PandemieGrippaleV1, Main, Exploration, bibRecord, 000614

Diversity of Mycobacterium tuberculosis lineages in French Polynesia

Identifieur interne : 000614 ( Main/Exploration ); précédent : 000613; suivant : 000615

Diversity of Mycobacterium tuberculosis lineages in French Polynesia

Auteurs : Djaltou Aboubaker Osman ; Michael Phelippeau [France] ; Michel Drancourt [Sénégal, France] ; Didier Musso [Sénégal, France]

Source :

Journal of Microbiology, Immunology and Infection [ 1684-1182 ] ; 2017-04.

RBID : Hal:hal-01573784

Descripteurs français

Wicri :
- geographic : Polynésie française.

English descriptors

mix :
- French Polynesia, Genotyping, Mycobacterial interspersed repetitive unit, Mycobacterium tuberculosis, Spoligotyping, tuberculosis.

Abstract

Background/Purpose: French Polynesia is an overseas territory located in the South Pacific. The incidence of tuberculosis in French Polynesia has been stable since 2000 with an average of 20 cases/y/100,000 inhabitants. Molecular epidemiology of Mycobacterium tuberculosis in French Polynesia is unknown because M. tuberculosis isolates have not been routinely genotyped. Methods: From 2009 to 2012, 34 isolates collected from 32 French Polynesian patients were identified as M. tuberculosis by probe hybridization. These isolates were genotyped using spoligotyping and 24-loci mycobacterial interspersed repetitive units (MIRUs)-variable number of tandem repeat (VNTR). Spoligotype patterns obtained using commercial kits were compared with the online international database SITVIT. MIRU-VNTR genotyping was performed using an in-house protocol based on capillary electrophoresis sizing for 24-loci MIRU-VNTR genotyping. Results: The results of the spoligotyping method revealed that 25 isolates grouped into six previously described spoligotypes [H1, H3, U likely (S), T1, Manu, and Beijing] and nine isolates grouped into six new spoligotypes. Comparison with the international database MIRU-VNTRplus distributed 30 isolates into five lineages (Haarlem, Latin American Mediterranean, S, X, and Beijing) and four as unassigned isolates. Conclusion: Genotyping identified four phylogenetic lineages belonging to the modern Euro eAmerican subgroup, one Beijing genotype responsible for worldwide pandemics, including remote islands in the South Pacific, and one Manu genotype of the ancestral lineage of M. tuberculosis. (C) 2015, Taiwan Society of Microbiology. Published by Elsevier Taiwan LLC.

Url:

https://hal.archives-ouvertes.fr/hal-01573784

DOI: 10.1016/j.jmii.2015.05.018

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Hal, to step Corpus: 000164
to stream Hal, to step Curation: 000164
to stream Hal, to step Checkpoint: 000272
to stream Main, to step Merge: 000616
to stream Main, to step Curation: 000614

