Disparate distribution of hepatitis B virus genotypes in four sub-Saharan African countries.
Identifieur interne : 000423 ( PubMed/Checkpoint ); précédent : 000422; suivant : 000424Disparate distribution of hepatitis B virus genotypes in four sub-Saharan African countries.
Auteurs : Joseph C. Forbi [États-Unis] ; Yousr Ben-Ayed ; Guo-Liang Xia ; Gilberto Vaughan ; Jan Drobeniuc ; William M. Switzer ; Yury E. KhudyakovSource :
- Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology [ 1873-5967 ] ; 2013.
Descripteurs français
- KwdFr :
- ADN viral (), ADN viral (génétique), Afrique subsaharienne (épidémiologie), Analyse de regroupements, Analyse de séquence d'ADN, Antigènes de surface du virus de l'hépatite B (génétique), Données de séquences moléculaires, Femelle, Grossesse, Génotype, Humains, Hépatite B (virologie), Hépatite B (épidémiologie), Mâle, Phylogéographie, Prévalence, Variation génétique, Virus de l'hépatite B (), Virus de l'hépatite B (génétique), Virus de l'hépatite B (isolement et purification), Épidémiologie moléculaire.
- MESH :
- génétique : ADN viral, Antigènes de surface du virus de l'hépatite B, Virus de l'hépatite B.
- isolement et purification : Virus de l'hépatite B.
- virologie : Hépatite B.
- épidémiologie : Afrique subsaharienne, Hépatite B.
- ADN viral, Analyse de regroupements, Analyse de séquence d'ADN, Données de séquences moléculaires, Femelle, Grossesse, Génotype, Humains, Mâle, Phylogéographie, Prévalence, Variation génétique, Virus de l'hépatite B, Épidémiologie moléculaire.
English descriptors
- KwdEn :
- Africa South of the Sahara (epidemiology), Cluster Analysis, DNA, Viral (chemistry), DNA, Viral (genetics), Female, Genetic Variation, Genotype, Hepatitis B (epidemiology), Hepatitis B (virology), Hepatitis B Surface Antigens (genetics), Hepatitis B virus (classification), Hepatitis B virus (genetics), Hepatitis B virus (isolation & purification), Humans, Male, Molecular Epidemiology, Molecular Sequence Data, Phylogeography, Pregnancy, Prevalence, Sequence Analysis, DNA.
- MESH :
- chemical , chemistry : DNA, Viral.
- geographic , epidemiology : Africa South of the Sahara.
- chemical , genetics : DNA, Viral, Hepatitis B Surface Antigens.
- classification : Hepatitis B virus.
- epidemiology : Hepatitis B.
- genetics : Hepatitis B virus.
- isolation & purification : Hepatitis B virus.
- virology : Hepatitis B.
- Cluster Analysis, Female, Genetic Variation, Genotype, Humans, Male, Molecular Epidemiology, Molecular Sequence Data, Phylogeography, Pregnancy, Prevalence, Sequence Analysis, DNA.
Abstract
Hepatitis B virus (HBV) places a substantial health burden on Africa. Here, we investigated genetic diversity of HBV variants circulating in 4 countries of sub-Saharan Africa using archived samples. In total, 1492 plasma samples were tested from HIV-infected individuals and pregnant women, among which 143 (9.6%) were PCR-positive for HBV DNA (Côte d'Ivoire, 70/608 [11.5%]; Ghana, 13/444 [2.9%]; Cameroon, 33/303 [10.9%]; and Uganda, 27/137 [19.7%]).
