Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B
Identifieur interne : 000165 ( Main/Exploration ); précédent : 000164; suivant : 000166Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B
Auteurs : Eleonora Cella ; Alessandra Lo Presti ; Marta Giovanetti ; Carla Veo ; Alessia Lai ; Giordano Dicuonzo ; Silvia Angeletti ; Marco Ciotti ; Gianguglielmo Zehender ; Massimo CiccozziSource :
- Journal of Global Infectious Diseases [ 0974-777X ] ; 2016.
Abstract
Human immunodeficiency virus type 2 (HIV-2) infections are mainly restricted to West Africa; however, in the recent years, the prevalence of HIV-2 is a growing concern in some European countries and the Southwestern region of India. Despite the presence of different HIV-2 groups, only A and B Groups have established human-to-human transmission chains.
This work aimed to evaluate the phylogeographic inference of HIV-2 Group B worldwide to estimate their data of origin and the population dynamics.
The evolutionary rates, the demographic history for HIV-2 Group B dataset, and the phylogeographic analysis were estimated using a Bayesian approach. The viral gene flow analysis was used to count viral gene out/in flow among different locations.
The root of the Bayesian maximum clade credibility tree of HIV-2 Group B dated back to 1957. The demographic history of HIV-2 Group B showed that the epidemic remained constant up to 1970 when started an exponential growth. From 1985 to early 2000s, the epidemic reached a plateau, and then it was characterized by two bottlenecks and a new plateau at the end of 2000s. Phylogeographic reconstruction showed that the most probable location for the root of the tree was Ghana. Regarding the viral gene flow of HIV-2 Group B, the only observed viral gene flow was from Africa to France, Belgium, and Luxembourg.
The study gives insights into the origin, history, and phylogeography of HIV-2 Group B epidemic. The growing number of infections of HIV-2 worldwide indicates the need for strengthening surveillance.
Url:
DOI: 10.4103/0974-777X.188592
PubMed: 27621561
PubMed Central: 4997794
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B</title><author><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff2"><italic>Department of Public Health and Infectious Diseases, Sapienza University of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Lo Presti, Alessandra" sort="Lo Presti, Alessandra" uniqKey="Lo Presti A" first="Alessandra" last="Lo Presti">Alessandra Lo Presti</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Giovanetti, Marta" sort="Giovanetti, Marta" uniqKey="Giovanetti M" first="Marta" last="Giovanetti">Marta Giovanetti</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff3"><italic>Department of Biology, General Pathology Laboratory, University of Rome Tor Vergata, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Veo, Carla" sort="Veo, Carla" uniqKey="Veo C" first="Carla" last="Veo">Carla Veo</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Lai, Alessia" sort="Lai, Alessia" uniqKey="Lai A" first="Alessia" last="Lai">Alessia Lai</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Dicuonzo, Giordano" sort="Dicuonzo, Giordano" uniqKey="Dicuonzo G" first="Giordano" last="Dicuonzo">Giordano Dicuonzo</name><affiliation><nlm:aff id="aff5"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Angeletti, Silvia" sort="Angeletti, Silvia" uniqKey="Angeletti S" first="Silvia" last="Angeletti">Silvia Angeletti</name><affiliation><nlm:aff id="aff5"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Ciotti, Marco" sort="Ciotti, Marco" uniqKey="Ciotti M" first="Marco" last="Ciotti">Marco Ciotti</name><affiliation><nlm:aff id="aff6"><italic>Laboratory of Molecular Virology, Tor Vergata Foundation Hospital, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Zehender, Gianguglielmo" sort="Zehender, Gianguglielmo" uniqKey="Zehender G" first="Gianguglielmo" last="Zehender">Gianguglielmo Zehender</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff7"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome, Italy</italic></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27621561</idno><idno type="pmc">4997794</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997794</idno><idno type="RBID">PMC:4997794</idno><idno type="doi">10.4103/0974-777X.188592</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000457</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000457</idno><idno type="wicri:Area/Pmc/Curation">000456</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000456</idno><idno type="wicri:Area/Pmc/Checkpoint">000078</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000078</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000683</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000683</idno><idno type="wicri:Area/PubMed/Curation">000683</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000683</idno><idno type="wicri:Area/PubMed/Checkpoint">000683</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000683</idno><idno type="wicri:Area/Ncbi/Merge">000A31</idno><idno type="wicri:Area/Ncbi/Curation">000A31</idno><idno type="wicri:Area/Ncbi/Checkpoint">000A31</idno><idno type="wicri:doubleKey">0974-777X:2016:Cella E:phylogenetic:analysis:of</idno><idno type="wicri:Area/Main/Merge">000165</idno><idno type="wicri:Area/Main/Curation">000165</idno><idno type="wicri:Area/Main/Exploration">000165</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B</title><author><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff2"><italic>Department of Public Health and Infectious Diseases, Sapienza University of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Lo Presti, Alessandra" sort="Lo Presti, Alessandra" uniqKey="Lo Presti A" first="Alessandra" last="Lo Presti">Alessandra Lo Presti</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Giovanetti, Marta" sort="Giovanetti, Marta" uniqKey="Giovanetti M" first="Marta" last="Giovanetti">Marta Giovanetti</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff3"><italic>Department of Biology, General Pathology Laboratory, University of Rome Tor