Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Identifieur interne : 000059 ( Main/Corpus ); précédent : 000058; suivant : 000060Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Auteurs : Claude Murat ; Thibaut Payen ; Benjamin Noel ; Alan Kuo ; Emmanuelle Morin ; Juan Chen ; Annegret Kohler ; Krisztina Krizsán ; Raffaella Balestrini ; Corinne Da Silva ; Barbara Montanini ; Mathieu Hainaut ; Elisabetta Levati ; Kerrie W. Barry ; Beatrice Belfiori ; Nicolas Cichocki ; Alicia Clum ; Rhyan B. Dockter ; Laure Fauchery ; Julie Guy ; Mirco Iotti ; François Le Tacon ; Erika A. Lindquist ; Anna Lipzen ; Fabienne Malagnac ; Antonietta Mello ; Virginie Molinier ; Shingo Miyauchi ; Julie Poulain ; Claudia Riccioni ; Andrea Rubini ; Yaron Sitrit ; Richard Splivallo ; Stefanie Traeger ; Mei Wang ; Lucia Žif Ková ; Daniel Wipf ; Alessandra Zambonelli ; Francesco Paolocci ; Minou Nowrousian ; Simone Ottonello ; Petr Baldrian ; Joseph W. Spatafora ; Bernard Henrissat ; Laszlo G. Nagy ; Jean-Marc Aury ; Patrick Wincker ; Igor V. Grigoriev ; Paola Bonfante ; Francis M. MartinSource :
- Nature ecology & evolution [ 2397-334X ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : DNA, Fungal.
- genetics : Ascomycota, Mycorrhizae.
- physiology : Ascomycota, Mycorrhizae.
- Genome, Fungal, Life History Traits, Phylogeny, Sequence Analysis, DNA, Symbiosis.
Abstract
Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.
DOI: 10.1038/s41559-018-0710-4
PubMed: 30420746
Links to Exploration step
pubmed:30420746Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.</title><author><name sortKey="Murat, Claude" sort="Murat, Claude" uniqKey="Murat C" first="Claude" last="Murat">Claude Murat</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. claude.murat@inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Payen, Thibaut" sort="Payen, Thibaut" uniqKey="Payen T" first="Thibaut" last="Payen">Thibaut Payen</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuo, Alan" sort="Kuo, Alan" uniqKey="Kuo A" first="Alan" last="Kuo">Alan Kuo</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Juan" sort="Chen, Juan" uniqKey="Chen J" first="Juan" last="Chen">Juan Chen</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Kohler, Annegret" sort="Kohler, Annegret" uniqKey="Kohler A" first="Annegret" last="Kohler">Annegret Kohler</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Krizsan, Krisztina" sort="Krizsan, Krisztina" uniqKey="Krizsan K" first="Krisztina" last="Krizsán">Krisztina Krizsán</name><affiliation><nlm:affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Balestrini, Raffaella" sort="Balestrini, Raffaella" uniqKey="Balestrini R" first="Raffaella" last="Balestrini">Raffaella Balestrini</name><affiliation><nlm:affiliation>National Research Council - Institute for Sustainable Plant Protection, Torino Unit, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Montanini, Barbara" sort="Montanini, Barbara" uniqKey="Montanini B" first="Barbara" last="Montanini">Barbara Montanini</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Hainaut, Mathieu" sort="Hainaut, Mathieu" uniqKey="Hainaut M" first="Mathieu" last="Hainaut">Mathieu Hainaut</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Levati, Elisabetta" sort="Levati, Elisabetta" uniqKey="Levati E" first="Elisabetta" last="Levati">Elisabetta Levati</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Belfiori, Beatrice" sort="Belfiori, Beatrice" uniqKey="Belfiori B" first="Beatrice" last="Belfiori">Beatrice Belfiori</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Cichocki, Nicolas" sort="Cichocki, Nicolas" uniqKey="Cichocki N" first="Nicolas" last="Cichocki">Nicolas Cichocki</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Clum, Alicia" sort="Clum, Alicia" uniqKey="Clum A" first="Alicia" last="Clum">Alicia Clum</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Dockter, Rhyan B" sort="Dockter, Rhyan B" uniqKey="Dockter R" first="Rhyan B" last="Dockter">Rhyan B. Dockter</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Fauchery, Laure" sort="Fauchery, Laure" uniqKey="Fauchery L" first="Laure" last="Fauchery">Laure Fauchery</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Guy, Julie" sort="Guy, Julie" uniqKey="Guy J" first="Julie" last="Guy">Julie Guy</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Iotti, Mirco" sort="Iotti, Mirco" uniqKey="Iotti