The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas
Identifieur interne : 000292 ( Main/Merge ); précédent : 000291; suivant : 000293The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas
Auteurs : Jesse E. Taylor ; M. Andreína Pacheco ; David J. Bacon [États-Unis] ; Mohammad A. Beg [Pakistan] ; Ricardo Luiz Machado [Brésil] ; Rick M. Fairhurst [États-Unis] ; Socrates Herrera [Colombie] ; Jung-Yeon Kim [Corée du Sud] ; Didier Menard [Cambodge] ; Marinete Marins P Voa [Brésil] ; Leopoldo Villegas [États-Unis] ; Georges Snounou [France] ; Liwang Cui [États-Unis] ; Fadile Yildiz Zeyrek [Turquie] ; Ananias A. EscalanteSource :
- Molecular Biology and Evolution [ 0737-4038 ] ; 2013.
Abstract
Url:
DOI: 10.1093/molbev/mst104
PubMed: 23733143
PubMed Central: 3748350
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PMC:3748350Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Evolutionary History of <italic>Plasmodium vivax</italic>
as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas</title>
<author><name sortKey="Taylor, Jesse E" sort="Taylor, Jesse E" uniqKey="Taylor J" first="Jesse E." last="Taylor">Jesse E. Taylor</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Pacheco, M Andreina" sort="Pacheco, M Andreina" uniqKey="Pacheco M" first="M. Andreína" last="Pacheco">M. Andreína Pacheco</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Bacon, David J" sort="Bacon, David J" uniqKey="Bacon D" first="David J." last="Bacon">David J. Bacon</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF2">Naval Research Laboratory, Washington, DC</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">District de Columbia</region>
</placeName>
<wicri:cityArea>Naval Research Laboratory, Washington</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Beg, Mohammad A" sort="Beg, Mohammad A" uniqKey="Beg M" first="Mohammad A." last="Beg">Mohammad A. Beg</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF3">Department of Pathology and Microbiology, Aga Khan University, Karachi, Pakistan</nlm:aff>
<country xml:lang="fr">Pakistan</country>
<wicri:regionArea>Department of Pathology and Microbiology, Aga Khan University, Karachi</wicri:regionArea>
<wicri:noRegion>Karachi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Machado, Ricardo Luiz" sort="Machado, Ricardo Luiz" uniqKey="Machado R" first="Ricardo Luiz" last="Machado">Ricardo Luiz Machado</name>
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<country xml:lang="fr">Brésil</country>
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<author><name sortKey="Fairhurst, Rick M" sort="Fairhurst, Rick M" uniqKey="Fairhurst R" first="Rick M." last="Fairhurst">Rick M. Fairhurst</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
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</affiliation>
</author>
<author><name sortKey="Herrera, Socrates" sort="Herrera, Socrates" uniqKey="Herrera S" first="Socrates" last="Herrera">Socrates Herrera</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF6">Caucaseco Scientific Research Center/Immunology Institute, Universidad del Valle, Cali, Colombia</nlm:aff>
<country xml:lang="fr">Colombie</country>
<wicri:regionArea>Caucaseco Scientific Research Center/Immunology Institute, Universidad del Valle, Cali</wicri:regionArea>
<wicri:noRegion>Cali</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kim, Jung Yeon" sort="Kim, Jung Yeon" uniqKey="Kim J" first="Jung-Yeon" last="Kim">Jung-Yeon Kim</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF7">Division of Malaria and Parasitic Diseases, Korea Centers for Disease Control and Prevention, Osong, Republic of Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Division of Malaria and Parasitic Diseases, Korea Centers for Disease Control and Prevention, Osong</wicri:regionArea>
<wicri:noRegion>Osong</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Menard, Didier" sort="Menard, Didier" uniqKey="Menard D" first="Didier" last="Menard">Didier Menard</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF8">Institut Pasteur du Cambodge, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="P Voa, Marinete Marins" sort="P Voa, Marinete Marins" uniqKey="P Voa M" first="Marinete Marins" last="P Voa">Marinete Marins P Voa</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF9">Evandro Chagas Institute, Belém, Pará, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Evandro Chagas Institute, Belém, Pará</wicri:regionArea>
