Tools and data services registry: a community effort to document bioinformatics resources.
Identifieur interne : 000208 ( PubMed/Corpus ); précédent : 000207; suivant : 000209Tools and data services registry: a community effort to document bioinformatics resources.
Auteurs : Jon Ison ; Kristoffer Rapacki ; Hervé Ménager ; Matúš Kalaš ; Emil Rydza ; Piotr Chmura ; Christian Anthon ; Niall Beard ; Karel Berka ; Dan Bolser ; Tim Booth ; Anthony Bretaudeau ; Jan Brezovsky ; Rita Casadio ; Gianni Cesareni ; Frederik Coppens ; Michael Cornell ; Gianmauro Cuccuru ; Kristian Davidsen ; Gianluca Della Vedova ; Tunca Dogan ; Olivia Doppelt-Azeroual ; Laura Emery ; Elisabeth Gasteiger ; Thomas Gatter ; Tatyana Goldberg ; Marie Grosjean ; Björn Grüning ; Manuela Helmer-Citterich ; Hans Ienasescu ; Vassilios Ioannidis ; Martin Closter Jespersen ; Rafael Jimenez ; Nick Juty ; Peter Juvan ; Maximilian Koch ; Camille Laibe ; Jing-Woei Li ; Luana Licata ; Fabien Mareuil ; Ivan Mi Eti ; Rune M Llegaard Friborg ; Sebastien Moretti ; Chris Morris ; Steffen Möller ; Aleksandra Nenadic ; Hedi Peterson ; Giuseppe Profiti ; Peter Rice ; Paolo Romano ; Paola Roncaglia ; Rabie Saidi ; Andrea Schafferhans ; Veit Schw Mmle ; Callum Smith ; Maria Maddalena Sperotto ; Heinz Stockinger ; Radka Svobodová Va Eková ; Silvio C E. Tosatto ; Victor De La Torre ; Paolo Uva ; Allegra Via ; Guy Yachdav ; Federico Zambelli ; Gert Vriend ; Burkhard Rost ; Helen Parkinson ; Peter L Ngreen ; S Ren BrunakSource :
- Nucleic acids research [ 1362-4962 ] ; 2016.
English descriptors
- KwdEn :
- MESH :
Abstract
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
DOI: 10.1093/nar/gkv1116
PubMed: 26538599
Links to Exploration step
pubmed:26538599Le document en format XML
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Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kalas, Matus" sort="Kalas, Matus" uniqKey="Kalas M" first="Matúš" last="Kalaš">Matúš Kalaš</name><affiliation><nlm:affiliation>Computational Biology Unit, Department of Informatics, University of Bergen, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Rydza, Emil" sort="Rydza, Emil" uniqKey="Rydza E" first="Emil" last="Rydza">Emil Rydza</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Chmura, Piotr" sort="Chmura, Piotr" uniqKey="Chmura P" first="Piotr" last="Chmura">Piotr Chmura</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Anthon, Christian" sort="Anthon, Christian" uniqKey="Anthon C" first="Christian" last="Anthon">Christian Anthon</name><affiliation><nlm:affiliation>Department of Veterinary Clinical and Animal Sciences, Faculty for Health and Medical Sciences, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Beard, Niall" sort="Beard, Niall" uniqKey="Beard N" first="Niall" last="Beard">Niall Beard</name><affiliation><nlm:affiliation>School of Computer Science, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Berka, Karel" sort="Berka, Karel" uniqKey="Berka K" first="Karel" last="Berka">Karel Berka</name><affiliation><nlm:affiliation>Department of Physical Chemistry, RCPTM, Faculty of Science, Palacky University, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Bolser, Dan" sort="Bolser, Dan" uniqKey="Bolser D" first="Dan" last="Bolser">Dan Bolser</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Booth, Tim" sort="Booth, Tim" uniqKey="Booth T" first="Tim" last="Booth">Tim Booth</name><affiliation><nlm:affiliation>NEBC Wallingford, Centre for Ecology and Hydrology, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Bretaudeau, Anthony" sort="Bretaudeau, Anthony" uniqKey="Bretaudeau A" first="Anthony" last="Bretaudeau">Anthony Bretaudeau</name><affiliation><nlm:affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), France INRIA, IRISA, GenOuest Core Facility, France.</nlm:affiliation></affiliation></author><author><name sortKey="Brezovsky, Jan" sort="Brezovsky, Jan" uniqKey="Brezovsky J" first="Jan" last="Brezovsky">Jan Brezovsky</name><affiliation><nlm:affiliation>Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Casadio, Rita" sort="Casadio, Rita" uniqKey="Casadio R" first="Rita" last="Casadio">Rita Casadio</name><affiliation><nlm:affiliation>Bologna Biocomputing Group, University of Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Cesareni, Gianni" sort="Cesareni, Gianni" uniqKey="Cesareni G" first="Gianni" last="Cesareni">Gianni Cesareni</name><affiliation><nlm:affiliation>Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Coppens, Frederik" sort="Coppens, Frederik" uniqKey="Coppens F" first="Frederik" last="Coppens">Frederik Coppens</name><affiliation><nlm:affiliation>Department of Plant Systems Biology, VIB, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Cornell, Michael" sort="Cornell, Michael" uniqKey="Cornell