M" first="Mirco" last="Iotti">Mirco Iotti</name><affiliation><nlm:affiliation>Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Le Tacon, Francois" sort="Le Tacon, Francois" uniqKey="Le Tacon F" first="François" last="Le Tacon">François Le Tacon</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lindquist, Erika A" sort="Lindquist, Erika A" uniqKey="Lindquist E" first="Erika A" last="Lindquist">Erika A. Lindquist</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lipzen, Anna" sort="Lipzen, Anna" uniqKey="Lipzen A" first="Anna" last="Lipzen">Anna Lipzen</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Malagnac, Fabienne" sort="Malagnac, Fabienne" uniqKey="Malagnac F" first="Fabienne" last="Malagnac">Fabienne Malagnac</name><affiliation><nlm:affiliation>Institute for Integrative Biology of the Cell, CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette cedex, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mello, Antonietta" sort="Mello, Antonietta" uniqKey="Mello A" first="Antonietta" last="Mello">Antonietta Mello</name><affiliation><nlm:affiliation>National Research Council - Institute for Sustainable Plant Protection, Torino Unit, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Molinier, Virginie" sort="Molinier, Virginie" uniqKey="Molinier V" first="Virginie" last="Molinier">Virginie Molinier</name><affiliation><nlm:affiliation>UMR 1347 Agroécologie AgroSup/INRA/uB, Pôle IPM - ERL CNRS 6300, Dijon, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>UMR 5175 CEFE, CNRS, Université de Montpellier, Université Paul Valéry Montpellier, EPHE, INSERM, Campus CNRS, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Miyauchi, Shingo" sort="Miyauchi, Shingo" uniqKey="Miyauchi S" first="Shingo" last="Miyauchi">Shingo Miyauchi</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Poulain, Julie" sort="Poulain, Julie" uniqKey="Poulain J" first="Julie" last="Poulain">Julie Poulain</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Riccioni, Claudia" sort="Riccioni, Claudia" uniqKey="Riccioni C" first="Claudia" last="Riccioni">Claudia Riccioni</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Rubini, Andrea" sort="Rubini, Andrea" uniqKey="Rubini A" first="Andrea" last="Rubini">Andrea Rubini</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Sitrit, Yaron" sort="Sitrit, Yaron" uniqKey="Sitrit Y" first="Yaron" last="Sitrit">Yaron Sitrit</name><affiliation><nlm:affiliation>The Jacob Blaustein Institutes for Desert Research, Bergman Campus, Ben-Gurion University of The Negev, Beer-Sheva, Israel.</nlm:affiliation></affiliation></author><author><name sortKey="Splivallo, Richard" sort="Splivallo, Richard" uniqKey="Splivallo R" first="Richard" last="Splivallo">Richard Splivallo</name><affiliation><nlm:affiliation>Institute of Molecular Biosciences, Goethe University Frankfurt, Frankfurt am Main, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Traeger, Stefanie" sort="Traeger, Stefanie" uniqKey="Traeger S" first="Stefanie" last="Traeger">Stefanie Traeger</name><affiliation><nlm:affiliation>Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Mei" sort="Wang, Mei" uniqKey="Wang M" first="Mei" last="Wang">Mei Wang</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Zif Kova, Lucia" sort="Zif Kova, Lucia" uniqKey="Zif Kova L" first="Lucia" last="Žif Ková">Lucia Žif Ková</name><affiliation><nlm:affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Praha, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Wipf, Daniel" sort="Wipf, Daniel" uniqKey="Wipf D" first="Daniel" last="Wipf">Daniel Wipf</name><affiliation><nlm:affiliation>UMR 1347 Agroécologie AgroSup/INRA/uB, Pôle IPM - ERL CNRS 6300, Dijon, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zambonelli, Alessandra" sort="Zambonelli, Alessandra" uniqKey="Zambonelli A" first="Alessandra" last="Zambonelli">Alessandra Zambonelli</name><affiliation><nlm:affiliation>Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Paolocci, Francesco" sort="Paolocci, Francesco" uniqKey="Paolocci F" first="Francesco" last="Paolocci">Francesco Paolocci</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Nowrousian, Minou" sort="Nowrousian, Minou" uniqKey="Nowrousian M" first="Minou" last="Nowrousian">Minou Nowrousian</name><affiliation><nlm:affiliation>Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Ottonello, Simone" sort="Ottonello, Simone" uniqKey="Ottonello