<placeName><region type="state">Pará</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Villegas, Leopoldo" sort="Villegas, Leopoldo" uniqKey="Villegas L" first="Leopoldo" last="Villegas">Leopoldo Villegas</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF10">ICF International, International Health and Development Division, Calverton, Maryland</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>ICF International, International Health and Development Division, Calverton</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Snounou, Georges" sort="Snounou, Georges" uniqKey="Snounou G" first="Georges" last="Snounou">Georges Snounou</name>
<affiliation wicri:level="3"><nlm:aff id="mst104-AFF12">Université Pierre et Marie Curie - Paris VI, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université Pierre et Marie Curie - Paris VI, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="mst104-AFF13">Institut National de la Santé et de la Recherche Médicale, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut National de la Santé et de la Recherche Médicale, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Cui, Liwang" sort="Cui, Liwang" uniqKey="Cui L" first="Liwang" last="Cui">Liwang Cui</name>
<affiliation wicri:level="4"><nlm:aff id="mst104-AFF14">Department of Entomology, Pennsylvania State University</nlm:aff>
<country>États-Unis</country>
<placeName><settlement type="city">University Park (Pennsylvanie)</settlement>
<region type="state">Pennsylvanie</region>
</placeName>
<orgName type="university">Université d'État de Pennsylvanie</orgName>
</affiliation>
</author>
<author><name sortKey="Zeyrek, Fadile Yildiz" sort="Zeyrek, Fadile Yildiz" uniqKey="Zeyrek F" first="Fadile Yildiz" last="Zeyrek">Fadile Yildiz Zeyrek</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF15">Department of Microbiology, Harran University School of Medicine, Sanliurfa, Turkey</nlm:aff>
<country xml:lang="fr">Turquie</country>
<wicri:regionArea>Department of Microbiology, Harran University School of Medicine, Sanliurfa</wicri:regionArea>
<wicri:noRegion>Sanliurfa</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Escalante, Ananias A" sort="Escalante, Ananias A" uniqKey="Escalante A" first="Ananias A." last="Escalante">Ananias A. Escalante</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="mst104-AFF16">School of Life Sciences, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
</titleStmt>
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<idno type="doi">10.1093/molbev/mst104</idno>
<date when="2013">2013</date>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The Evolutionary History of <italic>Plasmodium vivax</italic>
as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas</title>
<author><name sortKey="Taylor, Jesse E" sort="Taylor, Jesse E" uniqKey="Taylor J" first="Jesse E." last="Taylor">Jesse E. Taylor</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Pacheco, M Andreina" sort="Pacheco, M Andreina" uniqKey="Pacheco M" first="M. Andreína" last="Pacheco">M. Andreína Pacheco</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Bacon, David J" sort="Bacon, David J" uniqKey="Bacon D" first="David J." last="Bacon">David J. Bacon</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF2">Naval Research Laboratory, Washington, DC</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">District de Columbia</region>
</placeName>
<wicri:cityArea>Naval Research Laboratory, Washington</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Beg, Mohammad A" sort="Beg, Mohammad A" uniqKey="Beg M" first="Mohammad A." last="Beg">Mohammad A. Beg</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF3">Department of Pathology and Microbiology, Aga Khan University, Karachi, Pakistan</nlm:aff>
<country xml:lang="fr">Pakistan</country>
<wicri:regionArea>Department of Pathology and Microbiology, Aga Khan University, Karachi</wicri:regionArea>
<wicri:noRegion>Karachi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Machado, Ricardo Luiz" sort="Machado, Ricardo Luiz" uniqKey="Machado R" first="Ricardo Luiz" last="Machado">Ricardo Luiz Machado</name>
