PandemieGrippaleV1, PubMed, Curation, bibRecord, 000516

Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.

Identifieur interne : 000516 ( PubMed/Curation ); précédent : 000515; suivant : 000517

Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.

Auteurs : Dinah Henritzi [Allemagne] ; Na Zhao [Allemagne] ; Elke Starick [Allemagne] ; Gaelle Simon [France] ; Jesper S. Krog [Danemark] ; Lars Erik Larsen [Danemark] ; Scott M. Reid [Royaume-Uni] ; Ian H. Brown [Royaume-Uni] ; Chiara Chiapponi [Italie] ; Emanuela Foni [Italie] ; Silke Wacheck [Allemagne] ; Peter Schmid [Allemagne] ; Martin Beer [Allemagne] ; Bernd Hoffmann [Allemagne] ; Timm C. Harder [Allemagne]

Source :

Influenza and other respiratory viruses [ 1750-2659 ] ; 2016.

RBID : pubmed:27397600

Descripteurs français

KwdFr :
- Amorces ADN (génétique), Animaux, Europe (épidémiologie), Grippe humaine (transmission), Grippe humaine (virologie), Grippe humaine (épidémiologie), Humains, Hémagglutinines (génétique), Infections à Orthomyxoviridae (diagnostic), Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Infections à Orthomyxoviridae (épidémiologie), Maladies des porcs (diagnostic), Maladies des porcs (virologie), Oiseaux (virologie), Réaction de polymérisation en chaine multiplex, Sialidase (génétique), Suidae, Virus de la grippe A (), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Épidémiosurveillance (médecine vétérinaire).
MESH :
- diagnostic : Infections à Orthomyxoviridae, Maladies des porcs.
- génétique : Amorces ADN, Hémagglutinines, Sialidase, Virus de la grippe A.
- isolement et purification : Virus de la grippe A.
- médecine vétérinaire : Infections à Orthomyxoviridae, Épidémiosurveillance.
- virologie : Grippe humaine, Infections à Orthomyxoviridae, Maladies des porcs, Oiseaux.
- épidémiologie : Europe, Grippe humaine, Infections à Orthomyxoviridae.
- Animaux, Humains, Réaction de polymérisation en chaine multiplex, Suidae, Virus de la grippe A.

English descriptors

KwdEn :
- Animals, Birds (virology), DNA Primers (genetics), Epidemiological Monitoring (veterinary), Europe (epidemiology), Hemagglutinins (genetics), Humans, Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza, Human (epidemiology), Influenza, Human (transmission), Influenza, Human (virology), Multiplex Polymerase Chain Reaction, Neuraminidase (genetics), Orthomyxoviridae Infections (diagnosis), Orthomyxoviridae Infections (epidemiology), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), Swine, Swine Diseases (diagnosis), Swine Diseases (virology).
MESH :
- chemical , genetics : DNA Primers, Hemagglutinins, Neuraminidase.
- classification : Influenza A virus.
- diagnosis : Orthomyxoviridae Infections, Swine Diseases.
- epidemiology : Europe, Influenza, Human, Orthomyxoviridae Infections.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- transmission : Influenza, Human.
- veterinary : Epidemiological Monitoring, Orthomyxoviridae Infections.
- virology : Birds, Influenza, Human, Orthomyxoviridae Infections, Swine Diseases.
- Animals, Humans, Multiplex Polymerase Chain Reaction, Swine.

Abstract

A diversifying pool of mammalian-adapted influenza A viruses (IAV) with largely unknown zoonotic potential is maintained in domestic swine populations worldwide. The most recent human influenza pandemic in 2009 was caused by a virus with genes originating from IAV isolated from swine. Swine influenza viruses (SIV) are widespread in European domestic pig populations and evolve dynamically. Knowledge regarding occurrence, spread and evolution of potentially zoonotic SIV in Europe is poorly understood.

