaZulu Natal, Durban</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Haffejee, Summaya" sort="Haffejee, Summaya" uniqKey="Haffejee S" first="Summaya" last="Haffejee">Summaya Haffejee</name>
<affiliation wicri:level="1"><nlm:affiliation>School of Pathology, University of KwaZulu Natal, Durban, South Africa.</nlm:affiliation>
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<wicri:regionArea>School of Pathology, University of KwaZulu Natal, Durban</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Variava, Ebrahim" sort="Variava, Ebrahim" uniqKey="Variava E" first="Ebrahim" last="Variava">Ebrahim Variava</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Medicine, Klerksdorp Tshepong Hospital; Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Department of Medicine, Klerksdorp Tshepong Hospital; Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Kahn, Kathleen" sort="Kahn, Kathleen" uniqKey="Kahn K" first="Kathleen" last="Kahn">Kathleen Kahn</name>
<affiliation wicri:level="1"><nlm:affiliation>MRC/Wits Rural Public Health and Health Transitions Research Unit (Agincourt), School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Centre for Global Health Research, Umeå University, Umeå, Sweden; INDEPTH Network, Accra, Ghana.</nlm:affiliation>
<country xml:lang="fr">Ghana</country>
<wicri:regionArea>MRC/Wits Rural Public Health and Health Transitions Research Unit (Agincourt), School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Centre for Global Health Research, Umeå University, Umeå, Sweden; INDEPTH Network, Accra</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Von Gottberg, Anne" sort="Von Gottberg, Anne" uniqKey="Von Gottberg A" first="Anne" last="Von Gottberg">Anne Von Gottberg</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Wolter, Nicole" sort="Wolter, Nicole" uniqKey="Wolter N" first="Nicole" last="Wolter">Nicole Wolter</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Cohen, Adam L" sort="Cohen, Adam L" uniqKey="Cohen A" first="Adam L" last="Cohen">Adam L. Cohen</name>
<affiliation wicri:level="1"><nlm:affiliation>Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America; Influenza Programme, Centers for Disease Control and Prevention-South Africa, Pretoria, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America; Influenza Programme, Centers for Disease Control and Prevention-South Africa, Pretoria</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Malope Kgokong, Babatyi" sort="Malope Kgokong, Babatyi" uniqKey="Malope Kgokong B" first="Babatyi" last="Malope-Kgokong">Babatyi Malope-Kgokong</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Venter, Marietjie" sort="Venter, Marietjie" uniqKey="Venter M" first="Marietjie" last="Venter">Marietjie Venter</name>
<affiliation wicri:level="1"><nlm:affiliation>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria; Global Disease Detection, United States Centers for Disease Control and Prevention-South Africa, Pretoria, South Africa.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria; Global Disease Detection, United States Centers for Disease Control and Prevention-South Africa, Pretoria</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Madhi, Shabir A" sort="Madhi, Shabir A" uniqKey="Madhi S" first="Shabir A" last="Madhi">Shabir A. Madhi</name>
<affiliation wicri:level="4"><nlm:affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases; University of the Witwatersrand; Johannesburg; South Africa.</nlm:affiliation>
<orgName type="university">Université du Witwatersrand</orgName>
<country>Afrique du Sud</country>
<placeName><settlement type="city">Johannesbourg</settlement>
<region type="region" nuts="2">Gauteng</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acute Disease (epidemiology)</term>
<term>Acute Disease (mortality)</term>
<term>Adolescent</term>
<term>Adult</term>
<term>Aged</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Female</term>
<term>Hospitals</term>
<term>Humans</term>
<term>Incidence</term>
<term>Infant</term>
<term>Influenza, Human (complications)</term>
<term>Influenza, Human (epidemiology)</term>
<term>Influenza, Human (mortality)</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Respiratory Tract Infections (complications)</term>
<term>Respiratory Tract Infections (epidemiology)</term>
<term>Respiratory Tract Infections (mortality)</term>
<term>Respiratory Tract Infections (virology)</term>
<term>Risk Factors</term>
<term>Seasons</term>
<term>Sentinel Surveillance</term>
<term>South Africa (epidemiology)</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Enfant</term>
<term>Enfant d'âge préscolaire</term>
<term>Facteurs de risque</term>
<term>Femelle</term>
<term>Grippe humaine ()</term>
<term>Grippe humaine (mortalité)</term>
<term>Grippe humaine (épidémiologie)</term>
<term>Humains</term>
<term>Hôpitaux</term>
<term>Incidence</term>
<term>Infections de l'appareil respiratoire ()</term>
<term>Infections de l'appareil respiratoire (mortalité)</term>
<term>Infections de l'appareil respiratoire (virologie)</term>
<term>Infections de l'appareil respiratoire (épidémiologie)</term>
<term>Jeune adulte</term>
<term>Maladie aigüe (mortalité)</term>
<term>Maladie aigüe (épidémiologie)</term>
<term>Mâle</term>
<term>Nourrisson</term>
