Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1).
Identifieur interne : 000A12 ( PubMed/Corpus ); précédent : 000A11; suivant : 000A13Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1).
Auteurs : Hao Song ; Qi Wang ; Yang Guo ; Shunai Liu ; Rui Song ; Xuesong Gao ; Li Dai ; Baoshun Li ; Deli Zhang ; Jun ChengSource :
- BMC infectious diseases [ 1471-2334 ] ; 2013.
English descriptors
- KwdEn :
- Adult, Cluster Analysis, Critical Illness, Female, Gene Expression Profiling, Gene Regulatory Networks, Host-Pathogen Interactions, Humans, Influenza A Virus, H1N1 Subtype (isolation & purification), Influenza, Human (genetics), Influenza, Human (metabolism), Influenza, Human (virology), Leukocytes, Mononuclear (metabolism), Male, MicroRNAs (biosynthesis), MicroRNAs (genetics), MicroRNAs (metabolism), Oligonucleotide Array Sequence Analysis, ROC Curve, Real-Time Polymerase Chain Reaction, Reproducibility of Results.
- MESH :
- chemical , biosynthesis : MicroRNAs.
- genetics : Influenza, Human, MicroRNAs.
- isolation & purification : Influenza A Virus, H1N1 Subtype.
- metabolism : Influenza, Human, Leukocytes, Mononuclear, MicroRNAs.
- virology : Influenza, Human.
- Adult, Cluster Analysis, Critical Illness, Female, Gene Expression Profiling, Gene Regulatory Networks, Host-Pathogen Interactions, Humans, Male, Oligonucleotide Array Sequence Analysis, ROC Curve, Real-Time Polymerase Chain Reaction, Reproducibility of Results.
Abstract
With concerns about the disastrous health and economic consequences caused by the influenza pandemic, comprehensively understanding the global host response to influenza virus infection is urgent. The role of microRNA (miRNA) has recently been highlighted in pathogen-host interactions. However, the precise role of miRNAs in the pathogenesis of influenza virus infection in humans, especially in critically ill patients is still unclear.
DOI: 10.1186/1471-2334-13-257
PubMed: 23731466
Links to Exploration step
pubmed:23731466Le document en format XML
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Guo</name></author><author><name sortKey="Liu, Shunai" sort="Liu, Shunai" uniqKey="Liu S" first="Shunai" last="Liu">Shunai Liu</name></author><author><name sortKey="Song, Rui" sort="Song, Rui" uniqKey="Song R" first="Rui" last="Song">Rui Song</name></author><author><name sortKey="Gao, Xuesong" sort="Gao, Xuesong" uniqKey="Gao X" first="Xuesong" last="Gao">Xuesong Gao</name></author><author><name sortKey="Dai, Li" sort="Dai, Li" uniqKey="Dai L" first="Li" last="Dai">Li Dai</name></author><author><name sortKey="Li, Baoshun" sort="Li, Baoshun" uniqKey="Li B" first="Baoshun" last="Li">Baoshun Li</name></author><author><name sortKey="Zhang, Deli" sort="Zhang, Deli" uniqKey="Zhang D" first="Deli" last="Zhang">Deli Zhang</name></author><author><name sortKey="Cheng, Jun" sort="Cheng, Jun" uniqKey="Cheng J" first="Jun" last="Cheng">Jun Cheng</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno 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712100, China.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Qi" sort="Wang, Qi" uniqKey="Wang Q" first="Qi" last="Wang">Qi Wang</name></author><author><name sortKey="Guo, Yang" sort="Guo, Yang" uniqKey="Guo Y" first="Yang" last="Guo">Yang Guo</name></author><author><name sortKey="Liu, Shunai" sort="Liu, Shunai" uniqKey="Liu S" first="Shunai" last="Liu">Shunai Liu</name></author><author><name sortKey="Song, Rui" sort="Song, Rui" uniqKey="Song R" first="Rui" last="Song">Rui Song</name></author><author><name sortKey="Gao, Xuesong" sort="Gao, Xuesong" uniqKey="Gao X" first="Xuesong" last="Gao">Xuesong Gao</name></author><author><name sortKey="Dai, Li" sort="Dai, Li" uniqKey="Dai L" first="Li" last="Dai">Li Dai</name></author><author><name sortKey="Li, Baoshun" sort="Li, Baoshun" uniqKey="Li B" first="Baoshun" last="Li">Baoshun Li</name></author><author><name sortKey="Zhang, Deli" sort="Zhang, Deli" uniqKey="Zhang D" first="Deli" last="Zhang">Deli Zhang</name></author><author><name sortKey="Cheng, Jun" sort="Cheng, Jun" uniqKey="Cheng J" first="Jun" last="Cheng">Jun Cheng</name></author></analytic><series><title level="j">BMC infectious diseases</title><idno type="eISSN">1471-2334</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adult</term><term>Cluster Analysis</term><term>Critical Illness</term><term>Female</term><term>Gene Expression Profiling</term><term>Gene Regulatory Networks</term><term>Host-Pathogen Interactions</term><term>Humans</term><term>Influenza A Virus, H1N1 Subtype (isolation & purification)</term><term>Influenza, Human (genetics)</term><term>Influenza, Human (metabolism)</term><term>Influenza, Human (virology)</term><term>Leukocytes, Mononuclear (metabolism)</term><term>Male</term><term>MicroRNAs (biosynthesis)</term><term>MicroRNAs (genetics)</term><term>MicroRNAs (metabolism)</term><term>Oligonucleotide Array Sequence Analysis</term><term>ROC Curve</term><term>Real-Time Polymerase Chain Reaction</term><term>Reproducibility of Results</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>MicroRNAs</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza, Human</term><term>MicroRNAs</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H1N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Influenza, Human</term><term>Leukocytes, Mononuclear</term><term>MicroRNAs</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adult</term><term>Cluster Analysis</term><term>Critical Illness</term><term>Female</term><term>Gene Expression Profiling</term><term>Gene Regulatory Networks</term><term>Host-Pathogen Interactions</term><term>Humans</term><term>Male</term><term>Oligonucleotide Array Sequence Analysis</term><term>ROC Curve</term><term>Real-Time Polymerase Chain Reaction</term><term>Reproducibility of Results</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">With concerns about the disastrous health and economic consequences caused by the influenza pandemic, comprehensively understanding the global host response to influenza virus infection is urgent. The role of microRNA (miRNA) has recently been highlighted in pathogen-host interactions. However, the precise role of miRNAs in the pathogenesis of influenza virus infection in humans, especially in critically ill patients is still unclear.