Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B.
Identifieur interne : 000891 ( PubMed/Checkpoint ); précédent : 000890; suivant : 000892Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B.
Auteurs : Eleonora Cella [Italie] ; Alessandra Lo Presti [Italie] ; Marta Giovanetti [Italie] ; Carla Veo [Italie] ; Alessia Lai [Italie] ; Giordano Dicuonzo [Italie] ; Silvia Angeletti [Italie] ; Marco Ciotti [Italie] ; Gianguglielmo Zehender [Italie] ; Massimo Ciccozzi [Italie]Source :
- Journal of global infectious diseases [ 0974-777X ]
Abstract
Human immunodeficiency virus type 2 (HIV-2) infections are mainly restricted to West Africa; however, in the recent years, the prevalence of HIV-2 is a growing concern in some European countries and the Southwestern region of India. Despite the presence of different HIV-2 groups, only A and B Groups have established human-to-human transmission chains.
DOI: 10.4103/0974-777X.188592
PubMed: 27621561
Affiliations:
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Sacco, University of Milan, Milan, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biomedical and Clinical Sciences L. 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Sacco, University of Milan, Milan, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan</wicri:regionArea><placeName><settlement type="city">Milan</settlement><region nuts="2">Lombardie</region></placeName></affiliation></author><author><name sortKey="Lai, Alessia" sort="Lai, Alessia" uniqKey="Lai A" first="Alessia" last="Lai">Alessia Lai</name><affiliation wicri:level="3"><nlm:affiliation>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan</wicri:regionArea><placeName><settlement type="city">Milan</settlement><region nuts="2">Lombardie</region></placeName></affiliation></author><author><name sortKey="Dicuonzo, Giordano" sort="Dicuonzo, Giordano" uniqKey="Dicuonzo G" first="Giordano" last="Dicuonzo">Giordano Dicuonzo</name><affiliation wicri:level="3"><nlm:affiliation>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Angeletti, Silvia" sort="Angeletti, Silvia" uniqKey="Angeletti S" first="Silvia" last="Angeletti">Silvia Angeletti</name><affiliation wicri:level="3"><nlm:affiliation>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Ciotti, Marco" sort="Ciotti, Marco" uniqKey="Ciotti M" first="Marco" last="Ciotti">Marco Ciotti</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Molecular Virology, Tor Vergata Foundation Hospital, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Laboratory of Molecular Virology, Tor Vergata Foundation Hospital, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Zehender, Gianguglielmo" sort="Zehender, Gianguglielmo" uniqKey="Zehender G" first="Gianguglielmo" last="Zehender">Gianguglielmo Zehender</name><affiliation wicri:level="3"><nlm:affiliation>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan</wicri:regionArea><placeName><settlement type="city">Milan</settlement><region nuts="2">Lombardie</region></placeName></affiliation></author><author><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><affiliation wicri:level="3"><nlm:affiliation>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy; Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy; Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author></analytic><series><title level="j">Journal of global infectious diseases</title><idno type="ISSN">0974-777X</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Human immunodeficiency virus type 2 (HIV-2) infections are mainly restricted to West Africa; however, in the recent years, the prevalence of HIV-2 is a growing concern in some European countries and the Southwestern region of India. Despite the presence of different HIV-2 groups, only A and B Groups have established human-to-human transmission chains.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">27621561</PMID><DateCreated><Year>2016</Year><Month>09</Month><Day>13</Day></DateCreated><DateCompleted><Year>2016</Year><Month>09</Month><Day>13</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>20</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0974-777X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>3</Issue><PubDate><MedlineDate>2016 Jul-Sep</MedlineDate></PubDate></JournalIssue><Title>Journal of global infectious diseases</Title><ISOAbbreviation>J Glob Infect Dis</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B.</ArticleTitle><Pagination><MedlinePgn>108-14</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.4103/0974-777X.188592</ELocationID><Abstract><AbstractText Label="CONTEXT" NlmCategory="BACKGROUND">Human immunodeficiency virus type 2 (HIV-2) infections are mainly restricted to West Africa; however, in the recent years, the prevalence of HIV-2 is a growing concern in some European countries and the Southwestern region of India. Despite the presence of different HIV-2 groups, only A and B Groups have established human-to-human transmission chains.</AbstractText><AbstractText Label="AIMS" NlmCategory="OBJECTIVE">This work aimed to evaluate the phylogeographic inference of HIV-2 Group B worldwide to estimate their data of origin and the population dynamics.