<affiliation wicri:level="3"><nlm:aff id="mst104-AFF4">Centro de Investigação de Microrganismos, Departamento de Doenças Dermatológicas, Infecciosas e Parasitárias, Faculdade de Medicina de São José do Rio Preto, São José do Rio Preto, São Paulo, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Centro de Investigação de Microrganismos, Departamento de Doenças Dermatológicas, Infecciosas e Parasitárias, Faculdade de Medicina de São José do Rio Preto, São José do Rio Preto, São Paulo</wicri:regionArea>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Fairhurst, Rick M" sort="Fairhurst, Rick M" uniqKey="Fairhurst R" first="Rick M." last="Fairhurst">Rick M. Fairhurst</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF5">Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, Maryland</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Herrera, Socrates" sort="Herrera, Socrates" uniqKey="Herrera S" first="Socrates" last="Herrera">Socrates Herrera</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF6">Caucaseco Scientific Research Center/Immunology Institute, Universidad del Valle, Cali, Colombia</nlm:aff>
<country xml:lang="fr">Colombie</country>
<wicri:regionArea>Caucaseco Scientific Research Center/Immunology Institute, Universidad del Valle, Cali</wicri:regionArea>
<wicri:noRegion>Cali</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kim, Jung Yeon" sort="Kim, Jung Yeon" uniqKey="Kim J" first="Jung-Yeon" last="Kim">Jung-Yeon Kim</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF7">Division of Malaria and Parasitic Diseases, Korea Centers for Disease Control and Prevention, Osong, Republic of Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Division of Malaria and Parasitic Diseases, Korea Centers for Disease Control and Prevention, Osong</wicri:regionArea>
<wicri:noRegion>Osong</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Menard, Didier" sort="Menard, Didier" uniqKey="Menard D" first="Didier" last="Menard">Didier Menard</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF8">Institut Pasteur du Cambodge, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="P Voa, Marinete Marins" sort="P Voa, Marinete Marins" uniqKey="P Voa M" first="Marinete Marins" last="P Voa">Marinete Marins P Voa</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF9">Evandro Chagas Institute, Belém, Pará, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Evandro Chagas Institute, Belém, Pará</wicri:regionArea>
<placeName><region type="state">Pará</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Villegas, Leopoldo" sort="Villegas, Leopoldo" uniqKey="Villegas L" first="Leopoldo" last="Villegas">Leopoldo Villegas</name>
<affiliation wicri:level="2"><nlm:aff id="mst104-AFF10">ICF International, International Health and Development Division, Calverton, Maryland</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>ICF International, International Health and Development Division, Calverton</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Snounou, Georges" sort="Snounou, Georges" uniqKey="Snounou G" first="Georges" last="Snounou">Georges Snounou</name>
<affiliation wicri:level="3"><nlm:aff id="mst104-AFF12">Université Pierre et Marie Curie - Paris VI, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université Pierre et Marie Curie - Paris VI, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="mst104-AFF13">Institut National de la Santé et de la Recherche Médicale, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut National de la Santé et de la Recherche Médicale, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Cui, Liwang" sort="Cui, Liwang" uniqKey="Cui L" first="Liwang" last="Cui">Liwang Cui</name>
<affiliation wicri:level="4"><nlm:aff id="mst104-AFF14">Department of Entomology, Pennsylvania State University</nlm:aff>
<country>États-Unis</country>
<placeName><settlement type="city">University Park (Pennsylvanie)</settlement>
<region type="state">Pennsylvanie</region>
</placeName>
<orgName type="university">Université d'État de Pennsylvanie</orgName>
</affiliation>
</author>
<author><name sortKey="Zeyrek, Fadile Yildiz" sort="Zeyrek, Fadile Yildiz" uniqKey="Zeyrek F" first="Fadile Yildiz" last="Zeyrek">Fadile Yildiz Zeyrek</name>
<affiliation wicri:level="1"><nlm:aff id="mst104-AFF15">Department of Microbiology, Harran University School of Medicine, Sanliurfa, Turkey</nlm:aff>
