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Viral factors in influenza pandemic risk assessment.

Identifieur interne : 000455 ( PubMed/Checkpoint ); précédent : 000454; suivant : 000456

Viral factors in influenza pandemic risk assessment.

Auteurs : Marc Lipsitch [États-Unis] ; Wendy Barclay [Royaume-Uni] ; Rahul Raman [États-Unis] ; Charles J. Russell [États-Unis] ; Jessica A. Belser [États-Unis] ; Sarah Cobey [États-Unis] ; Peter M. Kasson [États-Unis] ; James O. Lloyd-Smith [États-Unis] ; Sebastian Maurer-Stroh [Singapour] ; Steven Riley [Royaume-Uni] ; Catherine Aa Beauchemin [Canada] ; Trevor Bedford [États-Unis] ; Thomas C. Friedrich [États-Unis] ; Andreas Handel [États-Unis] ; Sander Herfst [Pays-Bas] ; Pablo R. Murcia [Royaume-Uni] ; Benjamin Roche [France] ; Claus O. Wilke [États-Unis] ; Colin A. Russell [Royaume-Uni]

Source :

RBID : pubmed:27834632

Descripteurs français

English descriptors

Abstract

The threat of an influenza A virus pandemic stems from continual virus spillovers from reservoir species, a tiny fraction of which spark sustained transmission in humans. To date, no pandemic emergence of a new influenza strain has been preceded by detection of a closely related precursor in an animal or human. Nonetheless, influenza surveillance efforts are expanding, prompting a need for tools to assess the pandemic risk posed by a detected virus. The goal would be to use genetic sequence and/or biological assays of viral traits to identify those non-human influenza viruses with the greatest risk of evolving into pandemic threats, and/or to understand drivers of such evolution, to prioritize pandemic prevention or response measures. We describe such efforts, identify progress and ongoing challenges, and discuss three specific traits of influenza viruses (hemagglutinin receptor binding specificity, hemagglutinin pH of activation, and polymerase complex efficiency) that contribute to pandemic risk.

DOI: 10.7554/eLife.18491
PubMed: 27834632


Affiliations:


