A continuous peptide epitope reacting with pandemic influenza AH1N1 predicted by bioinformatic approaches.
Identifieur interne : 000692 ( PubMed/Corpus ); précédent : 000691; suivant : 000693A continuous peptide epitope reacting with pandemic influenza AH1N1 predicted by bioinformatic approaches.
Auteurs : Jonathan P. Carrillo-Vazquez ; José Correa-Basurto ; Jazmin García-Machorro ; Rafael Campos-Rodríguez ; Violaine Moreau ; Jorge L. Rosas-Trigueros ; Cesar A. Reyes-L Pez ; Marlon Rojas-L Pez ; Absalom Zamorano-CarrilloSource :
- Journal of molecular recognition : JMR [ 1099-1352 ] ; 2015.
English descriptors
- KwdEn :
- Animals, Antibodies (immunology), Cell Line, Computational Biology, Dogs, Epitopes (metabolism), Hemagglutinin Glycoproteins, Influenza Virus (chemistry), Hemagglutinin Glycoproteins, Influenza Virus (metabolism), Humans, Influenza, Human (immunology), Influenza, Human (metabolism), Molecular Dynamics Simulation, Peptides (chemistry), Peptides (metabolism), Rabbits.
- MESH :
- chemical , chemistry : Hemagglutinin Glycoproteins, Influenza Virus, Peptides.
- chemical , immunology : Antibodies.
- chemical , metabolism : Epitopes, Hemagglutinin Glycoproteins, Influenza Virus, Peptides.
- immunology : Influenza, Human.
- metabolism : Influenza, Human.
- Animals, Cell Line, Computational Biology, Dogs, Humans, Molecular Dynamics Simulation, Rabbits.
Abstract
Computational identification of potential epitopes with an immunogenic capacity challenges immunological research. Several methods show considerable success, and together with experimental studies, the efficiency of the algorithms to identify potential peptides with biological activity has improved. Herein, an epitope was designed by combining bioinformatics, docking, and molecular dynamics simulations. The hemagglutinin protein of the H1N1 influenza pandemic strain served as a template, owing to the interest of obtaining a scheme of immunization. Afterward, we performed enzyme-linked immunosorbent assay (ELISA) using the epitope to analyze if any antibodies in human sera before and after the influenza outbreak in 2009 recognize this peptide. Also, a plaque reduction neutralization test induced by virus-neutralizing antibodies and the IgG determination showed the biological activity of this computationally designed peptide. The results of the ELISAs demonstrated that the serum of both prepandemic and pandemic recognized the epitope. Moreover, the plaque reduction neutralization test evidenced the capacity of the designed peptide to neutralize influenza virus in Madin-Darby canine cells.
DOI: 10.1002/jmr.2470
PubMed: 25788327
Links to Exploration step
pubmed:25788327Le document en format XML
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Carrillo-Vazquez</name><affiliation><nlm:affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Correa Basurto, Jose" sort="Correa Basurto, Jose" uniqKey="Correa Basurto J" first="José" last="Correa-Basurto">José Correa-Basurto</name><affiliation><nlm:affiliation>Laboratorio de Modelado Molecular y Diseño de Fármacos, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Garcia Machorro, Jazmin" sort="Garcia Machorro, Jazmin" uniqKey="Garcia Machorro J" first="Jazmin" last="García-Machorro">Jazmin García-Machorro</name><affiliation><nlm:affiliation>Laboratorio de Medicina de Conservación, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Campos Rodriguez, Rafael" sort="Campos Rodriguez, Rafael" uniqKey="Campos Rodriguez R" first="Rafael" last="Campos-Rodríguez">Rafael Campos-Rodríguez</name><affiliation><nlm:affiliation>Laboratorio de Inmunología Molecular, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Moreau, Violaine" sort="Moreau, Violaine" uniqKey="Moreau V" first="Violaine" last="Moreau">Violaine Moreau</name><affiliation><nlm:affiliation>CNRS FRE 3009, SysDiag, CAP DELTA, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Rosas Trigueros, Jorge L" sort="Rosas Trigueros, Jorge L" uniqKey="Rosas Trigueros J" first="Jorge L" last="Rosas-Trigueros">Jorge L. 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Carrillo-Vazquez</name><affiliation><nlm:affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Correa Basurto, Jose" sort="Correa Basurto, Jose" uniqKey="Correa Basurto J" first="José" last="Correa-Basurto">José Correa-Basurto</name><affiliation><nlm:affiliation>Laboratorio de Modelado Molecular y Diseño de Fármacos, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Garcia Machorro, Jazmin" sort="Garcia Machorro, Jazmin" uniqKey="Garcia Machorro J" first="Jazmin" last="García-Machorro">Jazmin García-Machorro</name><affiliation><nlm:affiliation>Laboratorio de Medicina de Conservación, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Campos Rodriguez, Rafael" sort="Campos Rodriguez, Rafael" uniqKey="Campos