DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods.
Identifieur interne : 000F58 ( PubMed/Curation ); précédent : 000F57; suivant : 000F59DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods.
Auteurs : Mohd Jaseem Khan [Brésil] ; Amanda Cristina Trabuco [Brésil] ; Helda Liz Alfonso [Brésil] ; Mario Luis Figueiredo [Brésil] ; Weber Cheli Batista [Brésil] ; Soraya Jabur Badra [Brésil] ; Luiz Tadeu Figueiredo [Brésil] ; Marco Aurélio Lavrador [Brésil] ; Victor Hugo Aquino [Brésil]Source :
- PLoS neglected tropical diseases [ 1935-2735 ] ; 2016.
Abstract
Viruses transmitted by small mammals and arthropods serve as global threats to humans. Most emergent and re-emergent viral agents are transmitted by these groups; therefore, the development of high-throughput screening methods for the detection and surveillance of such viruses is of great interest. In this study, we describe a DNA microarray platform that can be used for screening all viruses transmitted by small mammals and arthropods (SMAvirusChip) with nucleotide sequences that have been deposited in the GenBank. SMAvirusChip was designed with more than 15,000 oligonucleotide probes (60-mers), including viral and control probes. Two SMAvirusChip versions were designed: SMAvirusChip v1 contains 4209 viral probes for the detection of 409 viruses, while SMAvirusChip v2 contains 4943 probes for the detection of 416 viruses. SMAvirusChip was evaluated with 20 laboratory reference-strain viruses. These viruses could be specifically detected when alone in a sample or when artificially mixed within a single sample. The sensitivity of SMAvirusChip was evaluated using 10-fold serial dilutions of dengue virus (DENV). The results showed a detection limit as low as 2.6E3 RNA copies/mL. Additionally, the sensitivity was one log10 lower (2.6E2 RNA copies/mL) than quantitative real-time RT-PCR and sufficient to detect viral genomes in clinical samples. The detection of DENV in serum samples of DENV-infected patients (n = 6) and in a whole blood sample spiked with DENV confirmed the applicability of SMAvirusChip for the detection of viruses in clinical samples. In addition, in a pool of mosquito samples spiked with DENV, the virus was also detectable. SMAvirusChip was able to specifically detect viruses in cell cultures, serum samples, total blood samples and a pool of mosquitoes, confirming that cellular RNA/DNA did not interfere with the assay. Therefore, SMAvirusChip may represent an innovative surveillance method for the rapid identification of viruses transmitted by small mammals and arthropods.
DOI: 10.1371/journal.pntd.0005017
PubMed: 27654806
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sortKey="Figueiredo, Mario Luis" sort="Figueiredo, Mario Luis" uniqKey="Figueiredo M" first="Mario Luis" last="Figueiredo">Mario Luis Figueiredo</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo</wicri:regionArea></affiliation></author><author><name sortKey="Batista, Weber Cheli" sort="Batista, Weber Cheli" uniqKey="Batista W" first="Weber Cheli" last="Batista">Weber Cheli Batista</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Virology, Research Center of Tropical Medicine, Porto Velho, Rondonia, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratory of Virology, Research Center of Tropical Medicine, Porto Velho, Rondonia</wicri:regionArea></affiliation></author><author><name sortKey="Badra, Soraya Jabur" sort="Badra, Soraya Jabur" uniqKey="Badra S" first="Soraya Jabur" last="Badra">Soraya Jabur Badra</name><affiliation wicri:level="1"><nlm:affiliation>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo</wicri:regionArea></affiliation></author><author><name sortKey="Figueiredo, Luiz Tadeu" sort="Figueiredo, Luiz Tadeu" uniqKey="Figueiredo L" first="Luiz Tadeu" last="Figueiredo">Luiz Tadeu Figueiredo</name><affiliation wicri:level="1"><nlm:affiliation>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo</wicri:regionArea></affiliation></author><author><name sortKey="Lavrador, Marco Aurelio" sort="Lavrador, Marco Aurelio" uniqKey="Lavrador M" first="Marco Aurélio" last="Lavrador">Marco Aurélio Lavrador</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Bioinformatics and Biostatistics, Department of Physics and Chemistry, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratory of Bioinformatics and Biostatistics, Department of Physics and Chemistry, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo</wicri:regionArea></affiliation></author><author><name sortKey="Aquino, Victor Hugo" sort="Aquino, Victor Hugo" uniqKey="Aquino V" first="Victor Hugo" last="Aquino">Victor Hugo Aquino</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS neglected tropical diseases</title><idno type="eISSN">1935-2735</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Viruses transmitted by small mammals and arthropods serve as global threats to humans. Most emergent and re-emergent viral agents are transmitted by these groups; therefore, the development of high-throughput screening methods for the detection and surveillance of such viruses is of great interest. In this study, we describe a DNA microarray platform that can be used for screening all viruses transmitted by small mammals and arthropods (SMAvirusChip) with nucleotide sequences that have been deposited in the GenBank. SMAvirusChip was designed with more than 15,000 oligonucleotide probes (60-mers), including viral and control probes. Two SMAvirusChip versions were designed: SMAvirusChip v1 contains 4209 viral probes for the detection of 409 viruses, while SMAvirusChip v2 contains 4943 probes for the detection of 416 viruses. SMAvirusChip was evaluated with 20 laboratory reference-strain viruses. These viruses could be specifically detected when alone in a sample or when artificially mixed within a single sample. The sensitivity of SMAvirusChip was evaluated using 10-fold serial dilutions of dengue virus (DENV). The results showed a detection limit as low as 2.6E3 RNA copies/mL. Additionally, the sensitivity was one log10 lower (2.6E2 RNA copies/mL) than quantitative real-time RT-PCR and sufficient to detect viral genomes in clinical samples. The detection of DENV in serum samples of DENV-infected patients (n = 6) and in a whole blood sample spiked with DENV confirmed the applicability of SMAvirusChip for the detection of viruses in clinical samples. In addition, in a pool of mosquito samples spiked with DENV, the virus was also detectable. SMAvirusChip was able to specifically detect viruses in cell cultures, serum samples, total blood samples and a pool of mosquitoes, confirming that cellular RNA/DNA did not interfere with the assay. Therefore, SMAvirusChip may represent an innovative surveillance method for the rapid identification of viruses transmitted by small mammals and arthropods.