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pubmed:27834632

Le document en format XML

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<div type="abstract" xml:lang="en">The threat of an influenza A virus pandemic stems from continual virus spillovers from reservoir species, a tiny fraction of which spark sustained transmission in humans. To date, no pandemic emergence of a new influenza strain has been preceded by detection of a closely related precursor in an animal or human. Nonetheless, influenza surveillance efforts are expanding, prompting a need for tools to assess the pandemic risk posed by a detected virus. The goal would be to use genetic sequence and/or biological assays of viral traits to identify those non-human influenza viruses with the greatest risk of evolving into pandemic threats, and/or to understand drivers of such evolution, to prioritize pandemic prevention or response measures. We describe such efforts, identify progress and ongoing challenges, and discuss three specific traits of influenza viruses (hemagglutinin receptor binding specificity, hemagglutinin pH of activation, and polymerase complex efficiency) that contribute to pandemic risk.</div>
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<CoiStatement>ML: Reports the following financial disclosures for topics unrelated to this manuscript: consulting income from Pfizer and Affinivax (both donated to charity) and research funding from Pfizer and PATH Vaccine Solutions. These entities had no role in the preparation of this work or in the decision to submit the work for publication. Reviewing editor for eLife. CAR: During the prepartion of this manuscript, CAAB received funding through a research contract with AstraZeneca Inc., but for distinct, unrelated research. AstraZeneca Inc. had no role in the preparation of this work or in the decision to submit the work for publication. The other authors declare that no competing interests exist.</CoiStatement>
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<Reference>
<Citation>J Gen Virol. 2015 May;96(Pt 5):975-81</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25604926</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Sci Rep. 2011;1:200</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22355715</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2013 Feb;9(2):e1003151</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23459660</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Pan Afr Med J. 2014 Oct 01;19:121</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25745529</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Elife. 2014 Jul 08;3:null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25006036</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2014 Dec 12;5(6):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25505125</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Infect Dis. 2015 May 1;211(9):1399-407</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25355942</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Gen Virol. 2013 Jun;94(Pt 6):1220-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23486663</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Opin Chem Biol. 2004 Dec;8(6):617-25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15556405</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Microbiol Rev. 1992 Mar;56(1):152-79</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">1579108</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2012 Jun 22;336(6088):1506; author reply 1506</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22723396</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2012 Mar 28;483(7391):520-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22460875</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2015 Aug 15;61(4):563-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25940354</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Zoonoses Public Health. 2012 May;59(3):155-63</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21914152</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2015 Dec 30;90(6):2981-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26719265</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2014 Jun 17;5:4116</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24937647</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Top Microbiol Immunol. 2014;385:93-116</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25007844</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2010 Jun 4;328(5983):1272-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20522774</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2015 Jun;89(11):5935-48</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25810540</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol Methods. 1992 Sep;39(1-2):111-23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">1430058</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2211-3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22308474</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2016 Jan 12;17:46</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26754751</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods Enzymol. 1987;138:162-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3600320</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2013 Mar;9(3):e1003223</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23516363</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2011 Jan 18;6(1):e14555</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21267441</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2006 Jul 27;442(7101):448-52</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16642006</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Curr. 2010 Jun 01;2:RRN1162</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20535229</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Am Chem Soc. 2009 Aug 19;131(32):11338-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19637916</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Vet Microbiol. 2015 Feb 25;175(2-4):356-61</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25575877</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Elife. 2013 May 14;2:e00631</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23682315</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1980 Dec;107(2):313-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7456332</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013;8(1):e55358</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23383167</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2010 Dec;16(12):1827-34</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21122209</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2010 Sep 02;6(9):e1001081</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20824086</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2012 Mar 23;335(6075):1463</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22362880</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virol J. 2015 Sep 04;12:134</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26336880</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2015 May 28;11(5):e1004940</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26020774</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2011 Dec;17(12):2319-21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22172127</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2011 Apr 07;6(4):e18577</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21490925</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2013;9(10):e1003657</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24130481</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2012;8(12):e1003019</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23236273</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2006 Apr 21;312(5772):394-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16627737</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2006 Sep;12(9):1353-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17073083</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2014 Sep 1;88(17):10110-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24965467</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2009 Dec 30;4(12):e8495</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20041119</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2014 Sep;20(9):1580-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25153690</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2015 Jan 23;6(1):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25616376</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17033-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15563589</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Jul;84(13):6825-33</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20392847</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Elife. 2015 Sep 02;4:null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26329460</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Viruses. 