<term>République d'Afrique du Sud (épidémiologie)</term>
<term>Saisons</term>
<term>Sujet âgé</term>
<term>Surveillance sentinelle</term>
</keywords>
<keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>South Africa</term>
</keywords>
<keywords scheme="MESH" qualifier="complications" xml:lang="en"><term>Influenza, Human</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Acute Disease</term>
<term>Influenza, Human</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="mortality" xml:lang="en"><term>Acute Disease</term>
<term>Influenza, Human</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="mortalité" xml:lang="fr"><term>Grippe humaine</term>
<term>Infections de l'appareil respiratoire</term>
<term>Maladie aigüe</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Grippe humaine</term>
<term>Infections de l'appareil respiratoire</term>
<term>Maladie aigüe</term>
<term>République d'Afrique du Sud</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Adolescent</term>
<term>Adult</term>
<term>Aged</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Female</term>
<term>Hospitals</term>
<term>Humans</term>
<term>Incidence</term>
<term>Infant</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Risk Factors</term>
<term>Seasons</term>
<term>Sentinel Surveillance</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Enfant</term>
<term>Enfant d'âge préscolaire</term>
<term>Facteurs de risque</term>
<term>Femelle</term>
<term>Grippe humaine</term>
<term>Humains</term>
<term>Hôpitaux</term>
<term>Incidence</term>
<term>Infections de l'appareil respiratoire</term>
<term>Jeune adulte</term>
<term>Mâle</term>
<term>Nourrisson</term>
<term>Saisons</term>
<term>Sujet âgé</term>
<term>Surveillance sentinelle</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Afrique du Sud</term>
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<front><div type="abstract" xml:lang="en">Data on the burden and risk groups for influenza-associated mortality from Africa are limited. We aimed to estimate the incidence and risk-factors for in-hospital influenza-associated severe acute respiratory illness (SARI) deaths.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25786103</PMID>
<DateCreated><Year>2015</Year>
<Month>03</Month>
<Day>19</Day>
</DateCreated>
<DateCompleted><Year>2016</Year>
<Month>02</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised><Year>2016</Year>
<Month>10</Month>
<Day>19</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>10</Volume>
<Issue>3</Issue>
<PubDate><Year>2015</Year>
</PubDate>
</JournalIssue>
<Title>PloS one</Title>
<ISOAbbreviation>PLoS ONE</ISOAbbreviation>
</Journal>
<ArticleTitle>Mortality amongst patients with influenza-associated severe acute respiratory illness, South Africa, 2009-2013.</ArticleTitle>
<Pagination><MedlinePgn>e0118884</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0118884</ELocationID>
<Abstract><AbstractText Label="INTRODUCTION" NlmCategory="BACKGROUND">Data on the burden and risk groups for influenza-associated mortality from Africa are limited. We aimed to estimate the incidence and risk-factors for in-hospital influenza-associated severe acute respiratory illness (SARI) deaths.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">Hospitalised patients with SARI were enrolled prospectively in four provinces of South Africa from 2009-2013. Using polymerase chain reaction, respiratory samples were tested for ten respiratory viruses and blood for pneumococcal DNA. The incidence of influenza-associated SARI deaths was estimated at one urban hospital with a defined catchment population.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We enrolled 1376 patients with influenza-associated SARI and 3% (41 of 1358 with available outcome data) died. In patients with available HIV-status, the case-fatality proportion (CFP) was higher in HIV-infected (5%, 22/419) than HIV-uninfected individuals (2%, 13/620; p = 0.006). CFPs varied by age group, and generally increased with increasing age amongst individuals >5 years (p<0.001). On multivariable analysis, factors associated with death were age-group 45-64 years (odds ratio (OR) 4.0, 95% confidence interval (CI) 1.01-16.3) and ≥65 years (OR 6.5, 95%CI 1.2-34.3) compared to 1-4 year age-group who had the lowest CFP, HIV-infection (OR 2.9, 95%CI 1.1-7.8), underlying medical conditions other than HIV (OR 2.9, 95%CI 1.2-7.3) and pneumococcal co-infection (OR 4.1, 95%CI 1.5-11.2). The estimated incidence of influenza-associated SARI deaths per 100,000 population was highest in children <1 year (20.1, 95%CI 12.1-31.3) and adults aged 45-64 years (10.4, 95%CI 8.4-12.9). Adjusting for age, the rate of death was 20-fold (95%CI 15.0-27.8) higher in HIV-infected individuals than HIV-uninfected individuals.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Influenza causes substantial mortality in urban South Africa, particularly in infants aged <1 year and HIV-infected individuals. More widespread access to antiretroviral treatment and influenza vaccination may reduce this burden.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cohen</LastName>
<ForeName>Cheryl</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Moyes</LastName>
<ForeName>Jocelyn</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tempia</LastName>
