MersV1, PubMed, Curation, bibRecord, 002009

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

Identifieur interne : 002009 ( PubMed/Curation ); précédent : 002008; suivant : 002010

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

Auteurs : Ming Fang [France] ; Wencke-Maria Zeisberg ; Ciaran Condon ; Vasily Ogryzko ; Antoine Danchin ; Undine Mechold

Source :

Nucleic acids research [ 1362-4962 ] ; 2009.

RBID : pubmed:19553197

Descripteurs français

KwdFr :
- ADN (métabolisme), ARN (), ARN (métabolisme), Bacillus subtilis (enzymologie), Bacillus subtilis (génétique), Mutation, Oligoribonucléotides (), Oligoribonucléotides (métabolisme), Phylogénie, Ribonucléases (), Ribonucléases (génétique), Ribonucléases (métabolisme), Test de complémentation.
MESH :
- enzymologie : Bacillus subtilis.
- génétique : Bacillus subtilis, Ribonucléases.
- métabolisme : ADN, ARN, Oligoribonucléotides, Ribonucléases.
- ARN, Mutation, Oligoribonucléotides, Phylogénie, Ribonucléases, Test de complémentation.

English descriptors

KwdEn :
- Bacillus subtilis (enzymology), Bacillus subtilis (genetics), DNA (metabolism), Genetic Complementation Test, Mutation, Oligoribonucleotides (chemistry), Oligoribonucleotides (metabolism), Phylogeny, RNA (chemistry), RNA (metabolism), Ribonucleases (classification), Ribonucleases (genetics), Ribonucleases (metabolism).
MESH :
- chemical , chemistry : Oligoribonucleotides, RNA.
- chemical , classification : Ribonucleases.
- chemical , genetics : Ribonucleases.
- chemical , metabolism : DNA, Oligoribonucleotides, RNA, Ribonucleases.
- enzymology : Bacillus subtilis.
- genetics : Bacillus subtilis.
- Genetic Complementation Test, Mutation, Phylogeny.

Abstract

Escherichia coli possesses only one essential oligoribonuclease (Orn), an enzyme that can degrade oligoribonucleotides of five residues and shorter in length (nanoRNA). Firmicutes including Bacillus subtilis do not have an Orn homolog. We had previously identified YtqI (NrnA) as functional analog of Orn in B. subtilis. Screening a genomic library from B. subtilis for genes that can complement a conditional orn mutant, we identify here YngD (NrnB) as a second nanoRNase in B. subtilis. Like NrnA, NrnB is a member of the DHH/DHHA1 protein family of phosphoesterases. NrnB degrades nanoRNA 5-mers in vitro similarily to Orn. Low expression levels of NrnB are sufficient for orn complementation. YhaM, a known RNase present in B. subtilis, degrades nanoRNA efficiently in vitro but requires high levels of expression for only partial complementation of the orn(-) strain. A triple mutant (nrnA(-), nrnB(-), yhaM(-)) in B. subtilis is viable and shows almost no impairment in growth. Lastly, RNase J1 seems also to have some 5'-to-3' exoribonuclease activity on nanoRNA and thus can potentially finish degradation of RNA. We conclude that, unlike in E. coli, degradation of nanoRNA is performed in a redundant fashion in B. subtilis.

DOI: 10.1093/nar/gkp527
PubMed: 19553197

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Le document en format XML

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<front><div type="abstract" xml:lang="en">Escherichia coli possesses only one essential oligoribonuclease (Orn), an enzyme that can degrade oligoribonucleotides of five residues and shorter in length (nanoRNA). Firmicutes including Bacillus subtilis do not have an Orn homolog. We had previously identified YtqI (NrnA) as functional analog of Orn in B. subtilis. Screening a genomic library from B. subtilis for genes that can complement a conditional orn mutant, we identify here YngD (NrnB) as a second nanoRNase in B. subtilis. Like NrnA, NrnB is a member of the DHH/DHHA1 protein family of phosphoesterases. NrnB degrades nanoRNA 5-mers in vitro similarily to Orn. Low expression levels of NrnB are sufficient for orn complementation. YhaM, a known RNase present in B. subtilis, degrades nanoRNA efficiently in vitro but requires high levels of expression for only partial complementation of the orn(-) strain. A triple mutant (nrnA(-), nrnB(-), yhaM(-)) in B. subtilis is viable and shows almost no impairment in growth. Lastly, RNase J1 seems also to have some 5'-to-3' exoribonuclease activity on nanoRNA and thus can potentially finish degradation of RNA. We conclude that, unlike in E. coli, degradation of nanoRNA is performed in a redundant fashion in B. subtilis.</div>
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<Abstract><AbstractText>Escherichia coli possesses only one essential oligoribonuclease (Orn), an enzyme that can degrade oligoribonucleotides of five residues and shorter in length (nanoRNA). Firmicutes including Bacillus subtilis do not have an Orn homolog. We had previously identified YtqI (NrnA) as functional analog of Orn in B. subtilis. Screening a genomic library from B. subtilis for genes that can complement a conditional orn mutant, we identify here YngD (NrnB) as a second nanoRNase in B. subtilis. Like NrnA, NrnB is a member of the DHH/DHHA1 protein family of phosphoesterases. NrnB degrades nanoRNA 5-mers in vitro similarily to Orn. Low expression levels of NrnB are sufficient for orn complementation. YhaM, a known RNase present in B. subtilis, degrades nanoRNA efficiently in vitro but requires high levels of expression for only partial complementation of the orn(-) strain. A triple mutant (nrnA(-), nrnB(-), yhaM(-)) in B. subtilis is viable and shows almost no impairment in growth. Lastly, RNase J1 seems also to have some 5'-to-3' exoribonuclease activity on nanoRNA and thus can potentially finish degradation of RNA. We conclude that, unlike in E. coli, degradation of nanoRNA is performed in a redundant fashion in B. subtilis.</AbstractText>
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{{Explor lien
   |wiki=    Sante
   |area=    MersV1
   |flux=    PubMed
   |étape=   Curation
   |type=    RBID
   |clé=     pubmed:19553197
   |texte=   Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.
}}

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Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

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