2012 Jul;4(7):1144-68</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22852045</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2014 Jan;10(1):e1003831</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24391498</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2015 Jan 8;517(7533):128-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25567260</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2010 Jun 21;5(6):e11158</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20574518</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2012 Oct;86(19):10651-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22837199</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Methods. 2014 Aug;11(8):801-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25075907</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2009 Sep;27(9):797-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19741625</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2014 Dec 18;516(7531):361-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25409151</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 2003 May 10;309(2):209-18</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12758169</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Microbiol. 2006 Nov;4(11):857-64</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17013397</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2013 May 16;368(20):1888-97</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23577628</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods Enzymol. 1993;220:261-76</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8394492</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 Sep;87(17):9911-22</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23824818</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 Dec;87(24):13343-53</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24089563</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Host Microbe. 2014 Feb 12;15(2):239-47</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24528869</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 1993 Apr;67(4):1761-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8445709</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17175-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19805083</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2008;3(12):e3904</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19066626</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 2006 Feb 3;355(5):1143-55</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16343533</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2015 Jan 23;6(1):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25616377</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1997 Jan 20;227(2):493-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9018149</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Med. 2006 Jun;3(6):e135</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17214503</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virus Evol. 2016 Feb 14;2(1):vev025</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27774294</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Host Microbe. 2016 Feb 10;19(2):169-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26867176</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Aug;84(16):8287-99</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20519409</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21474-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23236176</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet. 2014 Feb 22;383(9918):714-21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24507376</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Clin Microbiol. 2011 Feb;49(2):715-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21106781</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Med. 2013 Nov;10(11):e1001558</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24302890</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Philos Trans R Soc Lond B Biol Sci. 2013 Feb 04;368(1614):20120334</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23382434</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Philos Trans R Soc Lond B Biol Sci. 2013 Feb 04;368(1614):20120333</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23382433</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2013 Dec;57(12):1703-12</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24065322</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Vaccine. 1995;13(15):1468-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8578828</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2015 Jul 30;373(5):487-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26222578</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Genet. 2010 Dec;11(12):867-79</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21085205</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2008 Jul;14(7):e1</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18598616</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO J. 1990 Jan;9(1):17-24</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2295311</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2000 Sep;74(18):8502-12</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10954551</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2011 Mar 4;144(5):646-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21376230</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8107-12</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24778238</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 2014 Oct 10;289(41):28489-504</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25135641</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Intervirology. 1979;11(1):66-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">429143</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biophys J. 2016 Jun 7;110(11):2293-301</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27276248</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Infect Public Health. 2013 Apr;6(2):69-79</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23537819</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):1636-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26811446</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2003 Jun 20;300(5627):1966-70</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12766207</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virus Res. 2013 Dec 5;178(1):99-113</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23619279</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2008 Sep 25;455(7212):532-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18716625</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Eur J Cell Biol. 2015 Jul-Sep;94(7-9):368-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26074198</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2016 Jan 7;529(7584):101-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26738596</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2011 Mar 24;6(3):e14767</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21455300</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2010 Aug 05;6(8):e1001034</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20700447</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>R Soc Open Sci. 2015 Sep 09;2(9):150173</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26473042</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2012 Jun 22;336(6088):1534-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22723413</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2014 Dec 12;5(6):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25505124</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>One Health. 2015 Dec 1;1:1-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26309905</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2010 May 18;1(1):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20689744</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Biochem. 1986;55:663-700</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2874766</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Sep 27;8(9):e76047</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24086684</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Feb;84(4):1715-21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20007271</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2015 Jun;89(12):6218-26</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25833052</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1994 Nov 15;205(1):17-23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7975212</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Public Health. 2011 Feb 25;11 Suppl 1:S7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21356136</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2014 Dec;32(12):1250-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25402615</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2014 Jun 15;30(12):i185-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24931982</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1989 Nov;173(1):317-22</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2815586</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2011 Jan 24;6(1):e14582</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21283678</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 May;87(10):5949-58</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23514882</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2010 Apr 1;464(7289):678</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20360718</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 1990 Nov;64(11):5669-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2214032</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2014 Sep 15;59(6):e76-83</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24867786</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Future Microbiol. 