S" first="Simone" last="Ottonello">Simone Ottonello</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Baldrian, Petr" sort="Baldrian, Petr" uniqKey="Baldrian P" first="Petr" last="Baldrian">Petr Baldrian</name><affiliation><nlm:affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Praha, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Spatafora, Joseph W" sort="Spatafora, Joseph W" uniqKey="Spatafora J" first="Joseph W" last="Spatafora">Joseph W. Spatafora</name><affiliation><nlm:affiliation>Department Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>UMR 7257, Centre National de la Recherche Scientifique, Marseille, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Nagy, Laszlo G" sort="Nagy, Laszlo G" uniqKey="Nagy L" first="Laszlo G" last="Nagy">Laszlo G. Nagy</name><affiliation><nlm:affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Bonfante, Paola" sort="Bonfante, Paola" uniqKey="Bonfante P" first="Paola" last="Bonfante">Paola Bonfante</name><affiliation><nlm:affiliation>Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis M" sort="Martin, Francis M" uniqKey="Martin F" first="Francis M" last="Martin">Francis M. Martin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. francis.martin@inra.fr.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institute of Microbiology, Beijing Forestry University, Beijing, China. francis.martin@inra.fr.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:30420746</idno><idno type="pmid">30420746</idno><idno type="doi">10.1038/s41559-018-0710-4</idno><idno type="wicri:Area/Main/Corpus">000059</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000059</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.</title><author><name sortKey="Murat, Claude" sort="Murat, Claude" uniqKey="Murat C" first="Claude" last="Murat">Claude Murat</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. claude.murat@inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Payen, Thibaut" sort="Payen, Thibaut" uniqKey="Payen T" first="Thibaut" last="Payen">Thibaut Payen</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuo, Alan" sort="Kuo, Alan" uniqKey="Kuo A" first="Alan" last="Kuo">Alan Kuo</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Juan" sort="Chen, Juan" uniqKey="Chen J" first="Juan" last="Chen">Juan Chen</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Kohler, Annegret" sort="Kohler, Annegret" uniqKey="Kohler A" first="Annegret" last="Kohler">Annegret Kohler</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Krizsan, Krisztina" sort="Krizsan, Krisztina" uniqKey="Krizsan K" first="Krisztina" last="Krizsán">Krisztina Krizsán</name><affiliation><nlm:affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Balestrini, Raffaella" sort="Balestrini, Raffaella" uniqKey="Balestrini R" first="Raffaella" last="Balestrini">Raffaella Balestrini</name><affiliation><nlm:affiliation>National Research Council - Institute for Sustainable Plant Protection, Torino Unit, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Montanini, Barbara" sort="Montanini, Barbara" uniqKey="Montanini B" first="Barbara" last="Montanini">Barbara Montanini</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Hainaut, Mathieu" sort="Hainaut, Mathieu" uniqKey="Hainaut M" first="Mathieu" last="Hainaut">Mathieu Hainaut</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Levati, Elisabetta" sort="Levati, Elisabetta" uniqKey="Levati E" first="Elisabetta" last="Levati">Elisabetta Levati</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Belfiori, Beatrice" sort="Belfiori, Beatrice" uniqKey="Belfiori B" first="Beatrice" last="Belfiori">Beatrice Belfiori</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Cichocki, Nicolas" sort="Cichocki, Nicolas" uniqKey="Cichocki N" first="Nicolas" last="Cichocki">Nicolas Cichocki</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Clum, Alicia" sort="Clum, Alicia" uniqKey="Clum A" first="Alicia" last="Clum">Alicia Clum</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Dockter, Rhyan B" sort="Dockter, Rhyan B" uniqKey="Dockter R" first="Rhyan B" last="Dockter">Rhyan B. Dockter</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Fauchery, Laure" sort="Fauchery, Laure" uniqKey="Fauchery L" first="Laure" last="Fauchery">Laure Fauchery</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Guy, Julie" sort="Guy, Julie" uniqKey="Guy