M" first="Michael" last="Cornell">Michael Cornell</name><affiliation><nlm:affiliation>Faculty of Life Sciences, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Cuccuru, Gianmauro" sort="Cuccuru, Gianmauro" uniqKey="Cuccuru G" first="Gianmauro" last="Cuccuru">Gianmauro Cuccuru</name><affiliation><nlm:affiliation>Bioinformatics, CRS4, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Davidsen, Kristian" sort="Davidsen, Kristian" uniqKey="Davidsen K" first="Kristian" last="Davidsen">Kristian Davidsen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Vedova, Gianluca Della" sort="Vedova, Gianluca Della" uniqKey="Vedova G" first="Gianluca Della" last="Vedova">Gianluca Della Vedova</name><affiliation><nlm:affiliation>Dept. of Computer Science, Systems and Communication. Univ. Milano-Bicocca, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Dogan, Tunca" sort="Dogan, Tunca" uniqKey="Dogan T" first="Tunca" last="Dogan">Tunca Dogan</name><affiliation><nlm:affiliation>UniProt, European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Doppelt Azeroual, Olivia" sort="Doppelt Azeroual, Olivia" uniqKey="Doppelt Azeroual O" first="Olivia" last="Doppelt-Azeroual">Olivia Doppelt-Azeroual</name><affiliation><nlm:affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Emery, Laura" sort="Emery, Laura" uniqKey="Emery L" first="Laura" last="Emery">Laura Emery</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Gasteiger, Elisabeth" sort="Gasteiger, Elisabeth" uniqKey="Gasteiger E" first="Elisabeth" last="Gasteiger">Elisabeth Gasteiger</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Gatter, Thomas" sort="Gatter, Thomas" uniqKey="Gatter T" first="Thomas" last="Gatter">Thomas Gatter</name><affiliation><nlm:affiliation>Faculty of Technology and Center for Biotechnology, Universität Bielefeld, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Goldberg, Tatyana" sort="Goldberg, Tatyana" uniqKey="Goldberg T" first="Tatyana" last="Goldberg">Tatyana Goldberg</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Grosjean, Marie" sort="Grosjean, Marie" uniqKey="Grosjean M" first="Marie" last="Grosjean">Marie Grosjean</name><affiliation><nlm:affiliation>Institut Français de Bioinformatique (French Institute of Bioinformatics), CNRS, UMS3601, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gruning, Bjorn" sort="Gruning, Bjorn" uniqKey="Gruning B" first="Björn" last="Grüning">Björn Grüning</name><affiliation><nlm:affiliation>Albert-Ludwigs-Universität Freiburg, Fahnenbergplatz, 79085 Freiburg.</nlm:affiliation></affiliation></author><author><name sortKey="Helmer Citterich, Manuela" sort="Helmer Citterich, Manuela" uniqKey="Helmer Citterich M" first="Manuela" last="Helmer-Citterich">Manuela Helmer-Citterich</name><affiliation><nlm:affiliation>Centre for Molecular Bioinformatics, Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Ienasescu, Hans" sort="Ienasescu, Hans" uniqKey="Ienasescu H" first="Hans" last="Ienasescu">Hans Ienasescu</name><affiliation><nlm:affiliation>Bioinformatics Centre, Department of Biology, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Ioannidis, Vassilios" sort="Ioannidis, Vassilios" uniqKey="Ioannidis V" first="Vassilios" last="Ioannidis">Vassilios Ioannidis</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Jespersen, Martin Closter" sort="Jespersen, Martin Closter" uniqKey="Jespersen M" first="Martin Closter" last="Jespersen">Martin Closter Jespersen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Jimenez, Rafael" sort="Jimenez, Rafael" uniqKey="Jimenez R" first="Rafael" last="Jimenez">Rafael Jimenez</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Juty, Nick" sort="Juty, Nick" uniqKey="Juty N" first="Nick" last="Juty">Nick Juty</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Juvan, Peter" sort="Juvan, Peter" uniqKey="Juvan P" first="Peter" last="Juvan">Peter Juvan</name><affiliation><nlm:affiliation>Centre for Functional Genomics and Biochips, Faculty of Medicine, University of Ljubljana, Slovenia.</nlm:affiliation></affiliation></author><author><name sortKey="Koch, Maximilian" sort="Koch, Maximilian" uniqKey="Koch M" first="Maximilian" last="Koch">Maximilian Koch</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Laibe, Camille" sort="Laibe, Camille" uniqKey="Laibe C" first="Camille" last="Laibe">Camille Laibe</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Jing Woei" sort="Li, Jing Woei" uniqKey="Li J" first="Jing-Woei" last="Li">Jing-Woei Li</name><affiliation><nlm:affiliation>Faculty of Medicine, The Chinese University of Hong Kong, China Hong Kong Bioinformatics Centre, School of Life Sciences,The Chinese University of Hong Kong, China.