Circadian clocks control many self-sustained rhythms in physiology and behavior with approximately 24-hour periodicity. In many organisms, oxidative stress and aging negatively impact the circadian system and sleep. Conversely, loss of the clock decreases resistance to oxidative stress, and may reduce lifespan and speed up brain aging and neurodegeneration. Here we examined the effects of clock disruptions on locomotor aging and longevity in Drosophila. We found that lifespan was similarly reduced in three arrhythmic mutants (Clk^AR, cyc⁰ and tim⁰) and in wild-type flies under constant light, which stops the clock. In contrast, Clk^AR mutants showed significantly faster age-related locomotor deficits (as monitored by startle-induced climbing) than cyc⁰ and tim⁰, or than control flies under constant light. Reactive oxygen species accumulated more with age in Clk^AR mutant brains, but this did not appear to contribute to the accelerated locomotor decline of the mutant. Clk, but not Cyc, inactivation by RNA interference in the pigment-dispersing factor (PDF)-expressing central pacemaker neurons led to similar loss of climbing performance as Clk^AR. Conversely, restoring Clk function in these cells was sufficient to rescue the Clk^AR locomotor phenotype, independently of behavioral rhythmicity. Accelerated locomotor decline of the Clk^AR mutant required expression of the PDF receptor and correlated to an apparent loss of dopaminergic neurons in the posterior protocerebral lateral 1 (PPL1) clusters. This neuronal loss was rescued when the Clk^AR mutation was placed in an apoptosis-deficient background. Impairing dopamine synthesis in a single pair of PPL1 neurons that innervate the mushroom bodies accelerated locomotor decline in otherwise wild-type flies. Our results therefore reveal a novel circadian-independent requirement for Clk in brain circadian neurons to maintain a subset of dopaminergic cells and avoid premature locomotor aging in Drosophila.