J" first="Julie" last="Guy">Julie Guy</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Iotti, Mirco" sort="Iotti, Mirco" uniqKey="Iotti M" first="Mirco" last="Iotti">Mirco Iotti</name><affiliation><nlm:affiliation>Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Le Tacon, Francois" sort="Le Tacon, Francois" uniqKey="Le Tacon F" first="François" last="Le Tacon">François Le Tacon</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Lindquist, Erika A" sort="Lindquist, Erika A" uniqKey="Lindquist E" first="Erika A" last="Lindquist">Erika A. Lindquist</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lipzen, Anna" sort="Lipzen, Anna" uniqKey="Lipzen A" first="Anna" last="Lipzen">Anna Lipzen</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Malagnac, Fabienne" sort="Malagnac, Fabienne" uniqKey="Malagnac F" first="Fabienne" last="Malagnac">Fabienne Malagnac</name><affiliation><nlm:affiliation>Institute for Integrative Biology of the Cell, CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette cedex, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mello, Antonietta" sort="Mello, Antonietta" uniqKey="Mello A" first="Antonietta" last="Mello">Antonietta Mello</name><affiliation><nlm:affiliation>National Research Council - Institute for Sustainable Plant Protection, Torino Unit, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Molinier, Virginie" sort="Molinier, Virginie" uniqKey="Molinier V" first="Virginie" last="Molinier">Virginie Molinier</name><affiliation><nlm:affiliation>UMR 1347 Agroécologie AgroSup/INRA/uB, Pôle IPM - ERL CNRS 6300, Dijon, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>UMR 5175 CEFE, CNRS, Université de Montpellier, Université Paul Valéry Montpellier, EPHE, INSERM, Campus CNRS, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Miyauchi, Shingo" sort="Miyauchi, Shingo" uniqKey="Miyauchi S" first="Shingo" last="Miyauchi">Shingo Miyauchi</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Poulain, Julie" sort="Poulain, Julie" uniqKey="Poulain J" first="Julie" last="Poulain">Julie Poulain</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Riccioni, Claudia" sort="Riccioni, Claudia" uniqKey="Riccioni C" first="Claudia" last="Riccioni">Claudia Riccioni</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Rubini, Andrea" sort="Rubini, Andrea" uniqKey="Rubini A" first="Andrea" last="Rubini">Andrea Rubini</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Sitrit, Yaron" sort="Sitrit, Yaron" uniqKey="Sitrit Y" first="Yaron" last="Sitrit">Yaron Sitrit</name><affiliation><nlm:affiliation>The Jacob Blaustein Institutes for Desert Research, Bergman Campus, Ben-Gurion University of The Negev, Beer-Sheva, Israel.</nlm:affiliation></affiliation></author><author><name sortKey="Splivallo, Richard" sort="Splivallo, Richard" uniqKey="Splivallo R" first="Richard" last="Splivallo">Richard Splivallo</name><affiliation><nlm:affiliation>Institute of Molecular Biosciences, Goethe University Frankfurt, Frankfurt am Main, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Traeger, Stefanie" sort="Traeger, Stefanie" uniqKey="Traeger S" first="Stefanie" last="Traeger">Stefanie Traeger</name><affiliation><nlm:affiliation>Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Mei" sort="Wang, Mei" uniqKey="Wang M" first="Mei" last="Wang">Mei Wang</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Zif Kova, Lucia" sort="Zif Kova, Lucia" uniqKey="Zif Kova L" first="Lucia" last="Žif Ková">Lucia Žif Ková</name><affiliation><nlm:affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Praha, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Wipf, Daniel" sort="Wipf, Daniel" uniqKey="Wipf D" first="Daniel" last="Wipf">Daniel Wipf</name><affiliation><nlm:affiliation>UMR 1347 Agroécologie AgroSup/INRA/uB, Pôle IPM - ERL CNRS 6300, Dijon, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zambonelli, Alessandra" sort="Zambonelli, Alessandra" uniqKey="Zambonelli A" first="Alessandra" last="Zambonelli">Alessandra Zambonelli</name><affiliation><nlm:affiliation>Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Paolocci, Francesco" sort="Paolocci, Francesco" uniqKey="Paolocci F" first="Francesco" last="Paolocci">Francesco Paolocci</name><affiliation><nlm:affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Nowrousian, Minou" sort="Nowrousian, Minou" uniqKey="Nowrousian