</nlm:affiliation></affiliation></author><author><name sortKey="Licata, Luana" sort="Licata, Luana" uniqKey="Licata L" first="Luana" last="Licata">Luana Licata</name><affiliation><nlm:affiliation>Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Mareuil, Fabien" sort="Mareuil, Fabien" uniqKey="Mareuil F" first="Fabien" last="Mareuil">Fabien Mareuil</name><affiliation><nlm:affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mi Eti, Ivan" sort="Mi Eti, Ivan" uniqKey="Mi Eti I" first="Ivan" last="Mi Eti">Ivan Mi Eti</name><affiliation><nlm:affiliation>Department of Biomedical Sciences, University of Padua, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Friborg, Rune M Llegaard" sort="Friborg, Rune M Llegaard" uniqKey="Friborg R" first="Rune M Llegaard" last="Friborg">Rune M Llegaard Friborg</name><affiliation><nlm:affiliation>Bioinformatics Research Centre (BiRC), Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Moretti, Sebastien" sort="Moretti, Sebastien" uniqKey="Moretti S" first="Sebastien" last="Moretti">Sebastien Moretti</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland Department of Ecology and Evolution, Biophore, Evolutionary Bioinformatics group, University of Lausanne, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Morris, Chris" sort="Morris, Chris" uniqKey="Morris C" first="Chris" last="Morris">Chris Morris</name><affiliation><nlm:affiliation>STFC, Daresbury Laboratory, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Moller, Steffen" sort="Moller, Steffen" uniqKey="Moller S" first="Steffen" last="Möller">Steffen Möller</name><affiliation><nlm:affiliation>Department of Dermatology, University of Lübeck, Germany Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Nenadic, Aleksandra" sort="Nenadic, Aleksandra" uniqKey="Nenadic A" first="Aleksandra" last="Nenadic">Aleksandra Nenadic</name><affiliation><nlm:affiliation>School of Computer Science, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Peterson, Hedi" sort="Peterson, Hedi" uniqKey="Peterson H" first="Hedi" last="Peterson">Hedi Peterson</name><affiliation><nlm:affiliation>Institute of Computer Science, University of Tartu, Estonia.</nlm:affiliation></affiliation></author><author><name sortKey="Profiti, Giuseppe" sort="Profiti, Giuseppe" uniqKey="Profiti G" first="Giuseppe" last="Profiti">Giuseppe Profiti</name><affiliation><nlm:affiliation>Bologna Biocomputing Group, University of Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Rice, Peter" sort="Rice, Peter" uniqKey="Rice P" first="Peter" last="Rice">Peter Rice</name><affiliation><nlm:affiliation>Department of Computing, William Penney Laboratory, Imperial College London, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name><affiliation><nlm:affiliation>IRCCS AOU San Martino IST, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Roncaglia, Paola" sort="Roncaglia, Paola" uniqKey="Roncaglia P" first="Paola" last="Roncaglia">Paola Roncaglia</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Saidi, Rabie" sort="Saidi, Rabie" uniqKey="Saidi R" first="Rabie" last="Saidi">Rabie Saidi</name><affiliation><nlm:affiliation>UniProt, European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Schafferhans, Andrea" sort="Schafferhans, Andrea" uniqKey="Schafferhans A" first="Andrea" last="Schafferhans">Andrea Schafferhans</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Schw Mmle, Veit" sort="Schw Mmle, Veit" uniqKey="Schw Mmle V" first="Veit" last="Schw Mmle">Veit Schw Mmle</name><affiliation><nlm:affiliation>Protein Research Group, Department for Biochemistry and Molecular Biology, University of Southern Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Smith, Callum" sort="Smith, Callum" uniqKey="Smith C" first="Callum" last="Smith">Callum Smith</name><affiliation><nlm:affiliation>Instruct, WTCHG, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Sperotto, Maria Maddalena" sort="Sperotto, Maria Maddalena" uniqKey="Sperotto M" first="Maria Maddalena" last="Sperotto">Maria Maddalena Sperotto</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Stockinger, Heinz" sort="Stockinger, Heinz" uniqKey="Stockinger H" first="Heinz" last="Stockinger">Heinz Stockinger</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Va Ekova, Radka Svobodova" sort="Va Ekova, Radka Svobodova" uniqKey="Va Ekova R" first="Radka Svobodová" last="Va Eková">Radka Svobodová Va Eková</name><affiliation><nlm:affiliation>Central European Institute of Technology (CEITEC), Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Tosatto, Silvio C E" sort="Tosatto, Silvio C E" uniqKey="Tosatto S" first="Silvio C E" last="Tosatto">Silvio C E. Tosatto</name><affiliation><nlm:affiliation>Department of Biomedical Sciences, University of Padua, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="De