Phylogenetic analysis of HA and NA genes of influenza H1N1 viruses from 1918 to 2017.
Identifieur interne : 000300 ( Main/Curation ); précédent : 000299; suivant : 000301Phylogenetic analysis of HA and NA genes of influenza H1N1 viruses from 1918 to 2017.
Auteurs : H X Yan ; H F Xu ; W J He ; Y. Xie ; G Y DongSource :
- Acta virologica [ 0001-723X ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Sous-type H1N1 du virus de la grippe A.
- virologie : Grippe humaine, Infections à Orthomyxoviridae.
- Animaux, Chats, Chiens, Chine, Humains, Inde, Interactions hôte-pathogène, Phylogénie, Sous-type H1N1 du virus de la grippe A, Suidae.
- Wicri :
- geographic : République populaire de Chine, Inde.
English descriptors
- KwdEn :
- MESH :
- geographic : China, India.
- classification : Influenza A Virus, H1N1 Subtype.
- genetics : Influenza A Virus, H1N1 Subtype.
- virology : Influenza, Human, Orthomyxoviridae Infections.
- Animals, Cats, Dogs, Host-Pathogen Interactions, Humans, Phylogeny, Swine.
Abstract
The 1918 "Spanish" pandemic is the earliest known influenza H1N1 virus. Since then H1N1 viruses circulated between humans and animals continuously. With the increased amount of samples of H1N1 viruses and technology development, researchers have been studying how the viruses evolved. Here, we analyzed HA and NA genes of H1N1 viruses from three aspects: host distribution, geographical distribution and phylogenetic analysis. The data showed hosts were predominantly human, swine and poultry, and other hosts were mainly cat, ferret, wild bear, canine, cheetah and seal. In terms of geographical distribution, the North America and Eurasia were the main H1N1 influenza pandemic areas. Of them, the United States, China, Japan, Canada, the United Kingdom, India and Singapore were the most affected. The phylogenetic analysis of surface genes of influenza H1N1 viruses from 1918 to 2017 worldwide revealed the distribution of all avian influenza viruses (AIVs) showed a clear geographical difference, mainly concentrated in Eurasia and America. American and Eurasian swine viruses might be the ancestors of the 2009 pandemic virus' HA and NA genes. Swine influenza viruses played an important role in the spread of influenza viruses across species. To our knowledge, this is the first large-scale phylogenetic analysis of HA and NA genes of influenza H1N1 viruses worldwide until now. Our findings further emphasize the importance of surveillance of the genetic diversity of influenza H1N1 viruses in different hosts and raised more concerns about the long-time monitoring. Keywords: influenza H1N1 viruses; HA genes; NA genes; phylogenetic analysis; evolution.
DOI: 10.4149/av_2019_211
PubMed: 31230448
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000127
- to stream PubMed, to step Curation: Pour aller vers cette notice dans l'étape Curation :000127
- to stream PubMed, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000107
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :001F67
- to stream Ncbi, to step Curation: Pour aller vers cette notice dans l'étape Curation :001F67
- to stream Ncbi, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :001F67
- to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :000299
Links to Exploration step
pubmed:31230448Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic analysis of HA and NA genes of influenza H1N1 viruses from 1918 to 2017.</title>
<author><name sortKey="Yan, H X" sort="Yan, H X" uniqKey="Yan H" first="H X" last="Yan">H X Yan</name>
</author>
<author><name sortKey="Xu, H F" sort="Xu, H F" uniqKey="Xu H" first="H F" last="Xu">H F Xu</name>
</author>
<author><name sortKey="He, W J" sort="He, W J" uniqKey="He W" first="W J" last="He">W J He</name>
</author>
<author><name sortKey="Xie, Y" sort="Xie, Y" uniqKey="Xie Y" first="Y" last="Xie">Y. Xie</name>
</author>
<author><name sortKey="Dong, G Y" sort="Dong, G Y" uniqKey="Dong G" first="G Y" last="Dong">G Y Dong</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2019">2019</date>
<idno type="RBID">pubmed:31230448</idno>
<idno type="pmid">31230448</idno>
<idno type="doi">10.4149/av_2019_211</idno>
<idno type="wicri:Area/PubMed/Corpus">000127</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000127</idno>
<idno type="wicri:Area/PubMed/Curation">000127</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000127</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000107</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000107</idno>
<idno type="wicri:Area/Ncbi/Merge">001F67</idno>
<idno type="wicri:Area/Ncbi/Curation">001F67</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001F67</idno>
<idno type="wicri:doubleKey">0001-723X:2019:Yan H:phylogenetic:analysis:of</idno>
<idno type="wicri:Area/Main/Merge">000299</idno>
<idno type="wicri:Area/Main/Curation">000300</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Phylogenetic analysis of HA and NA genes of influenza H1N1 viruses from 1918 to 2017.</title>
