Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation
Identifieur interne : 000F21 ( Main/Curation ); précédent : 000F20; suivant : 000F22Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation
Auteurs : Dimitar Hristovski [Slovénie] ; Andrej Kastrin [Slovénie] ; Borut Peterlin [Slovénie] ; C. Rindflesch [États-Unis]Source :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2010.
Abstract
Abstract: Although microarray experiments have great potential to support progress in biomedical research, results are not easy to interpret. Information about the functions and relations of relevant genes needs to be extracted from the vast biomedical literature. A potential solution is to use computerized text analysis methods. Our proposal enhances these methods with semantic relations. We describe an application that integrates such relations with microarray results and discuss its benefits in supporting enhanced access to the relevant literature for interpretation of results and novel hypotheses generation. The application is available at http://sembt.mf.uni-lj.si
Url:
DOI: 10.1007/978-3-642-13131-8_7
Links toward previous steps (curation, corpus...)
- to stream Main, to step Corpus: Pour aller vers cette notice dans l'étape Curation :001115
Links to Exploration step
ISTEX:FC61C703D43C762B3CFE3E3BCFC4A3F6727E56C9Curation
No country items
C. Rindflesch<affiliation><mods:affiliation>E-mail: tcr@nlm.nih.gov</mods:affiliation>
<wicri:noCountry code="no comma">E-mail: tcr@nlm.nih.gov</wicri:noCountry>
</affiliation>
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct:series"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation</title>
<author><name sortKey="Hristovski, Dimitar" sort="Hristovski, Dimitar" uniqKey="Hristovski D" first="Dimitar" last="Hristovski">Dimitar Hristovski</name>
<affiliation wicri:level="1"><mods:affiliation>Faculty of Medicine, Institute of Biomedical Informatics, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Faculty of Medicine, Institute of Biomedical Informatics, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: dimitar.hristovski@mf.uni-lj.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Kastrin, Andrej" sort="Kastrin, Andrej" uniqKey="Kastrin A" first="Andrej" last="Kastrin">Andrej Kastrin</name>
<affiliation wicri:level="1"><mods:affiliation>Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Institute of Medical Genetics, University Medical Centre, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: andrej.kastrin@guest.arnes.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Peterlin, Borut" sort="Peterlin, Borut" uniqKey="Peterlin B" first="Borut" last="Peterlin">Borut Peterlin</name>
<affiliation wicri:level="1"><mods:affiliation>Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Institute of Medical Genetics, University Medical Centre, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: borut.peterlin@guest.arnes.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Rindflesch, C" sort="Rindflesch, C" uniqKey="Rindflesch C" first="C." last="Rindflesch">C. Rindflesch</name>
<affiliation wicri:level="1"><mods:affiliation>National Library of Medicine, NIH, Bethesda, MD, USA</mods:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Library of Medicine, NIH, Bethesda, MD</wicri:regionArea>
</affiliation>
<affiliation><mods:affiliation>E-mail: tcr@nlm.nih.gov</mods:affiliation>
<wicri:noCountry code="no comma">E-mail: tcr@nlm.nih.gov</wicri:noCountry>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:FC61C703D43C762B3CFE3E3BCFC4A3F6727E56C9</idno>
<date when="2010" year="2010">2010</date>
<idno type="doi">10.1007/978-3-642-13131-8_7</idno>
<idno type="url">https://api.istex.fr/document/FC61C703D43C762B3CFE3E3BCFC4A3F6727E56C9/fulltext/pdf</idno>
<idno type="wicri:Area/Main/Corpus">001115</idno>
<idno type="wicri:Area/Main/Curation">000F21</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation</title>
<author><name sortKey="Hristovski, Dimitar" sort="Hristovski, Dimitar" uniqKey="Hristovski D" first="Dimitar" last="Hristovski">Dimitar Hristovski</name>
<affiliation wicri:level="1"><mods:affiliation>Faculty of Medicine, Institute of Biomedical Informatics, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Faculty of Medicine, Institute of Biomedical Informatics, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: dimitar.hristovski@mf.uni-lj.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Kastrin, Andrej" sort="Kastrin, Andrej" uniqKey="Kastrin A" first="Andrej" last="Kastrin">Andrej Kastrin</name>
<affiliation wicri:level="1"><mods:affiliation>Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Institute of Medical Genetics, University Medical Centre, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: andrej.kastrin@guest.arnes.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Peterlin, Borut" sort="Peterlin, Borut" uniqKey="Peterlin B" first="Borut" last="Peterlin">Borut Peterlin</name>
<affiliation wicri:level="1"><mods:affiliation>Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia</mods:affiliation>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea>Institute of Medical Genetics, University Medical Centre, Ljubljana</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><mods:affiliation>E-mail: borut.peterlin@guest.arnes.si</mods:affiliation>
<country wicri:rule="url">Slovénie</country>
</affiliation>
</author>
<author><name sortKey="Rindflesch, C" sort="Rindflesch, C" uniqKey="Rindflesch C" first="C." last="Rindflesch">C. Rindflesch</name>
<affiliation wicri:level="1"><mods:affiliation>National Library of Medicine, NIH, Bethesda, MD, USA</mods:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Library of Medicine, NIH, Bethesda, MD</wicri:regionArea>
</affiliation>
<affiliation><mods:affiliation>E-mail: tcr@nlm.nih.gov</mods:affiliation>
<wicri:noCountry code="no comma">E-mail: tcr@nlm.nih.gov</wicri:noCountry>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="s">Lecture Notes in Computer Science</title>
<imprint><date>2010</date>
</imprint>
<idno type="ISSN">0302-9743</idno>
<idno type="eISSN">1611-3349</idno>
<idno type="ISSN">0302-9743</idno>
</series>
<idno type="istex">FC61C703D43C762B3CFE3E3BCFC4A3F6727E56C9</idno>
<idno type="DOI">10.1007/978-3-642-13131-8_7</idno>
<idno type="ChapterID">Chap7</idno>
<idno type="ChapterID">7</idno>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0302-9743</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass></textClass>
<langUsage><language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Abstract: Although microarray experiments have great potential to support progress in biomedical research, results are not easy to interpret. Information about the functions and relations of relevant genes needs to be extracted from the vast biomedical literature. A potential solution is to use computerized text analysis methods. Our proposal enhances these methods with semantic relations. We describe an application that integrates such relations with microarray results and discuss its benefits in supporting enhanced access to the relevant literature for interpretation of results and novel hypotheses generation. The application is available at http://sembt.mf.uni-lj.si</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/ParkinsonV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000F21 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000F21 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Sante |area= ParkinsonV1 |flux= Main |étape= Curation |type= RBID |clé= ISTEX:FC61C703D43C762B3CFE3E3BCFC4A3F6727E56C9 |texte= Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation }}
This area was generated with Dilib version V0.6.23. |