La Torre, Victor" sort="De La Torre, Victor" uniqKey="De La Torre V" first="Victor" last="De La Torre">Victor De La Torre</name><affiliation><nlm:affiliation>National Bioinformatics Institute Unit (INB), Fundacion Centro Nacional de Investigaciones Oncologicas, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Uva, Paolo" sort="Uva, Paolo" uniqKey="Uva P" first="Paolo" last="Uva">Paolo Uva</name><affiliation><nlm:affiliation>Bioinformatics, CRS4, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Via, Allegra" sort="Via, Allegra" uniqKey="Via A" first="Allegra" last="Via">Allegra Via</name><affiliation><nlm:affiliation>Dept. of Physics, Sapienza University, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Yachdav, Guy" sort="Yachdav, Guy" uniqKey="Yachdav G" first="Guy" last="Yachdav">Guy Yachdav</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Zambelli, Federico" sort="Zambelli, Federico" uniqKey="Zambelli F" first="Federico" last="Zambelli">Federico Zambelli</name><affiliation><nlm:affiliation>Institute of Biomembranes and Bioenergetics, National Research Council (CNR), and Dept. of Biosciences, University of Milano, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Vriend, Gert" sort="Vriend, Gert" uniqKey="Vriend G" first="Gert" last="Vriend">Gert Vriend</name><affiliation><nlm:affiliation>Radboud University Medical Centre, CMBI, Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Rost, Burkhard" sort="Rost, Burkhard" uniqKey="Rost B" first="Burkhard" last="Rost">Burkhard Rost</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="L Ngreen, Peter" sort="L Ngreen, Peter" uniqKey="L Ngreen P" first="Peter" last="L Ngreen">Peter L Ngreen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Brunak, S Ren" sort="Brunak, S Ren" uniqKey="Brunak S" first="S Ren" last="Brunak">S Ren Brunak</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:26538599</idno><idno type="pmid">26538599</idno><idno type="doi">10.1093/nar/gkv1116</idno><idno type="wicri:Area/PubMed/Corpus">000208</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000208</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Tools and data services registry: a community effort to document bioinformatics resources.</title><author><name sortKey="Ison, Jon" sort="Ison, Jon" uniqKey="Ison J" first="Jon" last="Ison">Jon Ison</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark jison@cbs.dtu.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Rapacki, Kristoffer" sort="Rapacki, Kristoffer" uniqKey="Rapacki K" first="Kristoffer" last="Rapacki">Kristoffer Rapacki</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Menager, Herve" sort="Menager, Herve" uniqKey="Menager H" first="Hervé" last="Ménager">Hervé Ménager</name><affiliation><nlm:affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kalas, Matus" sort="Kalas, Matus" uniqKey="Kalas M" first="Matúš" last="Kalaš">Matúš Kalaš</name><affiliation><nlm:affiliation>Computational Biology Unit, Department of Informatics, University of Bergen, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Rydza, Emil" sort="Rydza, Emil" uniqKey="Rydza E" first="Emil" last="Rydza">Emil Rydza</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Chmura, Piotr" sort="Chmura, Piotr" uniqKey="Chmura P" first="Piotr" last="Chmura">Piotr Chmura</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Anthon, Christian" sort="Anthon, Christian" uniqKey="Anthon C" first="Christian" last="Anthon">Christian Anthon</name><affiliation><nlm:affiliation>Department of Veterinary Clinical and Animal Sciences, Faculty for Health and Medical Sciences, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Beard, Niall" sort="Beard, Niall" uniqKey="Beard N" first="Niall" last="Beard">Niall Beard</name><affiliation><nlm:affiliation>School of Computer Science, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Berka, Karel" sort="Berka, Karel" uniqKey="Berka K" first="Karel" last="Berka">Karel Berka</name><affiliation><nlm:affiliation>Department of Physical Chemistry, RCPTM, Faculty of Science, Palacky University, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Bolser, Dan" sort="Bolser, Dan" uniqKey="Bolser D" first="Dan" last="Bolser">Dan Bolser</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Booth, Tim" sort="Booth, Tim" uniqKey="Booth T" first="Tim" last="Booth">Tim Booth</name><affiliation><nlm:affiliation>NEBC Wallingford, Centre for Ecology and Hydrology, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Bretaudeau, Anthony" sort="Bretaudeau, Anthony" uniqKey="Bretaudeau A" first="Anthony" last="Bretaudeau">Anthony Bretaudeau</name><affiliation><nlm:affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), France INRIA, IRISA, GenOuest Core Facility, France.