<author><name sortKey="Yan, H X" sort="Yan, H X" uniqKey="Yan H" first="H X" last="Yan">H X Yan</name>
</author>
<author><name sortKey="Xu, H F" sort="Xu, H F" uniqKey="Xu H" first="H F" last="Xu">H F Xu</name>
</author>
<author><name sortKey="He, W J" sort="He, W J" uniqKey="He W" first="W J" last="He">W J He</name>
</author>
<author><name sortKey="Xie, Y" sort="Xie, Y" uniqKey="Xie Y" first="Y" last="Xie">Y. Xie</name>
</author>
<author><name sortKey="Dong, G Y" sort="Dong, G Y" uniqKey="Dong G" first="G Y" last="Dong">G Y Dong</name>
</author>
</analytic>
<series><title level="j">Acta virologica</title>
<idno type="ISSN">0001-723X</idno>
<imprint><date when="2019" type="published">2019</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Cats</term>
<term>China</term>
<term>Dogs</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>India</term>
<term>Influenza A Virus, H1N1 Subtype (classification)</term>
<term>Influenza A Virus, H1N1 Subtype (genetics)</term>
<term>Influenza, Human (virology)</term>
<term>Orthomyxoviridae Infections (virology)</term>
<term>Phylogeny</term>
<term>Swine</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term>
<term>Chats</term>
<term>Chiens</term>
<term>Chine</term>
<term>Grippe humaine (virologie)</term>
<term>Humains</term>
<term>Inde</term>
<term>Infections à Orthomyxoviridae (virologie)</term>
<term>Interactions hôte-pathogène</term>
<term>Phylogénie</term>
<term>Sous-type H1N1 du virus de la grippe A ()</term>
<term>Sous-type H1N1 du virus de la grippe A (génétique)</term>
<term>Suidae</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term>
<term>India</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A Virus, H1N1 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H1N1 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H1N1 du virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe humaine</term>
<term>Infections à Orthomyxoviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term>
<term>Orthomyxoviridae Infections</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Cats</term>
<term>Dogs</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Phylogeny</term>
<term>Swine</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Chats</term>
<term>Chiens</term>
<term>Chine</term>
<term>Humains</term>
<term>Inde</term>
<term>Interactions hôte-pathogène</term>
<term>Phylogénie</term>
<term>Sous-type H1N1 du virus de la grippe A</term>
<term>Suidae</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term>
<term>Inde</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The 1918 "Spanish" pandemic is the earliest known influenza H1N1 virus. Since then H1N1 viruses circulated between humans and animals continuously. With the increased amount of samples of H1N1 viruses and technology development, researchers have been studying how the viruses evolved. Here, we analyzed HA and NA genes of H1N1 viruses from three aspects: host distribution, geographical distribution and phylogenetic analysis. The data showed hosts were predominantly human, swine and poultry, and other hosts were mainly cat, ferret, wild bear, canine, cheetah and seal. In terms of geographical distribution, the North America and Eurasia were the main H1N1 influenza pandemic areas. Of them, the United States, China, Japan, Canada, the United Kingdom, India and Singapore were the most affected. The phylogenetic analysis of surface genes of influenza H1N1 viruses from 1918 to 2017 worldwide revealed the distribution of all avian influenza viruses (AIVs) showed a clear geographical difference, mainly concentrated in Eurasia and America. American and Eurasian swine viruses might be the ancestors of the 2009 pandemic virus' HA and NA genes. Swine influenza viruses played an important role in the spread of influenza viruses across species. To our knowledge, this is the first large-scale phylogenetic analysis of HA and NA genes of influenza H1N1 viruses worldwide until now. Our findings further emphasize the importance of surveillance of the genetic diversity of influenza H1N1 viruses in different hosts and raised more concerns about the long-time monitoring. Keywords: influenza H1N1 viruses; HA genes; NA genes; phylogenetic analysis; evolution.</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/PandemieGrippaleV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000300 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000300 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= PandemieGrippaleV1 |flux= Main |étape= Curation |type= RBID |clé= pubmed:31230448 |texte= Phylogenetic analysis of HA and NA genes of influenza H1N1 viruses from 1918 to 2017. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:31230448" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \ | NlmPubMed2Wicri -a PandemieGrippaleV1
This area was generated with Dilib version V0.6.34. |