DOI: 10.1111/irv.12407
PubMed: 27397600

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Le document en format XML

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<term>Orthomyxoviridae Infections</term>
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<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe humaine</term>
<term>Infections à Orthomyxoviridae</term>
<term>Maladies des porcs</term>
<term>Oiseaux</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birds</term>
<term>Influenza, Human</term>
<term>Orthomyxoviridae Infections</term>
<term>Swine Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Europe</term>
<term>Grippe humaine</term>
<term>Infections à Orthomyxoviridae</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Humans</term>
<term>Multiplex Polymerase Chain Reaction</term>
<term>Swine</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Humains</term>
<term>Réaction de polymérisation en chaine multiplex</term>
<term>Suidae</term>
<term>Virus de la grippe A</term>
</keywords>
</textClass>
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</teiHeader>
<front><div type="abstract" xml:lang="en">A diversifying pool of mammalian-adapted influenza A viruses (IAV) with largely unknown zoonotic potential is maintained in domestic swine populations worldwide. The most recent human influenza pandemic in 2009 was caused by a virus with genes originating from IAV isolated from swine. Swine influenza viruses (SIV) are widespread in European domestic pig populations and evolve dynamically. Knowledge regarding occurrence, spread and evolution of potentially zoonotic SIV in Europe is poorly understood.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27397600</PMID>
<DateCompleted><Year>2017</Year>
<Month>09</Month>
<Day>25</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>04</Month>
<Day>21</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1750-2659</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>10</Volume>
<Issue>6</Issue>
<PubDate><Year>2016</Year>
<Month>11</Month>
</PubDate>
</JournalIssue>
<Title>Influenza and other respiratory viruses</Title>
<ISOAbbreviation>Influenza Other Respir Viruses</ISOAbbreviation>
</Journal>
<ArticleTitle>Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.</ArticleTitle>
<Pagination><MedlinePgn>504-517</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/irv.12407</ELocationID>
<Abstract><AbstractText Label="BACKGROUND">A diversifying pool of mammalian-adapted influenza A viruses (IAV) with largely unknown zoonotic potential is maintained in domestic swine populations worldwide. The most recent human influenza pandemic in 2009 was caused by a virus with genes originating from IAV isolated from swine. Swine influenza viruses (SIV) are widespread in European domestic pig populations and evolve dynamically. Knowledge regarding occurrence, spread and evolution of potentially zoonotic SIV in Europe is poorly understood.</AbstractText>
<AbstractText Label="OBJECTIVES">Efficient SIV surveillance programmes depend on sensitive and specific diagnostic methods which allow for cost-effective large-scale analysis.</AbstractText>
<AbstractText Label="METHODS">New SIV haemagglutinin (HA) and neuraminidase (NA) subtype- and lineage-specific multiplex real-time RT-PCRs (RT-qPCR) have been developed and validated with reference virus isolates and clinical samples.</AbstractText>
<AbstractText Label="RESULTS">A diagnostic algorithm is proposed for the combined detection in clinical samples and subtyping of SIV strains currently circulating in Europe that is based on a generic, M-gene-specific influenza A virus RT-qPCR. In a second step, positive samples are examined by tetraplex HA- and triplex NA-specific RT-qPCRs to differentiate the porcine subtypes H1, H3, N1 and N2. Within the HA subtype H1, lineages "av" (European avian-derived), "hu" (European human-derived) and "pdm" (human pandemic A/H1N1, 2009) are distinguished by RT-qPCRs, and within the NA subtype N1, lineage "pdm" is differentiated. An RT-PCR amplicon Sanger sequencing method of small fragments of the HA and NA genes is also proposed to safeguard against failure of multiplex RT-qPCR subtyping.</AbstractText>
<AbstractText Label="CONCLUSIONS">These new multiplex RT-qPCR assays provide adequate tools for sustained SIV monitoring programmes in Europe.</AbstractText>
<CopyrightInformation>© 2016 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Henritzi</LastName>
<ForeName>Dinah</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhao</LastName>
<ForeName>Na</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Starick</LastName>
<ForeName>Elke</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Simon</LastName>
<ForeName>Gaelle</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Anses, Ploufragan-Plouzané Laboratory, Swine Virology Immunology Unit, Ploufragan, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Krog</LastName>
<ForeName>Jesper S</ForeName>
<Initials>JS</Initials>
<AffiliationInfo><Affiliation>National Veterinary Institute; Technical University of Denmark (DTU), Frederiksberg C, Denmark.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Larsen</LastName>
<ForeName>Lars Erik</ForeName>
<Initials>LE</Initials>
<AffiliationInfo><Affiliation>National Veterinary Institute; Technical University of Denmark (DTU), Frederiksberg C, Denmark.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Reid</LastName>
<ForeName>Scott M</ForeName>
<Initials>SM</Initials>
<AffiliationInfo><Affiliation>Department of Virology, Animal and Plant Health Agency-Weybridge, New Haw, Addlestone, Surrey, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Brown</LastName>
<ForeName>Ian H</ForeName>
<Initials>IH</Initials>
<AffiliationInfo><Affiliation>Department of Virology, Animal and Plant Health Agency-Weybridge, New Haw, Addlestone, Surrey, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chiapponi</LastName>
<ForeName>Chiara</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna, Parma, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Foni</LastName>
<ForeName>Emanuela</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna, Parma, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wacheck</LastName>
<ForeName>Silke</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>IDT Biologika GmbH, Dessau-Rosslau, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schmid</LastName>
<ForeName>Peter</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>IDT Biologika GmbH, Dessau-Rosslau, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Beer</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hoffmann</LastName>
<ForeName>Bernd</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Harder</LastName>
<ForeName>Timm C</ForeName>
<Initials>TC</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institute (FLI), Greifswald-Insel Riems, Germany. timm.harder@fli.de.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2016</Year>
<Month>08</Month>
<Day>09</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Influenza Other Respir Viruses</MedlineTA>
<NlmUniqueID>101304007</NlmUniqueID>
<ISSNLinking>1750-2640</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D006388">Hemagglutinins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>EC 3.2.1.18</RegistryNumber>
<NameOfSubstance UI="D009439">Neuraminidase</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005060" MajorTopicYN="N">Europe</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006388" MajorTopicYN="N">Hemagglutinins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060885" MajorTopicYN="N">Multiplex Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009439" MajorTopicYN="N">Neuraminidase</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009976" MajorTopicYN="N">Orthomyxoviridae Infections</DescriptorName>
<QualifierName UI="Q000175" MajorTopicYN="N">diagnosis</QualifierName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013552" MajorTopicYN="N">Swine</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013553" MajorTopicYN="N">Swine Diseases</DescriptorName>
<QualifierName UI="Q000175" MajorTopicYN="N">diagnosis</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">influenza A virus</Keyword>
<Keyword MajorTopicYN="Y">multiplex RT-qPCR</Keyword>
<Keyword MajorTopicYN="Y">subtyping</Keyword>
<Keyword MajorTopicYN="Y">surveillance</Keyword>
<Keyword MajorTopicYN="Y">swine</Keyword>
<Keyword MajorTopicYN="Y">zoonosis</Keyword>
</KeywordList>
</MedlineCitation>
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<Month>07</Month>
<Day>08</Day>
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<Day>12</Day>
<Hour>6</Hour>
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Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.

Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.

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