DOI: 10.1016/j.jcv.2013.06.028
PubMed: 23871163
Affiliations:
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pubmed:23871163Le document en format XML
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Here, we investigated genetic diversity of HBV variants circulating in 4 countries of sub-Saharan Africa using archived samples. In total, 1492 plasma samples were tested from HIV-infected individuals and pregnant women, among which 143 (9.6%) were PCR-positive for HBV DNA (Côte d'Ivoire, 70/608 [11.5%]; Ghana, 13/444 [2.9%]; Cameroon, 33/303 [10.9%]; and Uganda, 27/137 [19.7%]).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23871163</PMID><DateCreated><Year>2013</Year><Month>08</Month><Day>12</Day></DateCreated><DateCompleted><Year>2014</Year><Month>03</Month><Day>03</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>20</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-5967</ISSN><JournalIssue CitedMedium="Internet"><Volume>58</Volume><Issue>1</Issue><PubDate><Year>2013</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</Title><ISOAbbreviation>J. Clin. Virol.</ISOAbbreviation></Journal><ArticleTitle>Disparate distribution of hepatitis B virus genotypes in four sub-Saharan African countries.</ArticleTitle><Pagination><MedlinePgn>59-66</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.jcv.2013.06.028</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1386-6532(13)00260-6</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Hepatitis B virus (HBV) places a substantial health burden on Africa. Here, we investigated genetic diversity of HBV variants circulating in 4 countries of sub-Saharan Africa using archived samples. In total, 1492 plasma samples were tested from HIV-infected individuals and pregnant women, among which 143 (9.6%) were PCR-positive for HBV DNA (Côte d'Ivoire, 70/608 [11.5%]; Ghana, 13/444 [2.9%]; Cameroon, 33/303 [10.9%]; and Uganda, 27/137 [19.7%]).</AbstractText><AbstractText Label="STUDY DESIGN/RESULTS" NlmCategory="RESULTS">Phylogenetic analysis of the S-gene sequences identified HBV genotypes E (HBV/E, n=96) and A (HBV/A, n=47) distributed as follows: 87% of HBV/E and 13% of HBV/A in Côte d'Ivoire; 100% of HBV/E in Ghana; 67% of HBV/E and 33% of HBV/A in Cameroon; and 100% of HBV/A in Uganda. The average and maximal nucleotide distances among HBV/E sequences were 1.9% and 6.4%, respectively, suggesting a greater genetic diversity for this genotype than previously reported (p<0.001). HBV/A strains were classified into subgenotypes HBV/A1, HBV/A2 and HBV/A3. In Uganda, 93% of HBV/A strains belonged to HBV/A1 whereas HBV/A3 was the only subgenotype of HBV/A found in Cameroon. In Côte d'Ivoire, HBV/A strains were classified as HBV/A1 (11.1%), HBV/A2 (33.3%) and HBV/A3 (55.6%). Phylogeographic analysis of the sequences available from Africa supported earlier suggestions on the origin of HBV/A1, HBV/A2 and HBV/A3 in East, South and West/Central Africa, respectively. Using predicted amino acid sequences, hepatitis B surface antigen (HBsAg) was classified into serotype ayw4 in 93% of HBV/E strains and adw2 in 68% of HBV/A strains. Also, 7.7% of the sequences carried substitutions in HBsAg associated with immune escape.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The observations of pan-African and global dissemination of HBV/A1 and HBV/A2, and the circulation of HBV/E and HBV/A3 almost exclusively in West and Central Africa suggest a more recent increase in prevalence in Africa of HBV/E and HBV/A3 compared to HBV/A1 and HBV/A2. The broad genetic heterogeneity of HBsAg detected here may impact the efficacy of prevention and control efforts in sub-Saharan Africa.</AbstractText><CopyrightInformation>Published by Elsevier B.V.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Forbi</LastName><ForeName>Joseph C</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Molecular Epidemiology and Bioinformatics Laboratory, Division of Viral Hepatitis, National Center for HIV, Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, 1600 Clifton Rd NE, Atlanta, GA 30333, USA. JForbi@cdc.gov</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ben-Ayed</LastName><ForeName>Yousr</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Xia</LastName><ForeName>Guo-liang</ForeName><Initials>GL</Initials></Author><Author ValidYN="Y"><LastName>Vaughan</LastName><ForeName>Gilberto</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Drobeniuc</LastName><ForeName>Jan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Switzer</LastName><ForeName>William M</ForeName><Initials>WM</Initials></Author><Author ValidYN="Y"><LastName>Khudyakov</LastName><ForeName>Yury E</ForeName><Initials>YE</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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Version="1">20051475</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D017954" MajorTopicYN="N" Type="Geographic">Africa South of the Sahara</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006509" 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MajorTopicYN="N">Subgenotypes</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>03</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2013</Year><Month>05</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>06</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>7</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>7</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>3</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23871163</ArticleId><ArticleId IdType="pii">S1386-6532(13)00260-6</ArticleId><ArticleId 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Khudyakov</name><name sortKey="Switzer, William M" sort="Switzer, William M" uniqKey="Switzer W" first="William M" last="Switzer">William M. Switzer</name><name sortKey="Vaughan, Gilberto" sort="Vaughan, Gilberto" uniqKey="Vaughan G" first="Gilberto" last="Vaughan">Gilberto Vaughan</name><name sortKey="Xia, Guo Liang" sort="Xia, Guo Liang" uniqKey="Xia G" first="Guo-Liang" last="Xia">Guo-Liang Xia</name></noCountry><country name="États-Unis"><region name="Géorgie (États-Unis)"><name sortKey="Forbi, Joseph C" sort="Forbi, Joseph C" uniqKey="Forbi J" first="Joseph C" last="Forbi">Joseph C. Forbi</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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