Chemical synthesis of the 5-taurinomethyl(-2-thio)uridine modified anticodon arm of the human mitochondrial tRNA(Leu(UUR)) and tRNA(Lys).
Identifieur interne : 001A04 ( PubMed/Curation ); précédent : 001A03; suivant : 001A05Chemical synthesis of the 5-taurinomethyl(-2-thio)uridine modified anticodon arm of the human mitochondrial tRNA(Leu(UUR)) and tRNA(Lys).
Auteurs : Grazyna Leszczynska [Pologne] ; Piotr Leonczak [Pologne] ; Karolina Wozniak [Pologne] ; Andrzej Malkiewicz [Pologne]Source :
- RNA (New York, N.Y.) [ 1469-9001 ] ; 2014.
Descripteurs français
- KwdFr :
- 4-Thiouridine (analogues et dérivés), 4-Thiouridine (synthèse chimique), ARN de transfert de la leucine (génétique), ARN de transfert de la lysine (génétique), Anticodon (génétique), Conformation d'acide nucléique, Humains, Mitochondries (génétique), Mutation (génétique), Oligoribonucléotides (génétique).
- MESH :
- analogues et dérivés : 4-Thiouridine.
- génétique : ARN de transfert de la leucine, ARN de transfert de la lysine, Anticodon, Mitochondries, Mutation, Oligoribonucléotides.
- synthèse chimique : 4-Thiouridine.
- Conformation d'acide nucléique, Humains.
English descriptors
- KwdEn :
- MESH :
- chemical , analogs & derivatives : Thiouridine.
- chemical , chemical synthesis : Thiouridine.
- chemical , genetics : Anticodon, Oligoribonucleotides, RNA, Transfer, Leu, RNA, Transfer, Lys.
- genetics : Mitochondria, Mutation.
- Humans, Nucleic Acid Conformation.
Abstract
5-Taurinomethyluridine (τm(5)U) and 5-taurinomethyl-2-thiouridine (τm(5)s(2)U) are located at the wobble position of human mitochondrial (hmt) tRNA(Leu(UUR)) and tRNA(Lys), respectively. Both hypermodified units restrict decoding of the third codon letter to A and G. Pathogenic mutations in the genes encoding hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys) are responsible for the loss of the discussed modifications and, as a consequence, for the occurrence of severe mitochondrial dysfunctions (MELAS, MERRF). Synthetic oligoribonucleotides bearing modified nucleosides are a versatile tool for studying mechanisms of genetic message translation and accompanying pathologies at nucleoside resolution. In this paper, we present site-specific chemical incorporation of τm(5)U and τm(5)s(2)U into 17-mers related to the sequence of the anticodon arms hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys), respectively employing phosphoramidite chemistry on CPG support. Selected protecting groups for the sulfonic acid (4-(tert-butyldiphenylsilanyloxy)-2,2-dimethylbutyl) and the exoamine function (-C(O)CF3) are compatible with the blockage of the canonical monomeric units. The synthesis of τm(5)s(2)U-modified RNA fragment was performed under conditions eliminating the formation of side products of 2-thiocarbonyl group oxidation and/or oxidative desulphurization. The structure of the final oligomers was confirmed by mass spectroscopy and enzymatic cleavage data.
DOI: 10.1261/rna.044412.114
PubMed: 24757169
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<term>Nucleic Acid Conformation</term>
<term>Oligoribonucleotides (genetics)</term>
<term>RNA, Transfer, Leu (genetics)</term>
<term>RNA, Transfer, Lys (genetics)</term>
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<term>Thiouridine (chemical synthesis)</term>
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<term>Conformation d'acide nucléique</term>
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<term>Mitochondries (génétique)</term>
<term>Mutation (génétique)</term>
<term>Oligoribonucléotides (génétique)</term>
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<term>RNA, Transfer, Lys</term>
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<front><div type="abstract" xml:lang="en">5-Taurinomethyluridine (τm(5)U) and 5-taurinomethyl-2-thiouridine (τm(5)s(2)U) are located at the wobble position of human mitochondrial (hmt) tRNA(Leu(UUR)) and tRNA(Lys), respectively. Both hypermodified units restrict decoding of the third codon letter to A and G. Pathogenic mutations in the genes encoding hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys) are responsible for the loss of the discussed modifications and, as a consequence, for the occurrence of severe mitochondrial dysfunctions (MELAS, MERRF). Synthetic oligoribonucleotides bearing modified nucleosides are a versatile tool for studying mechanisms of genetic message translation and accompanying pathologies at nucleoside resolution. In this paper, we present site-specific chemical incorporation of τm(5)U and τm(5)s(2)U into 17-mers related to the sequence of the anticodon arms hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys), respectively employing phosphoramidite chemistry on CPG support. Selected protecting groups for the sulfonic acid (4-(tert-butyldiphenylsilanyloxy)-2,2-dimethylbutyl) and the exoamine function (-C(O)CF3) are compatible with the blockage of the canonical monomeric units. The synthesis of τm(5)s(2)U-modified RNA fragment was performed under conditions eliminating the formation of side products of 2-thiocarbonyl group oxidation and/or oxidative desulphurization. The structure of the final oligomers was confirmed by mass spectroscopy and enzymatic cleavage data. </div>
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<Abstract><AbstractText>5-Taurinomethyluridine (τm(5)U) and 5-taurinomethyl-2-thiouridine (τm(5)s(2)U) are located at the wobble position of human mitochondrial (hmt) tRNA(Leu(UUR)) and tRNA(Lys), respectively. Both hypermodified units restrict decoding of the third codon letter to A and G. Pathogenic mutations in the genes encoding hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys) are responsible for the loss of the discussed modifications and, as a consequence, for the occurrence of severe mitochondrial dysfunctions (MELAS, MERRF). Synthetic oligoribonucleotides bearing modified nucleosides are a versatile tool for studying mechanisms of genetic message translation and accompanying pathologies at nucleoside resolution. In this paper, we present site-specific chemical incorporation of τm(5)U and τm(5)s(2)U into 17-mers related to the sequence of the anticodon arms hmt-tRNA(Leu(UUR)) and hmt-tRNA(Lys), respectively employing phosphoramidite chemistry on CPG support. Selected protecting groups for the sulfonic acid (4-(tert-butyldiphenylsilanyloxy)-2,2-dimethylbutyl) and the exoamine function (-C(O)CF3) are compatible with the blockage of the canonical monomeric units. The synthesis of τm(5)s(2)U-modified RNA fragment was performed under conditions eliminating the formation of side products of 2-thiocarbonyl group oxidation and/or oxidative desulphurization. The structure of the final oligomers was confirmed by mass spectroscopy and enzymatic cleavage data. </AbstractText>
<CopyrightInformation>© 2014 Leszczynska et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.</CopyrightInformation>
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