</nlm:affiliation></affiliation></author><author><name sortKey="Brezovsky, Jan" sort="Brezovsky, Jan" uniqKey="Brezovsky J" first="Jan" last="Brezovsky">Jan Brezovsky</name><affiliation><nlm:affiliation>Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Casadio, Rita" sort="Casadio, Rita" uniqKey="Casadio R" first="Rita" last="Casadio">Rita Casadio</name><affiliation><nlm:affiliation>Bologna Biocomputing Group, University of Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Cesareni, Gianni" sort="Cesareni, Gianni" uniqKey="Cesareni G" first="Gianni" last="Cesareni">Gianni Cesareni</name><affiliation><nlm:affiliation>Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Coppens, Frederik" sort="Coppens, Frederik" uniqKey="Coppens F" first="Frederik" last="Coppens">Frederik Coppens</name><affiliation><nlm:affiliation>Department of Plant Systems Biology, VIB, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Cornell, Michael" sort="Cornell, Michael" uniqKey="Cornell M" first="Michael" last="Cornell">Michael Cornell</name><affiliation><nlm:affiliation>Faculty of Life Sciences, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Cuccuru, Gianmauro" sort="Cuccuru, Gianmauro" uniqKey="Cuccuru G" first="Gianmauro" last="Cuccuru">Gianmauro Cuccuru</name><affiliation><nlm:affiliation>Bioinformatics, CRS4, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Davidsen, Kristian" sort="Davidsen, Kristian" uniqKey="Davidsen K" first="Kristian" last="Davidsen">Kristian Davidsen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Vedova, Gianluca Della" sort="Vedova, Gianluca Della" uniqKey="Vedova G" first="Gianluca Della" last="Vedova">Gianluca Della Vedova</name><affiliation><nlm:affiliation>Dept. of Computer Science, Systems and Communication. Univ. Milano-Bicocca, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Dogan, Tunca" sort="Dogan, Tunca" uniqKey="Dogan T" first="Tunca" last="Dogan">Tunca Dogan</name><affiliation><nlm:affiliation>UniProt, European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Doppelt Azeroual, Olivia" sort="Doppelt Azeroual, Olivia" uniqKey="Doppelt Azeroual O" first="Olivia" last="Doppelt-Azeroual">Olivia Doppelt-Azeroual</name><affiliation><nlm:affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Emery, Laura" sort="Emery, Laura" uniqKey="Emery L" first="Laura" last="Emery">Laura Emery</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Gasteiger, Elisabeth" sort="Gasteiger, Elisabeth" uniqKey="Gasteiger E" first="Elisabeth" last="Gasteiger">Elisabeth Gasteiger</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Gatter, Thomas" sort="Gatter, Thomas" uniqKey="Gatter T" first="Thomas" last="Gatter">Thomas Gatter</name><affiliation><nlm:affiliation>Faculty of Technology and Center for Biotechnology, Universität Bielefeld, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Goldberg, Tatyana" sort="Goldberg, Tatyana" uniqKey="Goldberg T" first="Tatyana" last="Goldberg">Tatyana Goldberg</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Grosjean, Marie" sort="Grosjean, Marie" uniqKey="Grosjean M" first="Marie" last="Grosjean">Marie Grosjean</name><affiliation><nlm:affiliation>Institut Français de Bioinformatique (French Institute of Bioinformatics), CNRS, UMS3601, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gruning, Bjorn" sort="Gruning, Bjorn" uniqKey="Gruning B" first="Björn" last="Grüning">Björn Grüning</name><affiliation><nlm:affiliation>Albert-Ludwigs-Universität Freiburg, Fahnenbergplatz, 79085 Freiburg.</nlm:affiliation></affiliation></author><author><name sortKey="Helmer Citterich, Manuela" sort="Helmer Citterich, Manuela" uniqKey="Helmer Citterich M" first="Manuela" last="Helmer-Citterich">Manuela Helmer-Citterich</name><affiliation><nlm:affiliation>Centre for Molecular Bioinformatics, Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Ienasescu, Hans" sort="Ienasescu, Hans" uniqKey="Ienasescu H" first="Hans" last="Ienasescu">Hans Ienasescu</name><affiliation><nlm:affiliation>Bioinformatics Centre, Department of Biology, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Ioannidis, Vassilios" sort="Ioannidis, Vassilios" uniqKey="Ioannidis V" first="Vassilios" last="Ioannidis">Vassilios Ioannidis</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Jespersen, Martin Closter" sort="Jespersen, Martin Closter" uniqKey="Jespersen M" first="Martin Closter" last="Jespersen">Martin Closter Jespersen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Jimenez, Rafael" sort="Jimenez, Rafael" uniqKey="Jimenez R" first="Rafael" last="Jimenez">Rafael Jimenez</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Juty, Nick" sort="Juty, Nick" uniqKey="Juty N" first="Nick" last="Juty">Nick Juty</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Juvan, Peter" sort="Juvan, Peter" uniqKey="Juvan P" first="Peter" last="Juvan">Peter Juvan</name><affiliation><nlm:affiliation>Centre for Functional Genomics and Biochips, Faculty of Medicine, University of Ljubljana, Slovenia.