<country xml:lang="fr">Turquie</country>
<wicri:regionArea>Department of Microbiology, Harran University School of Medicine, Sanliurfa</wicri:regionArea>
<wicri:noRegion>Sanliurfa</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Escalante, Ananias A" sort="Escalante, Ananias A" uniqKey="Escalante A" first="Ananias A." last="Escalante">Ananias A. Escalante</name>
<affiliation><nlm:aff id="mst104-AFF1">Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="mst104-AFF16">School of Life Sciences, Arizona State University</nlm:aff>
<wicri:noCountry code="subfield">Arizona State University</wicri:noCountry>
</affiliation>
</author>
</analytic>
<series><title level="j">Molecular Biology and Evolution</title>
<idno type="ISSN">0737-4038</idno>
<idno type="eISSN">1537-1719</idno>
<imprint><date when="2013">2013</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
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<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p><italic>Plasmodium vivax</italic>
is the most prevalent human malaria parasite in the Americas. Previous studies have contrasted the genetic diversity of parasite populations in the Americas with those in Asia and Oceania, concluding that New World populations exhibit low genetic diversity consistent with a recent introduction. Here we used an expanded sample of complete mitochondrial genome sequences to investigate the diversity of <italic>P. vivax</italic>
in the Americas as well as in other continental populations. We show that the diversity of <italic>P. vivax</italic>
in the Americas is comparable to that in Asia and Oceania, and we identify several divergent clades circulating in South America that may have resulted from independent introductions. In particular, we show that several haplotypes sampled in Venezuela and northeastern Brazil belong to a clade that diverged from the other <italic>P. vivax</italic>
lineages at least 30,000 years ago, albeit not necessarily in the Americas. We propose that, unlike in Asia where human migration increases local genetic diversity, the combined effects of the geographical structure and the low incidence of <italic>vivax</italic>
malaria in the Americas has resulted in patterns of low local but high regional genetic diversity. This could explain previous views that <italic>P. vivax</italic>
in the Americas has low genetic diversity because these were based on studies carried out in limited areas. Further elucidation of the complex geographical pattern of <italic>P. vivax</italic>
variation will be important both for diversity assessments of genes encoding candidate vaccine antigens and in the formulation of control and surveillance measures aimed at malaria elimination.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alexandre, Ma" uniqKey="Alexandre M">MA Alexandre</name>
</author>
<author><name sortKey="Ferreira, Co" uniqKey="Ferreira C">CO Ferreira</name>
</author>
<author><name sortKey="Siqueira, Am" uniqKey="Siqueira A">AM Siqueira</name>
</author>
<author><name sortKey="Magalhaes, Bl" uniqKey="Magalhaes B">BL Magalhaes</name>
</author>
<author><name sortKey="Mourao, Mp" uniqKey="Mourao M">MP Mourao</name>
</author>
<author><name sortKey="Lacerda, Mv" uniqKey="Lacerda M">MV Lacerda</name>
</author>
<author><name sortKey="Alecrim, Mg" uniqKey="Alecrim M">MG Alecrim</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Anstey, Nm" uniqKey="Anstey N">NM Anstey</name>
</author>
<author><name sortKey="Handojo, T" uniqKey="Handojo T">T Handojo</name>
</author>
<author><name sortKey="Pain, Mc" uniqKey="Pain M">MC Pain</name>
</author>
<author><name sortKey="Kenangalem, E" uniqKey="Kenangalem E">E Kenangalem</name>
</author>
<author><name sortKey="Tjitra, E" uniqKey="Tjitra E">E Tjitra</name>
</author>
<author><name sortKey="Price, Rn" uniqKey="Price R">RN Price</name>
</author>
<author><name sortKey="Maguire, Gp" uniqKey="Maguire G">GP Maguire</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Arnott, A" uniqKey="Arnott A">A Arnott</name>
</author>
<author><name sortKey="Barry, Ae" uniqKey="Barry A">AE Barry</name>
</author>
<author><name sortKey="Reeder, Jc" uniqKey="Reeder J">JC Reeder</name>
</author>
</analytic>
</biblStruct>
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