Rodriguez R" first="Rafael" last="Campos-Rodríguez">Rafael Campos-Rodríguez</name><affiliation><nlm:affiliation>Laboratorio de Inmunología Molecular, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Moreau, Violaine" sort="Moreau, Violaine" uniqKey="Moreau V" first="Violaine" last="Moreau">Violaine Moreau</name><affiliation><nlm:affiliation>CNRS FRE 3009, SysDiag, CAP DELTA, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Rosas Trigueros, Jorge L" sort="Rosas Trigueros, Jorge L" uniqKey="Rosas Trigueros J" first="Jorge L" last="Rosas-Trigueros">Jorge L. Rosas-Trigueros</name><affiliation><nlm:affiliation>Laboratorio Transdisciplinario de Investigación en Sistemas Evolutivos SEPI-ESCOM-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Reyes L Pez, Cesar A" sort="Reyes L Pez, Cesar A" uniqKey="Reyes L Pez C" first="Cesar A" last="Reyes-L Pez">Cesar A. Reyes-L Pez</name><affiliation><nlm:affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Rojas L Pez, Marlon" sort="Rojas L Pez, Marlon" uniqKey="Rojas L Pez M" first="Marlon" last="Rojas-L Pez">Marlon Rojas-L Pez</name><affiliation><nlm:affiliation>Centro de Investigación en Biotecnología Aplicada-IPN, Tlaxcala, Mexico.</nlm:affiliation></affiliation></author><author><name sortKey="Zamorano Carrillo, Absalom" sort="Zamorano Carrillo, Absalom" uniqKey="Zamorano Carrillo A" first="Absalom" last="Zamorano-Carrillo">Absalom Zamorano-Carrillo</name><affiliation><nlm:affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Journal of molecular recognition : JMR</title><idno type="eISSN">1099-1352</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Antibodies (immunology)</term><term>Cell Line</term><term>Computational Biology</term><term>Dogs</term><term>Epitopes (metabolism)</term><term>Hemagglutinin Glycoproteins, Influenza Virus (chemistry)</term><term>Hemagglutinin Glycoproteins, Influenza Virus (metabolism)</term><term>Humans</term><term>Influenza, Human (immunology)</term><term>Influenza, Human (metabolism)</term><term>Molecular Dynamics Simulation</term><term>Peptides (chemistry)</term><term>Peptides (metabolism)</term><term>Rabbits</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Hemagglutinin Glycoproteins, Influenza Virus</term><term>Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="immunology" xml:lang="en"><term>Antibodies</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Epitopes</term><term>Hemagglutinin Glycoproteins, Influenza Virus</term><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Cell Line</term><term>Computational Biology</term><term>Dogs</term><term>Humans</term><term>Molecular Dynamics Simulation</term><term>Rabbits</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Computational identification of potential epitopes with an immunogenic capacity challenges immunological research. Several methods show considerable success, and together with experimental studies, the efficiency of the algorithms to identify potential peptides with biological activity has improved. Herein, an epitope was designed by combining bioinformatics, docking, and molecular dynamics simulations. The hemagglutinin protein of the H1N1 influenza pandemic strain served as a template, owing to the interest of obtaining a scheme of immunization. Afterward, we performed enzyme-linked immunosorbent assay (ELISA) using the epitope to analyze if any antibodies in human sera before and after the influenza outbreak in 2009 recognize this peptide. Also, a plaque reduction neutralization test induced by virus-neutralizing antibodies and the IgG determination showed the biological activity of this computationally designed peptide. The results of the ELISAs demonstrated that the serum of both prepandemic and pandemic recognized the epitope. Moreover, the plaque reduction neutralization test evidenced the capacity of the designed peptide to neutralize influenza virus in Madin-Darby canine cells.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25788327</PMID><DateCompleted><Year>2016</Year><Month>05</Month><Day>03</Day></DateCompleted><DateRevised><Year>2015</Year><Month>08</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1099-1352</ISSN><JournalIssue CitedMedium="Internet"><Volume>28</Volume><Issue>9</Issue><PubDate><Year>2015</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Journal of molecular recognition : JMR</Title><ISOAbbreviation>J. Mol. Recognit.</ISOAbbreviation></Journal><ArticleTitle>A continuous peptide epitope reacting with pandemic influenza AH1N1 predicted by bioinformatic approaches.