M" first="Minou" last="Nowrousian">Minou Nowrousian</name><affiliation><nlm:affiliation>Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Ottonello, Simone" sort="Ottonello, Simone" uniqKey="Ottonello S" first="Simone" last="Ottonello">Simone Ottonello</name><affiliation><nlm:affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Baldrian, Petr" sort="Baldrian, Petr" uniqKey="Baldrian P" first="Petr" last="Baldrian">Petr Baldrian</name><affiliation><nlm:affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Praha, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Spatafora, Joseph W" sort="Spatafora, Joseph W" uniqKey="Spatafora J" first="Joseph W" last="Spatafora">Joseph W. Spatafora</name><affiliation><nlm:affiliation>Department Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>UMR 7257, Centre National de la Recherche Scientifique, Marseille, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Nagy, Laszlo G" sort="Nagy, Laszlo G" uniqKey="Nagy L" first="Laszlo G" last="Nagy">Laszlo G. Nagy</name><affiliation><nlm:affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</nlm:affiliation></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Bonfante, Paola" sort="Bonfante, Paola" uniqKey="Bonfante P" first="Paola" last="Bonfante">Paola Bonfante</name><affiliation><nlm:affiliation>Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis M" sort="Martin, Francis M" uniqKey="Martin F" first="Francis M" last="Martin">Francis M. Martin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. francis.martin@inra.fr.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institute of Microbiology, Beijing Forestry University, Beijing, China. francis.martin@inra.fr.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Nature ecology & evolution</title><idno type="eISSN">2397-334X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (genetics)</term><term>Ascomycota (physiology)</term><term>DNA, Fungal (analysis)</term><term>Genome, Fungal (MeSH)</term><term>Life History Traits (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (physiology)</term><term>Phylogeny (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Ascomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genome, Fungal</term><term>Life History Traits</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30420746</PMID><DateCompleted><Year>2019</Year><Month>05</Month><Day>09</Day></DateCompleted><DateRevised><Year>2019</Year><Month>10</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2397-334X</ISSN><JournalIssue CitedMedium="Internet"><Volume>2</Volume><Issue>12</Issue><PubDate><Year>2018</Year><Month>12</Month></PubDate></JournalIssue><Title>Nature ecology & evolution</Title></Journal><ArticleTitle>Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.</ArticleTitle><Pagination><MedlinePgn>1956-1965</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41559-018-0710-4</ELocationID><Abstract><AbstractText>Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Murat</LastName><ForeName>Claude</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. claude.murat@inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Payen</LastName><ForeName>Thibaut</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Noel</LastName><ForeName>Benjamin</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kuo</LastName><ForeName>Alan</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morin</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-7268-972X</Identifier><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Juan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kohler</LastName><ForeName>Annegret</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Krizsán</LastName><ForeName>Krisztina</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Balestrini</LastName><ForeName>Raffaella</ForeName><Initials>R</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-7958-7681</Identifier><AffiliationInfo><Affiliation>National Research Council - Institute for Sustainable Plant Protection, Torino Unit, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Da