Le document en format XML

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          <date type="start">2012-01-01</date>
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</hal:affiliation>
<country>Sénégal</country>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
<country>France</country>
<orgName type="university">Université d'Aix-Marseille</orgName>
</affiliation>
</author>
<author><name sortKey="Musso, Didier" sort="Musso, Didier" uniqKey="Musso D" first="Didier" last="Musso">Didier Musso</name>
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          <orgName type="acronym">URMITE</orgName>
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          <orgName>Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes</orgName>
          <orgName type="acronym">URMITE</orgName>
          <date type="start">2008-01-01</date>
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          <desc>            <address>              <addrLine>SiègeLe Sextant 44, bd de DunkerqueCS 9000913572 Marseille cedex 02</addrLine>
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          <orgName type="acronym">INSERM</orgName>
          <desc>            <address>              <addrLine>101, rue de Tolbiac, 75013 Paris </addrLine>
              <country key="FR"></country>
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<tutelle active="#struct-303759" type="indirect"><org type="regrouplaboratory" xml:id="struct-303759" status="OLD">          <orgName>IFR48</orgName>
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          <date type="end">2011-12-31</date>
          <desc>            <address>              <country key="FR"></country>
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          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>            <address>              <country key="FR"></country>
            </address>
            <ref type="url">http://www.cnrs.fr/</ref>
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<country>Sénégal</country>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
<country>France</country>
<orgName type="university">Université d'Aix-Marseille</orgName>
</affiliation>
</author>
</analytic>
<idno type="DOI">10.1016/j.jmii.2015.05.018</idno>
<series><title level="j">Journal of Microbiology, Immunology and Infection</title>
<idno type="ISSN">1684-1182</idno>
<imprint><date type="datePub">2017-04</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
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<profileDesc><textClass><keywords scheme="mix" xml:lang="en"><term>French Polynesia</term>
<term>Genotyping</term>
<term>Mycobacterial interspersed repetitive unit</term>
<term>Mycobacterium tuberculosis</term>
<term>Spoligotyping</term>
<term>tuberculosis</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Polynésie française</term>
</keywords>
</textClass>
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<front><div type="abstract" xml:lang="en">              <p>Background/Purpose: French Polynesia is an overseas territory located in the South Pacific. The incidence of tuberculosis in French Polynesia has been stable since 2000 with an average of 20 cases/y/100,000 inhabitants. Molecular epidemiology of Mycobacterium tuberculosis in French Polynesia is unknown because M. tuberculosis isolates have not been routinely genotyped. Methods: From 2009 to 2012, 34 isolates collected from 32 French Polynesian patients were identified as M. tuberculosis by probe hybridization. These isolates were genotyped using spoligotyping and 24-loci mycobacterial interspersed repetitive units (MIRUs)-variable number of tandem repeat (VNTR). Spoligotype patterns obtained using commercial kits were compared with the online international database SITVIT. MIRU-VNTR genotyping was performed using an in-house protocol based on capillary electrophoresis sizing for 24-loci MIRU-VNTR genotyping. Results: The results of the spoligotyping method revealed that 25 isolates grouped into six previously described spoligotypes [H1, H3, U likely (S), T1, Manu, and Beijing] and nine isolates grouped into six new spoligotypes. Comparison with the international database MIRU-VNTRplus distributed 30 isolates into five lineages (Haarlem, Latin American Mediterranean, S, X, and Beijing) and four as unassigned isolates. Conclusion: Genotyping identified four phylogenetic lineages belonging to the modern Euro eAmerican subgroup, one Beijing genotype responsible for worldwide pandemics, including remote islands in the South Pacific, and one Manu genotype of the ancestral lineage of M. tuberculosis. (C) 2015, Taiwan Society of Microbiology. Published by Elsevier Taiwan LLC.</p>
            </div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
<li>Sénégal</li>
</country>
<region><li>Provence-Alpes-Côte d'Azur</li>
</region>
<settlement><li>Marseille</li>
</settlement>
<orgName><li>Université d'Aix-Marseille</li>
</orgName>
</list>
<tree><noCountry><name sortKey="Osman, Djaltou Aboubaker" sort="Osman, Djaltou Aboubaker" uniqKey="Osman D" first="Djaltou Aboubaker" last="Osman">Djaltou Aboubaker Osman</name>
</noCountry>
<country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Phelippeau, Michael" sort="Phelippeau, Michael" uniqKey="Phelippeau M" first="Michael" last="Phelippeau">Michael Phelippeau</name>
</region>
</country>
<country name="Sénégal"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Drancourt, Michel" sort="Drancourt, Michel" uniqKey="Drancourt M" first="Michel" last="Drancourt">Michel Drancourt</name>
</region>
<name sortKey="Musso, Didier" sort="Musso, Didier" uniqKey="Musso D" first="Didier" last="Musso">Didier Musso</name>
</country>
</tree>
</affiliations>
</record>

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Diversity of Mycobacterium tuberculosis lineages in French Polynesia

Diversity of Mycobacterium tuberculosis lineages in French Polynesia

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