2013 Aug;8(8):961-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23902143</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1996 Mar 15;217(2):452-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8610436</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 2012 Aug;29(8):2063-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22427709</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Med. 2006 Oct;12(10):1203-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16964257</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Respir Med. 2013 Dec;1(10):771-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24461756</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2009 Apr;83(8):3568-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19193808</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2005 Sep;79(17):11533-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16103207</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2014 Oct 15;30(20):2981-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24996895</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Epidemics. 2015 Mar;10:35-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25843380</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Elife. 2016 Apr 15;5:e12217</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27113719</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virus Evol. 2016 Jul;2(2):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27713835</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Vaccine. 2015 Feb 25;33(9):1102-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25604801</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2008 Jan;26(1):107-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18176555</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1997 Jun 9;232(2):345-50</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9191848</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Feb;84(3):1527-35</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19923184</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2008 May 27;105(21):7558-63</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18508975</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Med. 2006 Jun;3(6):e212</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16640458</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Respir Med. 2013 Sep;1(7):534-42</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24461614</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2013 Nov 22;342(6161):976-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24264991</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 Oct;87(19):10539-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23864615</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2012;8(11):e1003059</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23209422</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Glycoconj J. 2006 Feb;23(1-2):85-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16575525</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Curr. 2014 Mar 07;6:null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24619563</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Rev Sci Tech. 2009 Apr;28(1):161-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19618624</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 1994 Sep 1;371(6492):37-43</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8072525</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Pac Symp Biocomput. 2009;:492-503</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19209725</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Wildl Dis. 2011 Jul;47(3):566-78</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21719821</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2013;4:2636</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24149915</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Epidemics. 2015 Mar;10:45-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25843382</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2014 Nov;88(21):12374-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25122789</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2012 May 01;3:802</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22549831</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2006 Mar 23;440(7083):435-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16554799</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Influenza Other Respir Viruses. 2015 Sep;9(5):271-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25966311</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Clin Microbiol. 2005 Nov;43(11):5760-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16272514</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Avian Dis. 2010 Mar;54(1 Suppl):394-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20521668</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2013 Jul 25;499(7459):496-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23787694</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 2001 Mar 15;281(2):156-62</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11277689</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Epidemiol Infect. 2015 Oct;143(14):2965-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25761403</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Apr;84(8):3752-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20130063</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Biochem. 2000;69:531-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10966468</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14264-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21825167</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2012 Jun 22;336(6088):1541-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22723414</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 2009 Mar 27;387(2):465-91</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19356594</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2014 Jan;88(1):768-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24173215</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2014 Apr 10;157(2):329-39</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24725402</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2014 Dec 17;5:5750</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25517696</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Gen Virol. 2009 Jun;90(Pt 6):1398-407</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19264657</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Bioinformatics. 2015 May 20;16:168</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25990960</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 1977 Aug 18;268(5621):650-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">895862</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2007 Feb 2;315(5812):655-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17272724</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2015 Apr 08;6:6553</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25850788</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Sci Transl Med. 2015 Dec 2;7(316):316ra192</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26631631</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2013 May 16;497(7449):392-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23615615</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Gen Virol. 2012 Jan;93(Pt 1):113-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21918006</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 May;87(9):4826-34</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23449784</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2006 Nov 16;444(7117):378-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17108965</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2013 Oct 17;502(7471):333-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24132290</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2013 Sep;87(18):9983-96</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23843645</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18590-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16339318</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Genet. 2011 Feb;7(2):e1001301</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21390205</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 2006 Jan 20;344(2):432-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16226289</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virol J. 2013 Sep 05;10:276</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24007444</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2014 Feb;88(3):1694-702</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24257603</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 2012 Jan 5;422(1):105-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22056389</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1991 Jan;180(1):10-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">1984642</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2014 Nov 10;9(11):e112462</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25383873</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2014 Nov 20;10(11):e1004508</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25411973</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14306-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9405608</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Infect Genet Evol. 2016 Jun;40:236-42</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26973295</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Vaccine. 