Recovery of a Medieval Brucella melitensis Genome Using Shotgun Metagenomics
Identifieur interne : 000D61 ( Ncbi/Checkpoint ); précédent : 000D60; suivant : 000D62Recovery of a Medieval Brucella melitensis Genome Using Shotgun Metagenomics
Auteurs : Gemma L. Kay ; Martin J. Sergeant ; Valentina Giuffra ; Pasquale Bandiera ; Marco Milanese ; Barbara Bramanti ; Raffaella Bianucci ; Mark J. PallenSource :
- mBio [ 2150-7511 ] ; 2014.
Abstract
Shotgun metagenomics provides a powerful assumption-free approach to the recovery of pathogen genomes from contemporary and historical material. We sequenced the metagenome of a calcified nodule from the skeleton of a 14th-century middle-aged male excavated from the medieval Sardinian settlement of Geridu. We obtained 6.5-fold coverage of a
Url:
DOI: 10.1128/mBio.01337-14
PubMed: 25028426
PubMed Central: 4161259
Affiliations:
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PMC:4161259Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Recovery of a Medieval <italic>Brucella melitensis</italic>
Genome Using Shotgun Metagenomics</title>
<author><name sortKey="Kay, Gemma L" sort="Kay, Gemma L" uniqKey="Kay G" first="Gemma L." last="Kay">Gemma L. Kay</name>
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<author><name sortKey="Sergeant, Martin J" sort="Sergeant, Martin J" uniqKey="Sergeant M" first="Martin J." last="Sergeant">Martin J. Sergeant</name>
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<author><name sortKey="Giuffra, Valentina" sort="Giuffra, Valentina" uniqKey="Giuffra V" first="Valentina" last="Giuffra">Valentina Giuffra</name>
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<author><name sortKey="Bandiera, Pasquale" sort="Bandiera, Pasquale" uniqKey="Bandiera P" first="Pasquale" last="Bandiera">Pasquale Bandiera</name>
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<author><name sortKey="Milanese, Marco" sort="Milanese, Marco" uniqKey="Milanese M" first="Marco" last="Milanese">Marco Milanese</name>
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<author><name sortKey="Bramanti, Barbara" sort="Bramanti, Barbara" uniqKey="Bramanti B" first="Barbara" last="Bramanti">Barbara Bramanti</name>
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<author><name sortKey="Bianucci, Raffaella" sort="Bianucci, Raffaella" uniqKey="Bianucci R" first="Raffaella" last="Bianucci">Raffaella Bianucci</name>
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<author><name sortKey="Pallen, Mark J" sort="Pallen, Mark J" uniqKey="Pallen M" first="Mark J." last="Pallen">Mark J. Pallen</name>
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<series><title level="j">mBio</title>
<idno type="eISSN">2150-7511</idno>
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<front><div type="abstract" xml:lang="en"><title>ABSTRACT</title>
<p>Shotgun metagenomics provides a powerful assumption-free approach to the recovery of pathogen genomes from contemporary and historical material. We sequenced the metagenome of a calcified nodule from the skeleton of a 14th-century middle-aged male excavated from the medieval Sardinian settlement of Geridu. We obtained 6.5-fold coverage of a <italic>Brucella melitensis</italic>
genome. Sequence reads from this genome showed signatures typical of ancient or aged DNA. Despite the relatively low coverage, we were able to use information from single-nucleotide polymorphisms to place the medieval pathogen genome within a clade of <italic>B. melitensis</italic>
strains that included the well-studied Ether strain and two other recent Italian isolates. We confirmed this placement using information from deletions and IS<italic>711</italic>
insertions. We conclude that metagenomics stands ready to document past and present infections, shedding light on the emergence, evolution, and spread of microbial pathogens.</p>
</div>
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<name sortKey="Bianucci, Raffaella" sort="Bianucci, Raffaella" uniqKey="Bianucci R" first="Raffaella" last="Bianucci">Raffaella Bianucci</name>
<name sortKey="Bramanti, Barbara" sort="Bramanti, Barbara" uniqKey="Bramanti B" first="Barbara" last="Bramanti">Barbara Bramanti</name>
<name sortKey="Giuffra, Valentina" sort="Giuffra, Valentina" uniqKey="Giuffra V" first="Valentina" last="Giuffra">Valentina Giuffra</name>
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