PandemieGrippaleV1, PubMed, Curation, bibRecord, 000618

Phylogenetic and Molecular Analysis of an H7N7 Avian Influenza Virus Isolated in East Dongting Lake in 2012.

Identifieur interne : 000618 ( PubMed/Curation ); précédent : 000617; suivant : 000619

Phylogenetic and Molecular Analysis of an H7N7 Avian Influenza Virus Isolated in East Dongting Lake in 2012.

Source :

Biomedical and environmental sciences : BES [ 0895-3988 ] ; 2015.

RBID : pubmed:26248736

Descripteurs français

KwdFr :
- ARN viral (génétique), Animaux, Chine, Données de séquences moléculaires, Embryon non mammalien (virologie), Fèces (virologie), Grippe chez les oiseaux (virologie), Génome viral, Lacs (virologie), Maladies de la volaille (virologie), Oies (virologie), Phylogénie, Réaction de polymérisation en chaine en temps réel (médecine vétérinaire), Sous-type H7N7 du virus de la grippe A (génétique), Sous-type H7N7 du virus de la grippe A (isolement et purification), Séquence d'acides aminés.
MESH :
- génétique : ARN viral, Sous-type H7N7 du virus de la grippe A.
- isolement et purification : Sous-type H7N7 du virus de la grippe A.
- médecine vétérinaire : Réaction de polymérisation en chaine en temps réel.
- virologie : Embryon non mammalien, Fèces, Grippe chez les oiseaux, Lacs, Maladies de la volaille, Oies.
- Animaux, Chine, Données de séquences moléculaires, Génome viral, Phylogénie, Séquence d'acides aminés.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Amino Acid Sequence, Animals, China, Embryo, Nonmammalian (virology), Feces (virology), Geese (virology), Genome, Viral, Influenza A Virus, H7N7 Subtype (genetics), Influenza A Virus, H7N7 Subtype (isolation & purification), Influenza in Birds (virology), Lakes (virology), Molecular Sequence Data, Phylogeny, Poultry Diseases (virology), RNA, Viral (genetics), Real-Time Polymerase Chain Reaction (veterinary).
MESH :
- chemical , genetics : RNA, Viral.
- geographic : China.
- genetics : Influenza A Virus, H7N7 Subtype.
- isolation & purification : Influenza A Virus, H7N7 Subtype.
- veterinary : Real-Time Polymerase Chain Reaction.
- virology : Embryo, Nonmammalian, Feces, Geese, Influenza in Birds, Lakes, Poultry Diseases.
- Amino Acid Sequence, Animals, Genome, Viral, Molecular Sequence Data, Phylogeny.

Abstract

In March 2012, an H7N7 subtype avian influenza virus (AIV) named A/wild goose/Dongting/PC0360/2012 (H7N7) (DT/PC0360) was recovered from a wild goose in East Dongting Lake. We performed whole-genome sequencing of the isolate, and analyzed the phylogenetic and molecular characterization.