</AbstractText><AbstractText Label="MATERIALS AND METHODS" NlmCategory="METHODS">The evolutionary rates, the demographic history for HIV-2 Group B dataset, and the phylogeographic analysis were estimated using a Bayesian approach. The viral gene flow analysis was used to count viral gene out/in flow among different locations.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The root of the Bayesian maximum clade credibility tree of HIV-2 Group B dated back to 1957. The demographic history of HIV-2 Group B showed that the epidemic remained constant up to 1970 when started an exponential growth. From 1985 to early 2000s, the epidemic reached a plateau, and then it was characterized by two bottlenecks and a new plateau at the end of 2000s. Phylogeographic reconstruction showed that the most probable location for the root of the tree was Ghana. Regarding the viral gene flow of HIV-2 Group B, the only observed viral gene flow was from Africa to France, Belgium, and Luxembourg.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The study gives insights into the origin, history, and phylogeography of HIV-2 Group B epidemic. The growing number of infections of HIV-2 worldwide indicates the need for strengthening surveillance.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cella</LastName><ForeName>Eleonora</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy; Department of Public Health and Infectious Diseases, Sapienza University of Rome, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lo Presti</LastName><ForeName>Alessandra</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giovanetti</LastName><ForeName>Marta</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy; Department of Biology, General Pathology Laboratory, University of Rome Tor Vergata, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Veo</LastName><ForeName>Carla</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lai</LastName><ForeName>Alessia</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dicuonzo</LastName><ForeName>Giordano</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Angeletti</LastName><ForeName>Silvia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ciotti</LastName><ForeName>Marco</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratory of Molecular Virology, Tor Vergata Foundation Hospital, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zehender</LastName><ForeName>Gianguglielmo</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ciccozzi</LastName><ForeName>Massimo</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy; Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome, Italy.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>India</Country><MedlineTA>J Glob Infect Dis</MedlineTA><NlmUniqueID>101521436</NlmUniqueID><ISSNLinking>0974-777X</ISSNLinking></MedlineJournalInfo><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>AIDS Res Hum Retroviruses. 2011 Dec;27(12):1333-5</RefSource><PMID Version="1">21453133</PMID></CommentsCorrections><CommentsCorrections 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Source="NLM">PMC4997794</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Evolution</Keyword><Keyword MajorTopicYN="N">Group B</Keyword><Keyword MajorTopicYN="N">human immunodeficiency virus type 2</Keyword><Keyword MajorTopicYN="N">phylogeny</Keyword><Keyword MajorTopicYN="N">phylogeographic analysis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>9</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>9</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>9</Month><Day>14</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27621561</ArticleId><ArticleId IdType="doi">10.4103/0974-777X.188592</ArticleId><ArticleId IdType="pii">JGID-8-108</ArticleId><ArticleId IdType="pmc">PMC4997794</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Italie</li></country><region><li>Latium</li><li>Lombardie</li></region><settlement><li>Milan</li><li>Rome</li></settlement></list><tree><country name="Italie"><region name="Latium"><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name></region><name sortKey="Angeletti, Silvia" sort="Angeletti, Silvia" uniqKey="Angeletti S" first="Silvia" last="Angeletti">Silvia Angeletti</name><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><name sortKey="Ciotti, Marco" sort="Ciotti, Marco" uniqKey="Ciotti M" first="Marco" last="Ciotti">Marco Ciotti</name><name sortKey="Dicuonzo, Giordano" sort="Dicuonzo, Giordano" uniqKey="Dicuonzo G" first="Giordano" last="Dicuonzo">Giordano Dicuonzo</name><name sortKey="Giovanetti, Marta" sort="Giovanetti, Marta" uniqKey="Giovanetti M" first="Marta" last="Giovanetti">Marta Giovanetti</name><name sortKey="Lai, Alessia" sort="Lai, Alessia" uniqKey="Lai A" first="Alessia" last="Lai">Alessia Lai</name><name sortKey="Lo Presti, Alessandra" sort="Lo Presti, Alessandra" uniqKey="Lo Presti A" first="Alessandra" last="Lo Presti">Alessandra Lo Presti</name><name sortKey="Veo, Carla" sort="Veo, Carla" uniqKey="Veo C" first="Carla" last="Veo">Carla Veo</name><name sortKey="Zehender, Gianguglielmo" sort="Zehender, Gianguglielmo" uniqKey="Zehender G" first="Gianguglielmo" last="Zehender">Gianguglielmo Zehender</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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