</nlm:affiliation></affiliation></author><author><name sortKey="Koch, Maximilian" sort="Koch, Maximilian" uniqKey="Koch M" first="Maximilian" last="Koch">Maximilian Koch</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Laibe, Camille" sort="Laibe, Camille" uniqKey="Laibe C" first="Camille" last="Laibe">Camille Laibe</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Jing Woei" sort="Li, Jing Woei" uniqKey="Li J" first="Jing-Woei" last="Li">Jing-Woei Li</name><affiliation><nlm:affiliation>Faculty of Medicine, The Chinese University of Hong Kong, China Hong Kong Bioinformatics Centre, School of Life Sciences,The Chinese University of Hong Kong, China.</nlm:affiliation></affiliation></author><author><name sortKey="Licata, Luana" sort="Licata, Luana" uniqKey="Licata L" first="Luana" last="Licata">Luana Licata</name><affiliation><nlm:affiliation>Dept. of Biology, University of Rome Tor Vergata, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Mareuil, Fabien" sort="Mareuil, Fabien" uniqKey="Mareuil F" first="Fabien" last="Mareuil">Fabien Mareuil</name><affiliation><nlm:affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mi Eti, Ivan" sort="Mi Eti, Ivan" uniqKey="Mi Eti I" first="Ivan" last="Mi Eti">Ivan Mi Eti</name><affiliation><nlm:affiliation>Department of Biomedical Sciences, University of Padua, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Friborg, Rune M Llegaard" sort="Friborg, Rune M Llegaard" uniqKey="Friborg R" first="Rune M Llegaard" last="Friborg">Rune M Llegaard Friborg</name><affiliation><nlm:affiliation>Bioinformatics Research Centre (BiRC), Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Moretti, Sebastien" sort="Moretti, Sebastien" uniqKey="Moretti S" first="Sebastien" last="Moretti">Sebastien Moretti</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland Department of Ecology and Evolution, Biophore, Evolutionary Bioinformatics group, University of Lausanne, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Morris, Chris" sort="Morris, Chris" uniqKey="Morris C" first="Chris" last="Morris">Chris Morris</name><affiliation><nlm:affiliation>STFC, Daresbury Laboratory, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Moller, Steffen" sort="Moller, Steffen" uniqKey="Moller S" first="Steffen" last="Möller">Steffen Möller</name><affiliation><nlm:affiliation>Department of Dermatology, University of Lübeck, Germany Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Nenadic, Aleksandra" sort="Nenadic, Aleksandra" uniqKey="Nenadic A" first="Aleksandra" last="Nenadic">Aleksandra Nenadic</name><affiliation><nlm:affiliation>School of Computer Science, University of Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Peterson, Hedi" sort="Peterson, Hedi" uniqKey="Peterson H" first="Hedi" last="Peterson">Hedi Peterson</name><affiliation><nlm:affiliation>Institute of Computer Science, University of Tartu, Estonia.</nlm:affiliation></affiliation></author><author><name sortKey="Profiti, Giuseppe" sort="Profiti, Giuseppe" uniqKey="Profiti G" first="Giuseppe" last="Profiti">Giuseppe Profiti</name><affiliation><nlm:affiliation>Bologna Biocomputing Group, University of Bologna, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Rice, Peter" sort="Rice, Peter" uniqKey="Rice P" first="Peter" last="Rice">Peter Rice</name><affiliation><nlm:affiliation>Department of Computing, William Penney Laboratory, Imperial College London, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name><affiliation><nlm:affiliation>IRCCS AOU San Martino IST, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Roncaglia, Paola" sort="Roncaglia, Paola" uniqKey="Roncaglia P" first="Paola" last="Roncaglia">Paola Roncaglia</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Saidi, Rabie" sort="Saidi, Rabie" uniqKey="Saidi R" first="Rabie" last="Saidi">Rabie Saidi</name><affiliation><nlm:affiliation>UniProt, European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="Schafferhans, Andrea" sort="Schafferhans, Andrea" uniqKey="Schafferhans A" first="Andrea" last="Schafferhans">Andrea Schafferhans</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Schw Mmle, Veit" sort="Schw Mmle, Veit" uniqKey="Schw Mmle V" first="Veit" last="Schw Mmle">Veit Schw Mmle</name><affiliation><nlm:affiliation>Protein Research Group, Department for Biochemistry and Molecular Biology, University of Southern Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Smith, Callum" sort="Smith, Callum" uniqKey="Smith