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23731466</PMID><DateCompleted><Year>2014</Year><Month>03</Month><Day>03</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>01</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2334</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><PubDate><Year>2013</Year><Month>Jun</Month><Day>03</Day></PubDate></JournalIssue><Title>BMC infectious diseases</Title><ISOAbbreviation>BMC Infect. Dis.</ISOAbbreviation></Journal><ArticleTitle>Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1).</ArticleTitle><Pagination><MedlinePgn>257</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2334-13-257</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">With concerns about the disastrous health and economic consequences caused by the influenza pandemic, comprehensively understanding the global host response to influenza virus infection is urgent. The role of microRNA (miRNA) has recently been highlighted in pathogen-host interactions. However, the precise role of miRNAs in the pathogenesis of influenza virus infection in humans, especially in critically ill patients is still unclear.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">We identified cellular miRNAs involved in the host response to influenza virus infection by performing comprehensive miRNA profiling in peripheral blood mononuclear cells (PBMCs) from critically ill patients with swine-origin influenza pandemic H1N1 (2009) virus infection via miRNA microarray and quantitative reverse-transcription polymerase chain reaction (qRT-PCR) assays. Receiver operator characteristic (ROC) curve analysis was conducted and area under the ROC curve (AUC) was calculated to evaluate the diagnostic accuracy of severe H1N1 influenza virus infection. Furthermore, an integrative network of miRNA-mediated host-influenza virus protein interactions was constructed by integrating the predicted and validated miRNA-gene interaction data with influenza virus and host-protein-protein interaction information using Cytoscape software. Moreover, several hub genes in the network were selected and validated by qRT-PCR.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Forty-one significantly differentially expressed miRNAs were found by miRNA microarray; nine were selected and validated by qRT-PCR. QRT-PCR assay and ROC curve analyses revealed that miR-31, miR-29a and miR-148a all had significant potential diagnostic value for critically ill patients infected with H1N1 influenza virus, which yielded AUC of 0.9510, 0.8951 and 0.8811, respectively. We subsequently constructed an integrative network of miRNA-mediated host-influenza virus protein interactions, wherein we found that miRNAs are involved in regulating important pathways, such as mitogen-activated protein kinase signaling pathway, epidermal growth factor receptor signaling pathway, and Toll-like receptor signaling pathway, during influenza virus infection. Some of differentially expressed miRNAs via in silico analysis targeted mRNAs of several key genes in these pathways. The mRNA expression level of tumor protein T53 and transforming growth factor beta receptor 1 were found significantly reduced in critically ill patients, whereas the expression of Janus kinase 2, caspase 3 apoptosis-related cysteine peptidase, interleukin 10, and myxovirus resistance 1 were extremely increased in critically ill patients.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our data suggest that the dysregulation of miRNAs in the PBMCs of H1N1 critically ill patients can regulate a number of key genes in the major signaling pathways associated with influenza virus infection. These differentially expressed miRNAs could be potential therapeutic targets or biomarkers for severe influenza virus infection.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Hao</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>MOA Key Laboratory of Animal Biotechnology of National Ministry of Agriculture, Institute of Veterinary Immunology, and Research Laboratory of Virology, Immunology & Bioinformatics, Division of Veterinary Microbiology & Virology, Department of Preventive Veterinary Medicine, College of Veterinary Medicine, Northwest A & F University, Yangling, Xi'an City, Shaanxi Province, 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Qi</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Yang</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Shunai</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Rui</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Xuesong</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Li</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Baoshun</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Deli</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Jun</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>06</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Infect Dis</MedlineTA><NlmUniqueID>100968551</NlmUniqueID><ISSNLinking>1471-2334</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016638" MajorTopicYN="N">Critical Illness</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053263" MajorTopicYN="N">Gene Regulatory Networks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053118" MajorTopicYN="N">Influenza A Virus, H1N1 Subtype</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007963" MajorTopicYN="N">Leukocytes, Mononuclear</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000096" MajorTopicYN="Y">biosynthesis</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012372" MajorTopicYN="N">ROC Curve</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2012</Year><Month>09</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>05</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>3</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23731466</ArticleId><ArticleId IdType="pii">1471-2334-13-257</ArticleId><ArticleId IdType="doi">10.1186/1471-2334-13-257</ArticleId><ArticleId 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