DOI: 10.3967/bes2015.074
PubMed: 26248736

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Le document en format XML

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<front><div type="abstract" xml:lang="en">In March 2012, an H7N7 subtype avian influenza virus (AIV) named A/wild goose/Dongting/PC0360/2012 (H7N7) (DT/PC0360) was recovered from a wild goose in East Dongting Lake. We performed whole-genome sequencing of the isolate, and analyzed the phylogenetic and molecular characterization.</div>
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<Month>12</Month>
<Day>14</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>06</Month>
<Day>08</Day>
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<Issue>7</Issue>
<PubDate><Year>2015</Year>
<Month>Jul</Month>
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<Title>Biomedical and environmental sciences : BES</Title>
<ISOAbbreviation>Biomed. Environ. Sci.</ISOAbbreviation>
</Journal>
<ArticleTitle>Phylogenetic and Molecular Analysis of an H7N7 Avian Influenza Virus Isolated in East Dongting Lake in 2012.</ArticleTitle>
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</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.3967/bes2015.074</ELocationID>
<Abstract><AbstractText Label="OBJECTIVE" NlmCategory="OBJECTIVE">In March 2012, an H7N7 subtype avian influenza virus (AIV) named A/wild goose/Dongting/PC0360/2012 (H7N7) (DT/PC0360) was recovered from a wild goose in East Dongting Lake. We performed whole-genome sequencing of the isolate, and analyzed the phylogenetic and molecular characterization.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">RNA was extracted from environment samples (including fecal samples from wild bird or domestic ducks, and water samples) for detecting the presence of Influenza A Virus targeting Matrix gene, using realtime RT-PCR assay. The positive samples were performed virus isolation with embryonated eggs. The subtype of the isolates were identified by RT-PCR assay with the H1-H16 and N1-N9 primer set. The whole-genome sequencing of isolates were performed. Phylogenetic and molecular characterizations of the eight genes of the isolates were analyzed.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">Our results suggested that all the eight gene segments of DT/PC0360 belonged to the Eurasian gene pool, and the HA gene were belonged to distinct sublineage with H7N9 AIV which caused outbreaks in Mainland China in 2013. The hemagglutinin cleavage site of HA of DT/PC0360 showed characterization of low pathogenic avian influenza virus.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Strengthening the surveillance of AIVs of wild waterfowl and poultry in this region is vital for our knowledge of the ecology and mechanism of transmission to prevent an influenza pandemic.</AbstractText>
<CopyrightInformation>Copyright © 2015 The Editorial Board of Biomedical and Environmental Sciences. Published by China CDC. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yao</LastName>
<ForeName>Yi</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Hunan East Dongting Lake National Nature Reserve, Yueyang 414018, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Cui Ling</ForeName>
<Initials>CL</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, China CDC, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing 102206, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shi</LastName>
<ForeName>Jing Hong</ForeName>
<Initials>JH</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, China CDC, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing 102206, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Yun</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Beijing Pediatric Research Institute, Beijing Children's Hospital, Capital Medical University, Beijing 100045, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yun Fei</ForeName>
<Initials>YF</Initials>
<AffiliationInfo><Affiliation>Hunan East Dongting Lake National Nature Reserve, Yueyang 414018, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bai</LastName>
<ForeName>Tian</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, China CDC, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing 102206, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Fang Cai</ForeName>
<Initials>FC</Initials>
<AffiliationInfo><Affiliation>Hunan Provincial Center for Disease Control and Prevention, Changsha 410005, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cai</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Hunan East Dongting Lake National Nature Reserve, Yueyang 414018, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yuan</LastName>
<ForeName>Fan</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>National Institute for Nutrition and Health, Chinese Center for Disease Control and Prevention, Beijing 100050, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Hunan East Dongting Lake National Nature Reserve, Yueyang 414018, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Hao</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Hunan Provincial Center for Disease Control and Prevention, Changsha 410005, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Wen Chao</ForeName>
<Initials>WC</Initials>
<AffiliationInfo><Affiliation>Hunan Provincial Center for Disease Control and Prevention, Changsha 410005, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Heng Jiao</ForeName>
<Initials>HJ</Initials>
<AffiliationInfo><Affiliation>Hunan Provincial Center for Disease Control and Prevention, Changsha 410005, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Hong</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Hunan Provincial Center for Disease Control and Prevention, Changsha 410005, Hunan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shu</LastName>
<ForeName>Yue Long</ForeName>
<Initials>YL</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, China CDC, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing 102206, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>China</Country>
<MedlineTA>Biomed Environ Sci</MedlineTA>
<NlmUniqueID>8909524</NlmUniqueID>
<ISSNLinking>0895-3988</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004625" MajorTopicYN="N">Embryo, Nonmammalian</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005243" MajorTopicYN="N">Feces</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005777" MajorTopicYN="N">Geese</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D053126" MajorTopicYN="N">Influenza A Virus, H7N7 Subtype</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060106" MajorTopicYN="N">Lakes</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Avian influenza viruses</Keyword>
<Keyword MajorTopicYN="N">East Dongting Lake wetland</Keyword>
<Keyword MajorTopicYN="N">H7N7 subtype</Keyword>
<Keyword MajorTopicYN="N">Wild geese</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year>
<Month>12</Month>
<Day>29</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>06</Month>
<Day>10</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>8</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>8</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>12</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">26248736</ArticleId>
<ArticleId IdType="doi">10.3967/bes2015.074</ArticleId>
<ArticleId IdType="pii">S0895-3988(15)30082-9</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>

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Phylogenetic and Molecular Analysis of an H7N7 Avian Influenza Virus Isolated in East Dongting Lake in 2012.

Phylogenetic and Molecular Analysis of an H7N7 Avian Influenza Virus Isolated in East Dongting Lake in 2012.

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