1985 Sep;3(3 Suppl):215-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">4060851</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2015 May;21(5):852-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25897624</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2012 May 02;486(7403):420-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22722205</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Genet. 2014 May 08;10(5):e1004328</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24811236</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Gen Virol. 2014 Jun;95(Pt 6):1193-210</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24584475</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11181-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11562490</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Genet. 2016 Feb;48(2):195-200</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26727660</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2015 Aug;21(8):1372-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26196098</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Microbiol. 2008;62:403-24</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18785841</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):6974-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10860959</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2016 Jan 20;90(7):3794-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26792744</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2004 Mar 19;303(5665):1838-42</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14764886</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Elife. 2014 Oct 16;3:e03883</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25321142</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21071-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24324165</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2006 Apr 21;312(5772):399</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16556800</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 2011 Apr 10;412(2):401-10</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21333316</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2012;7(2):e27517</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22359533</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1356-61</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14745020</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Med. 2013 Nov 28;11:252</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24283203</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Arch Virol. 2016 May;161(5):1239-59</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26887968</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 2014 Apr;1838(4):1153-68</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24161712</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Infect Disord Drug Targets. 2007 Dec;7(4):318-28</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18220963</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Adv Virus Res. 2009;73:55-97</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19695381</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods Biochem Anal. 1988;33:129-64</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3128721</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):12873-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8917512</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Rep. 2013 Jan 31;3(1):23-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23333274</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Host Microbe. 2014 Nov 12;16(5):691-700</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25456074</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2005 Nov 17;438(7066):355-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16292310</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J R Soc Interface. 2014 Jan 15;11(92):20131083</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24430126</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2012 Aug;86(16):8645-52</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22674977</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochemistry. 1984 Nov 20;23 (24):5675-81</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6098295</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Ann N Y Acad Sci. 2010 May;1195:113-28</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20536820</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2013 Jun 20;153(7):1475-85</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23746829</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 1981 Jan 29;289(5796):366-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7464906</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Microbiol Mol Biol Rev. 2016 Jul 13;80(3):733-44</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27412880</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2015 Oct 1;526(7571):122-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26416728</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virology. 1986 Dec;155(2):484-97</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3788061</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>mSphere. 2016 Apr 06;1(2):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27303732</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Trends Microbiol. 2014 Nov;22(11):632-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25108746</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>MBio. 2014 Dec 12;5(6):null</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25505122</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21312-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19995968</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2014 Apr;88(7):3802-14</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24429367</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2010 Oct;84(19):9978-86</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20631125</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Chem Biol. 2009 Aug 28;16(8):803-14</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19716471</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Infect. 2016 Feb;72 (2):207-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26632329</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2011 Dec;7(12):e1002398</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22144894</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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<list>
<country>
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<li>Angleterre</li>
<li>Angleterre de l'Est</li>
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</settlement>
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<li>Université de Cambridge</li>
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<name sortKey="Belser, Jessica A" sort="Belser, Jessica A" uniqKey="Belser J" first="Jessica A" last="Belser">Jessica A. Belser</name>
<name sortKey="Cobey, Sarah" sort="Cobey, Sarah" uniqKey="Cobey S" first="Sarah" last="Cobey">Sarah Cobey</name>
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<name sortKey="Lloyd Smith, James O" sort="Lloyd Smith, James O" uniqKey="Lloyd Smith J" first="James O" last="Lloyd-Smith">James O. Lloyd-Smith</name>
<name sortKey="Raman, Rahul" sort="Raman, Rahul" uniqKey="Raman R" first="Rahul" last="Raman">Rahul Raman</name>
<name sortKey="Russell, Charles J" sort="Russell, Charles J" uniqKey="Russell C" first="Charles J" last="Russell">Charles J. Russell</name>
<name sortKey="Wilke, Claus O" sort="Wilke, Claus O" uniqKey="Wilke C" first="Claus O" last="Wilke">Claus O. Wilke</name>
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<name sortKey="Herfst, Sander" sort="Herfst, Sander" uniqKey="Herfst S" first="Sander" last="Herfst">Sander Herfst</name>
</region>
</country>
<country name="France">
<region name="Occitanie (région administrative)">
<name sortKey="Roche, Benjamin" sort="Roche, Benjamin" uniqKey="Roche B" first="Benjamin" last="Roche">Benjamin Roche</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/PandemieGrippaleV1/Data/PubMed/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000455 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd -nk 000455 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    PandemieGrippaleV1
   |flux=    PubMed
   |étape=   Checkpoint
   |type=    RBID
   |clé=     pubmed:27834632
   |texte=   Viral factors in influenza pandemic risk assessment.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/RBID.i   -Sk "pubmed:27834632" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd   \
       | NlmPubMed2Wicri -a PandemieGrippaleV1 

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Data generation: Wed Jun 10 11:04:28 2020. Site generation: Sun Mar 28 09:10:28 2021