C" first="Callum" last="Smith">Callum Smith</name><affiliation><nlm:affiliation>Instruct, WTCHG, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Sperotto, Maria Maddalena" sort="Sperotto, Maria Maddalena" uniqKey="Sperotto M" first="Maria Maddalena" last="Sperotto">Maria Maddalena Sperotto</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Stockinger, Heinz" sort="Stockinger, Heinz" uniqKey="Stockinger H" first="Heinz" last="Stockinger">Heinz Stockinger</name><affiliation><nlm:affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Va Ekova, Radka Svobodova" sort="Va Ekova, Radka Svobodova" uniqKey="Va Ekova R" first="Radka Svobodová" last="Va Eková">Radka Svobodová Va Eková</name><affiliation><nlm:affiliation>Central European Institute of Technology (CEITEC), Czech Republic.</nlm:affiliation></affiliation></author><author><name sortKey="Tosatto, Silvio C E" sort="Tosatto, Silvio C E" uniqKey="Tosatto S" first="Silvio C E" last="Tosatto">Silvio C E. Tosatto</name><affiliation><nlm:affiliation>Department of Biomedical Sciences, University of Padua, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="De La Torre, Victor" sort="De La Torre, Victor" uniqKey="De La Torre V" first="Victor" last="De La Torre">Victor De La Torre</name><affiliation><nlm:affiliation>National Bioinformatics Institute Unit (INB), Fundacion Centro Nacional de Investigaciones Oncologicas, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Uva, Paolo" sort="Uva, Paolo" uniqKey="Uva P" first="Paolo" last="Uva">Paolo Uva</name><affiliation><nlm:affiliation>Bioinformatics, CRS4, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Via, Allegra" sort="Via, Allegra" uniqKey="Via A" first="Allegra" last="Via">Allegra Via</name><affiliation><nlm:affiliation>Dept. of Physics, Sapienza University, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Yachdav, Guy" sort="Yachdav, Guy" uniqKey="Yachdav G" first="Guy" last="Yachdav">Guy Yachdav</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Zambelli, Federico" sort="Zambelli, Federico" uniqKey="Zambelli F" first="Federico" last="Zambelli">Federico Zambelli</name><affiliation><nlm:affiliation>Institute of Biomembranes and Bioenergetics, National Research Council (CNR), and Dept. of Biosciences, University of Milano, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Vriend, Gert" sort="Vriend, Gert" uniqKey="Vriend G" first="Gert" last="Vriend">Gert Vriend</name><affiliation><nlm:affiliation>Radboud University Medical Centre, CMBI, Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Rost, Burkhard" sort="Rost, Burkhard" uniqKey="Rost B" first="Burkhard" last="Rost">Burkhard Rost</name><affiliation><nlm:affiliation>Department of Informatics, Bioinformatics-I12, TUM, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><affiliation><nlm:affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</nlm:affiliation></affiliation></author><author><name sortKey="L Ngreen, Peter" sort="L Ngreen, Peter" uniqKey="L Ngreen P" first="Peter" last="L Ngreen">Peter L Ngreen</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Brunak, S Ren" sort="Brunak, S Ren" uniqKey="Brunak S" first="S Ren" last="Brunak">S Ren Brunak</name><affiliation><nlm:affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Nucleic acids research</title><idno type="eISSN">1362-4962</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Computational Biology</term><term>Data Curation</term><term>Registries</term><term>Software</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Computational Biology</term><term>Data Curation</term><term>Registries</term><term>Software</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26538599</PMID><DateCreated><Year>2016</Year><Month>01</Month><Day>07</Day></DateCreated><DateCompleted><Year>2016</Year><Month>06</Month><Day>15</Day></DateCompleted><DateRevised><Year>2016</Year><Month>10</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1362-4962</ISSN><JournalIssue CitedMedium="Internet"><Volume>44</Volume><Issue>D1</Issue><PubDate><Year>2016</Year><Month>Jan</Month><Day>04</Day></PubDate></JournalIssue><Title>Nucleic acids research</Title><ISOAbbreviation>Nucleic Acids Res.</ISOAbbreviation></Journal><ArticleTitle>Tools and data services registry: a community effort to document bioinformatics resources.</ArticleTitle><Pagination><MedlinePgn>D38-47</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/nar/gkv1116</ELocationID><Abstract><AbstractText>Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.