Silva</LastName><ForeName>Corinne</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Montanini</LastName><ForeName>Barbara</ForeName><Initials>B</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5419-7975</Identifier><AffiliationInfo><Affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hainaut</LastName><ForeName>Mathieu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Levati</LastName><ForeName>Elisabetta</ForeName><Initials>E</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8125-638X</Identifier><AffiliationInfo><Affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barry</LastName><ForeName>Kerrie W</ForeName><Initials>KW</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Belfiori</LastName><ForeName>Beatrice</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cichocki</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Clum</LastName><ForeName>Alicia</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint 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ValidYN="Y"><LastName>Iotti</LastName><ForeName>Mirco</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-2705-0385</Identifier><AffiliationInfo><Affiliation>Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Le Tacon</LastName><ForeName>François</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lindquist</LastName><ForeName>Erika A</ForeName><Initials>EA</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-2249-7225</Identifier><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, 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ValidYN="Y"><LastName>Riccioni</LastName><ForeName>Claudia</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rubini</LastName><ForeName>Andrea</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>CNR-IBBR, Istituto di Bioscienze e Biorisorse, UOS di Perugia, Perugia, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sitrit</LastName><ForeName>Yaron</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Jacob Blaustein Institutes for Desert Research, Bergman Campus, Ben-Gurion University of The Negev, Beer-Sheva, Israel.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Splivallo</LastName><ForeName>Richard</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Institute of Molecular Biosciences, Goethe University Frankfurt, Frankfurt am Main, 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ValidYN="Y"><LastName>Ottonello</LastName><ForeName>Simone</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Chemical Life Sciences & Environmental Sustainability, Laboratory of Biochemistry and Molecular Biology, University of Parma, Parma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Baldrian</LastName><ForeName>Petr</ForeName><Initials>P</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-8983-2721</Identifier><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Praha, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Spatafora</LastName><ForeName>Joseph W</ForeName><Initials>JW</Initials><AffiliationInfo><Affiliation>Department Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Henrissat</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>UMR 7257, Centre National de la Recherche Scientifique, Marseille, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nagy</LastName><ForeName>Laszlo G</ForeName><Initials>LG</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-4102-8566</Identifier><AffiliationInfo><Affiliation>Synthetic and Systems Biology Unit, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aury</LastName><ForeName>Jean-Marc</ForeName><Initials>JM</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1718-3010</Identifier><AffiliationInfo><Affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wincker</LastName><ForeName>Patrick</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3136-8903</Identifier><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bonfante</LastName><ForeName>Paola</ForeName><Initials>P</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3576-8530</Identifier><AffiliationInfo><Affiliation>Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis M</ForeName><Initials>FM</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-4737-3715</Identifier><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France. francis.martin@inra.fr.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Microbiology, Beijing Forestry University, Beijing, China. francis.martin@inra.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Nat Ecol Evol</MedlineTA><NlmUniqueID>101698577</NlmUniqueID><ISSNLinking>2397-334X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000235" 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