Vergata, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Veo, Carla" sort="Veo, Carla" uniqKey="Veo C" first="Carla" last="Veo">Carla Veo</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Lai, Alessia" sort="Lai, Alessia" uniqKey="Lai A" first="Alessia" last="Lai">Alessia Lai</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Dicuonzo, Giordano" sort="Dicuonzo, Giordano" uniqKey="Dicuonzo G" first="Giordano" last="Dicuonzo">Giordano Dicuonzo</name><affiliation><nlm:aff id="aff5"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Angeletti, Silvia" sort="Angeletti, Silvia" uniqKey="Angeletti S" first="Silvia" last="Angeletti">Silvia Angeletti</name><affiliation><nlm:aff id="aff5"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico of Rome, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Ciotti, Marco" sort="Ciotti, Marco" uniqKey="Ciotti M" first="Marco" last="Ciotti">Marco Ciotti</name><affiliation><nlm:aff id="aff6"><italic>Laboratory of Molecular Virology, Tor Vergata Foundation Hospital, Rome, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Zehender, Gianguglielmo" sort="Zehender, Gianguglielmo" uniqKey="Zehender G" first="Gianguglielmo" last="Zehender">Gianguglielmo Zehender</name><affiliation><nlm:aff id="aff4"><italic>Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan, Italy</italic></nlm:aff></affiliation></author><author><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><affiliation><nlm:aff id="aff1"><italic>Department of Infectious, Parasitic and Immunomediated Diseases, National Institute of Health, Rome, Italy</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff7"><italic>Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome, Italy</italic></nlm:aff></affiliation></author></analytic><series><title level="j">Journal of Global Infectious Diseases</title><idno type="ISSN">0974-777X</idno><idno type="eISSN">0974-8245</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec id="st1"><title>Context:</title><p>Human immunodeficiency virus type 2 (HIV-2) infections are mainly restricted to West Africa; however, in the recent years, the prevalence of HIV-2 is a growing concern in some European countries and the Southwestern region of India. Despite the presence of different HIV-2 groups, only A and B Groups have established human-to-human transmission chains.</p></sec><sec id="st2"><title>Aims:</title><p>This work aimed to evaluate the phylogeographic inference of HIV-2 Group B worldwide to estimate their data of origin and the population dynamics.</p></sec><sec id="st3"><title>Materials and Methods:</title><p>The evolutionary rates, the demographic history for HIV-2 Group B dataset, and the phylogeographic analysis were estimated using a Bayesian approach. The viral gene flow analysis was used to count viral gene out/in flow among different locations.</p></sec><sec id="st4"><title>Results:</title><p>The root of the Bayesian maximum clade credibility tree of HIV-2 Group B dated back to 1957. The demographic history of HIV-2 Group B showed that the epidemic remained constant up to 1970 when started an exponential growth. From 1985 to early 2000s, the epidemic reached a plateau, and then it was characterized by two bottlenecks and a new plateau at the end of 2000s. Phylogeographic reconstruction showed that the most probable location for the root of the tree was Ghana. Regarding the viral gene flow of HIV-2 Group B, the only observed viral gene flow was from Africa to France, Belgium, and Luxembourg.</p></sec><sec id="st5"><title>Conclusions:</title><p>The study gives insights into the origin, history, and phylogeography of HIV-2 Group B epidemic. 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Lot</name></author><author><name sortKey="Pinget, R" uniqKey="Pinget R">R Pinget</name></author><author><name sortKey="David, D" uniqKey="David D">D David</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Poulsen, Ag" uniqKey="Poulsen A">AG Poulsen</name></author><author><name sortKey="Kvinesdal, B" uniqKey="Kvinesdal B">B Kvinesdal</name></author><author><name sortKey="Aaby, P" uniqKey="Aaby P">P Aaby</name></author><author><name sortKey="M Lbak, K" uniqKey="M Lbak K">K Mølbak</name></author><author><name sortKey="Frederiksen, K" uniqKey="Frederiksen K">K Frederiksen</name></author><author><name sortKey="Dias, F" uniqKey="Dias F">F Dias</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Piedade, J" uniqKey="Piedade J">J Piedade</name></author><author><name sortKey="Venenno, T" uniqKey="Venenno T">T Venenno</name></author><author><name sortKey="Prieto, E" uniqKey="Prieto E">E Prieto</name></author><author><name sortKey="Albuquerque, R" uniqKey="Albuquerque R">R Albuquerque</name></author><author><name sortKey="Esteves, A" uniqKey="Esteves A">A Esteves</name></author><author><name sortKey="Parreira, R" uniqKey="Parreira R">R Parreira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pepin, J" uniqKey="Pepin J">J Pépin</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Angeletti, Silvia" sort="Angeletti, Silvia" uniqKey="Angeletti S" first="Silvia" last="Angeletti">Silvia Angeletti</name><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><name sortKey="Ciotti, Marco" sort="Ciotti, Marco" uniqKey="Ciotti M" first="Marco" last="Ciotti">Marco Ciotti</name><name sortKey="Dicuonzo, Giordano" sort="Dicuonzo, Giordano" uniqKey="Dicuonzo G" first="Giordano" last="Dicuonzo">Giordano Dicuonzo</name><name sortKey="Giovanetti, Marta" sort="Giovanetti, Marta" uniqKey="Giovanetti M" first="Marta" last="Giovanetti">Marta Giovanetti</name><name sortKey="Lai, Alessia" sort="Lai, Alessia" uniqKey="Lai A" first="Alessia" last="Lai">Alessia Lai</name><name sortKey="Lo Presti, Alessandra" sort="Lo Presti, Alessandra" uniqKey="Lo Presti A" first="Alessandra" last="Lo Presti">Alessandra Lo Presti</name><name sortKey="Veo, Carla" sort="Veo, Carla" uniqKey="Veo C" first="Carla" last="Veo">Carla Veo</name><name sortKey="Zehender, Gianguglielmo" sort="Zehender, Gianguglielmo" uniqKey="Zehender G" first="Gianguglielmo" last="Zehender">Gianguglielmo Zehender</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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