</AbstractText><CopyrightInformation>© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ison</LastName><ForeName>Jon</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark jison@cbs.dtu.dk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rapacki</LastName><ForeName>Kristoffer</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ménager</LastName><ForeName>Hervé</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Centre d'Informatique pour la Biologie, C3BI, Institut Pasteur, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kalaš</LastName><ForeName>Matúš</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Computational Biology Unit, Department of Informatics, University of Bergen, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rydza</LastName><ForeName>Emil</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chmura</LastName><ForeName>Piotr</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Anthon</LastName><ForeName>Christian</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Veterinary Clinical and Animal Sciences, Faculty for Health and Medical Sciences, University of Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beard</LastName><ForeName>Niall</ForeName><Initials>N</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-2627-0231</Identifier><AffiliationInfo><Affiliation>School of Computer Science, University of Manchester, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Berka</LastName><ForeName>Karel</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Physical Chemistry, RCPTM, Faculty of Science, Palacky University, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bolser</LastName><ForeName>Dan</ForeName><Initials>D</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3991-0859</Identifier><AffiliationInfo><Affiliation>The European Bioinformatics Institute (EMBL-EBI), UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Booth</LastName><ForeName>Tim</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>NEBC Wallingford, Centre for Ecology and Hydrology, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bretaudeau</LastName><ForeName>Anthony</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), France INRIA, IRISA, GenOuest Core Facility, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brezovsky</LastName><ForeName>Jan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Casadio</LastName><ForeName>Rita</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Bologna Biocomputing Group, University of Bologna, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cesareni</LastName><ForeName>Gianni</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Dept. of Biology, University of Rome Tor Vergata, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coppens</LastName><ForeName>Frederik</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Plant Systems Biology, VIB, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cornell</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Faculty of Life Sciences, University of Manchester, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cuccuru</LastName><ForeName>Gianmauro</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Bioinformatics, CRS4, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Davidsen</LastName><ForeName>Kristian</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vedova</LastName><ForeName>Gianluca Della</ForeName><Initials>GD</Initials><AffiliationInfo><Affiliation>Dept. of Computer Science, Systems and Communication. Univ. 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ValidYN="Y"><LastName>Stockinger</LastName><ForeName>Heinz</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>SIB Swiss Institute of Bioinformatics, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vařeková</LastName><ForeName>Radka Svobodová</ForeName><Initials>RS</Initials><AffiliationInfo><Affiliation>Central European Institute of Technology (CEITEC), Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tosatto</LastName><ForeName>Silvio C E</ForeName><Initials>SC</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-4525-7793</Identifier><AffiliationInfo><Affiliation>Department of Biomedical Sciences, University of Padua, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de la Torre</LastName><ForeName>Victor</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>National Bioinformatics Institute Unit (INB), Fundacion Centro Nacional de Investigaciones 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ValidYN="Y"><LastName>Brunak</LastName><ForeName>Søren</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Center for Biological Sequence Analysis Department of Systems Biology, Technical University of Denmark, Denmark Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>U41 HG002273</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>5U41HG002273-14</GrantID><Acronym>HG</Acronym><Agency>NHGRI NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. 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