<ForeName>Stefano</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America; Influenza Programme, Centers for Disease Control and Prevention-South Africa, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Groome</LastName>
<ForeName>Michelle</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases; University of the Witwatersrand; Johannesburg; South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Walaza</LastName>
<ForeName>Sibongile</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pretorius</LastName>
<ForeName>Marthi</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Dawood</LastName>
<ForeName>Halima</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Department of Medicine, Pietermaritzburg Metropolitan Hospital, Pietermaritzburg, South Africa; Department of Medicine, University of KwaZulu Natal, Durban, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chhagan</LastName>
<ForeName>Meera</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Department of Paediatrics, University of KwaZulu Natal, Durban, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Haffejee</LastName>
<ForeName>Summaya</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>School of Pathology, University of KwaZulu Natal, Durban, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Variava</LastName>
<ForeName>Ebrahim</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Department of Medicine, Klerksdorp Tshepong Hospital; Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kahn</LastName>
<ForeName>Kathleen</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>MRC/Wits Rural Public Health and Health Transitions Research Unit (Agincourt), School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Centre for Global Health Research, Umeå University, Umeå, Sweden; INDEPTH Network, Accra, Ghana.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>von Gottberg</LastName>
<ForeName>Anne</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wolter</LastName>
<ForeName>Nicole</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cohen</LastName>
<ForeName>Adam L</ForeName>
<Initials>AL</Initials>
<AffiliationInfo><Affiliation>Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America; Influenza Programme, Centers for Disease Control and Prevention-South Africa, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Malope-Kgokong</LastName>
<ForeName>Babatyi</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Venter</LastName>
<ForeName>Marietjie</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Zoonosis Research Unit, Department of Medical Virology, University of Pretoria; Global Disease Detection, United States Centers for Disease Control and Prevention-South Africa, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Madhi</LastName>
<ForeName>Shabir A</ForeName>
<Initials>SA</Initials>
<AffiliationInfo><Affiliation>Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Medical Research Council, Respiratory and Meningeal Pathogens Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Department of Science and Technology/National Research Foundation: Vaccine Preventable Diseases; University of the Witwatersrand; Johannesburg; South Africa.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>U51/IP000155-04</GrantID>
<Acronym>IP</Acronym>
<Agency>NCIRD CDC HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
<PublicationType UI="D013487">Research Support, U.S. Gov't, P.H.S.</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>03</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>PLoS One</MedlineTA>
<NlmUniqueID>101285081</NlmUniqueID>
<ISSNLinking>1932-6203</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000208" MajorTopicYN="N">Acute Disease</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000401" MajorTopicYN="N">mortality</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000293" MajorTopicYN="N">Adolescent</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000368" MajorTopicYN="N">Aged</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002648" MajorTopicYN="N">Child</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002675" MajorTopicYN="N">Child, Preschool</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006761" MajorTopicYN="N">Hospitals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015994" MajorTopicYN="N">Incidence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007223" MajorTopicYN="N">Infant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName>
<QualifierName UI="Q000150" MajorTopicYN="Y">complications</QualifierName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000401" MajorTopicYN="N">mortality</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012141" MajorTopicYN="N">Respiratory Tract Infections</DescriptorName>
<QualifierName UI="Q000150" MajorTopicYN="Y">complications</QualifierName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000401" MajorTopicYN="Y">mortality</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012307" MajorTopicYN="N">Risk Factors</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018571" MajorTopicYN="N">Sentinel Surveillance</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013019" MajorTopicYN="N" Type="Geographic">South Africa</DescriptorName>
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