Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System
Identifieur interne : 000A82 ( Istex/Checkpoint ); précédent : 000A81; suivant : 000A83Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System
Auteurs : Khaled Khelif [France] ; Rose Dieng-Kuntz [France] ; Pascal Barbry [France]Source :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2005.
Abstract
Abstract: This paper describes MEAT (Memory of Experiments for the Analysis of Transcriptomes), a project aiming at supporting biologists working on DNA microarrays. We provide methodological and software support to build an experiment memory for this domain. Our approach, based on Semantic Web Technologies, is relying on formalized ontologies and semantic annotations of scientific articles and other knowledge sources. It can probably be extended to other massive analyses of biological events (as provided by proteomics, metabolomics...).
Url:
DOI: 10.1007/11581062_12
Affiliations:
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<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System</title><author><name sortKey="Khelif, Khaled" sort="Khelif, Khaled" uniqKey="Khelif K" first="Khaled" last="Khelif">Khaled Khelif</name></author><author><name sortKey="Dieng Kuntz, Rose" sort="Dieng Kuntz, Rose" uniqKey="Dieng Kuntz R" first="Rose" last="Dieng-Kuntz">Rose Dieng-Kuntz</name></author><author><name sortKey="Barbry, Pascal" sort="Barbry, Pascal" uniqKey="Barbry P" first="Pascal" last="Barbry">Pascal Barbry</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:94F26DEFDEA0DFBC2BEA2E15AB62835368D01A51</idno><date when="2005" year="2005">2005</date><idno type="doi">10.1007/11581062_12</idno><idno type="url">https://api.istex.fr/document/94F26DEFDEA0DFBC2BEA2E15AB62835368D01A51/fulltext/pdf</idno><idno type="wicri:Area/Istex/Corpus">000907</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000907</idno><idno type="wicri:Area/Istex/Curation">000907</idno><idno type="wicri:Area/Istex/Checkpoint">000A82</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000A82</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System</title><author><name sortKey="Khelif, Khaled" sort="Khelif, Khaled" uniqKey="Khelif K" first="Khaled" last="Khelif">Khaled Khelif</name><affiliation wicri:level="3"><country xml:lang="fr">France</country><wicri:regionArea>INRIA Sophia Antipolis, 2004 route des lucioles, 06902, Sophia Antipolis</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Sophia Antipolis</settlement></placeName></affiliation><affiliation wicri:level="1"><country wicri:rule="url">France</country></affiliation></author><author><name sortKey="Dieng Kuntz, Rose" sort="Dieng Kuntz, Rose" uniqKey="Dieng Kuntz R" first="Rose" last="Dieng-Kuntz">Rose Dieng-Kuntz</name><affiliation wicri:level="3"><country xml:lang="fr">France</country><wicri:regionArea>INRIA Sophia Antipolis, 2004 route des lucioles, 06902, Sophia Antipolis</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Sophia Antipolis</settlement></placeName></affiliation><affiliation wicri:level="1"><country wicri:rule="url">France</country></affiliation></author><author><name sortKey="Barbry, Pascal" sort="Barbry, Pascal" uniqKey="Barbry P" first="Pascal" last="Barbry">Pascal Barbry</name><affiliation wicri:level="3"><country xml:lang="fr">France</country><wicri:regionArea>IPMC, 660 route des lucioles, 06560, Sophia Antipolis</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Sophia Antipolis</settlement></placeName></affiliation><affiliation wicri:level="1"><country wicri:rule="url">France</country></affiliation></author></analytic><monogr></monogr><series><title level="s">Lecture Notes in Computer Science</title><imprint><date>2005</date></imprint><idno type="ISSN">0302-9743</idno><idno type="eISSN">1611-3349</idno><idno type="ISSN">0302-9743</idno></series><idno type="istex">94F26DEFDEA0DFBC2BEA2E15AB62835368D01A51</idno><idno type="DOI">10.1007/11581062_12</idno><idno type="ChapterID">12</idno><idno type="ChapterID">Chap12</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0302-9743</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: This paper describes MEAT (Memory of Experiments for the Analysis of Transcriptomes), a project aiming at supporting biologists working on DNA microarrays. We provide methodological and software support to build an experiment memory for this domain. Our approach, based on Semantic Web Technologies, is relying on formalized ontologies and semantic annotations of scientific articles and other knowledge sources. It can probably be extended to other massive analyses of biological events (as provided by proteomics, metabolomics...).</div></front></TEI><affiliations><list><country><li>France</li></country><region><li>Provence-Alpes-Côte d'Azur</li></region><settlement><li>Sophia Antipolis</li></settlement></list><tree><country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Khelif, Khaled" sort="Khelif, Khaled" uniqKey="Khelif K" first="Khaled" last="Khelif">Khaled Khelif</name></region><name sortKey="Barbry, Pascal" sort="Barbry, Pascal" uniqKey="Barbry P" first="Pascal" last="Barbry">Pascal Barbry</name><name sortKey="Barbry, Pascal" sort="Barbry, Pascal" uniqKey="Barbry P" first="Pascal" last="Barbry">Pascal Barbry</name><name sortKey="Dieng Kuntz, Rose" sort="Dieng Kuntz, Rose" uniqKey="Dieng Kuntz R" first="Rose" last="Dieng-Kuntz">Rose Dieng-Kuntz</name><name sortKey="Dieng Kuntz, Rose" sort="Dieng Kuntz, Rose" uniqKey="Dieng Kuntz R" first="Rose" last="Dieng-Kuntz">Rose Dieng-Kuntz</name><name sortKey="Khelif, Khaled" sort="Khelif, Khaled" uniqKey="Khelif K" first="Khaled" last="Khelif">Khaled Khelif</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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