</ArticleTitle><Pagination><MedlinePgn>553-64</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/jmr.2470</ELocationID><Abstract><AbstractText>Computational identification of potential epitopes with an immunogenic capacity challenges immunological research. Several methods show considerable success, and together with experimental studies, the efficiency of the algorithms to identify potential peptides with biological activity has improved. Herein, an epitope was designed by combining bioinformatics, docking, and molecular dynamics simulations. The hemagglutinin protein of the H1N1 influenza pandemic strain served as a template, owing to the interest of obtaining a scheme of immunization. Afterward, we performed enzyme-linked immunosorbent assay (ELISA) using the epitope to analyze if any antibodies in human sera before and after the influenza outbreak in 2009 recognize this peptide. Also, a plaque reduction neutralization test induced by virus-neutralizing antibodies and the IgG determination showed the biological activity of this computationally designed peptide. The results of the ELISAs demonstrated that the serum of both prepandemic and pandemic recognized the epitope. Moreover, the plaque reduction neutralization test evidenced the capacity of the designed peptide to neutralize influenza virus in Madin-Darby canine cells.</AbstractText><CopyrightInformation>Copyright © 2015 John Wiley & Sons, Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Carrillo-Vazquez</LastName><ForeName>Jonathan P</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Correa-Basurto</LastName><ForeName>José</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Laboratorio de Modelado Molecular y Diseño de Fármacos, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>García-Machorro</LastName><ForeName>Jazmin</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Laboratorio de Medicina de Conservación, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Campos-Rodríguez</LastName><ForeName>Rafael</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Laboratorio de Inmunología Molecular, Escuela Superior de Medicina-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moreau</LastName><ForeName>Violaine</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>CNRS FRE 3009, SysDiag, CAP DELTA, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rosas-Trigueros</LastName><ForeName>Jorge L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Laboratorio Transdisciplinario de Investigación en Sistemas Evolutivos SEPI-ESCOM-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reyes-López</LastName><ForeName>Cesar A</ForeName><Initials>CA</Initials><AffiliationInfo><Affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rojas-López</LastName><ForeName>Marlon</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Centro de Investigación en Biotecnología Aplicada-IPN, Tlaxcala, Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zamorano-Carrillo</LastName><ForeName>Absalom</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratorio de Bioquímica y Biofísica Computacional, Doctorado en Biotecnología ENMH-IPN, Mexico, D.F., Mexico.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>J Mol Recognit</MedlineTA><NlmUniqueID>9004580</NlmUniqueID><ISSNLinking>0952-3499</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000906">Antibodies</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000939">Epitopes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C543345">H1N1 virus hemagglutinin</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019267">Hemagglutinin Glycoproteins, Influenza Virus</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010455">Peptides</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000906" MajorTopicYN="N">Antibodies</DescriptorName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002460" MajorTopicYN="N">Cell Line</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019295" MajorTopicYN="N">Computational Biology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004285" MajorTopicYN="N">Dogs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000939" MajorTopicYN="N">Epitopes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019267" MajorTopicYN="N">Hemagglutinin Glycoproteins, Influenza Virus</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D056004" MajorTopicYN="N">Molecular Dynamics Simulation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010455" MajorTopicYN="N">Peptides</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011817" MajorTopicYN="N">Rabbits</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bioinformatic</Keyword><Keyword MajorTopicYN="N">Influenza</Keyword><Keyword MajorTopicYN="N">Peptide</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>08</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>12</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>01</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>5</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25788327</ArticleId><ArticleId 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