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">27654806</PMID><DateRevised><Year>2019</Year><Month>11</Month><Day>20</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1935-2735</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>9</Issue><PubDate><Year>2016</Year><Month>Sep</Month></PubDate></JournalIssue><Title>PLoS neglected tropical diseases</Title><ISOAbbreviation>PLoS Negl Trop Dis</ISOAbbreviation></Journal><ArticleTitle>DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods.</ArticleTitle><Pagination><MedlinePgn>e0005017</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pntd.0005017</ELocationID><Abstract><AbstractText>Viruses transmitted by small mammals and arthropods serve as global threats to humans. Most emergent and re-emergent viral agents are transmitted by these groups; therefore, the development of high-throughput screening methods for the detection and surveillance of such viruses is of great interest. In this study, we describe a DNA microarray platform that can be used for screening all viruses transmitted by small mammals and arthropods (SMAvirusChip) with nucleotide sequences that have been deposited in the GenBank. SMAvirusChip was designed with more than 15,000 oligonucleotide probes (60-mers), including viral and control probes. Two SMAvirusChip versions were designed: SMAvirusChip v1 contains 4209 viral probes for the detection of 409 viruses, while SMAvirusChip v2 contains 4943 probes for the detection of 416 viruses. SMAvirusChip was evaluated with 20 laboratory reference-strain viruses. These viruses could be specifically detected when alone in a sample or when artificially mixed within a single sample. The sensitivity of SMAvirusChip was evaluated using 10-fold serial dilutions of dengue virus (DENV). The results showed a detection limit as low as 2.6E3 RNA copies/mL. Additionally, the sensitivity was one log10 lower (2.6E2 RNA copies/mL) than quantitative real-time RT-PCR and sufficient to detect viral genomes in clinical samples. The detection of DENV in serum samples of DENV-infected patients (n = 6) and in a whole blood sample spiked with DENV confirmed the applicability of SMAvirusChip for the detection of viruses in clinical samples. In addition, in a pool of mosquito samples spiked with DENV, the virus was also detectable. SMAvirusChip was able to specifically detect viruses in cell cultures, serum samples, total blood samples and a pool of mosquitoes, confirming that cellular RNA/DNA did not interfere with the assay. Therefore, SMAvirusChip may represent an innovative surveillance method for the rapid identification of viruses transmitted by small mammals and arthropods.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Khan</LastName><ForeName>Mohd Jaseem</ForeName><Initials>MJ</Initials><AffiliationInfo><Affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trabuco</LastName><ForeName>Amanda Cristina</ForeName><Initials>AC</Initials><AffiliationInfo><Affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alfonso</LastName><ForeName>Helda Liz</ForeName><Initials>HL</Initials><AffiliationInfo><Affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Figueiredo</LastName><ForeName>Mario Luis</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Batista</LastName><ForeName>Weber Cheli</ForeName><Initials>WC</Initials><AffiliationInfo><Affiliation>Laboratory of Virology, Research Center of Tropical Medicine, Porto Velho, Rondonia, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Badra</LastName><ForeName>Soraya Jabur</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Figueiredo</LastName><ForeName>Luiz Tadeu</ForeName><Initials>LT</Initials><AffiliationInfo><Affiliation>Center for Virology Research, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lavrador</LastName><ForeName>Marco Aurélio</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Laboratory of Bioinformatics and Biostatistics, Department of Physics and Chemistry, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aquino</LastName><ForeName>Victor Hugo</ForeName><Initials>VH</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1910-0776</Identifier><AffiliationInfo><Affiliation>Laboratory of Virology, Department of Clinical Analyses, Toxicology and Food Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>09</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS Negl Trop Dis</MedlineTA><NlmUniqueID>101291488</NlmUniqueID><ISSNLinking>1935-2727</ISSNLinking></MedlineJournalInfo><CoiStatement>The authors have declared that no competing interests exist.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>06</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>08</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>9</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>9</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>9</Month><Day>23</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27654806</ArticleId><ArticleId IdType="pmc">PMC5031435</ArticleId><ArticleId IdType="doi">10.1371/journal.pntd.0005017</ArticleId><ArticleId IdType="pii">PNTD-D-16-01045</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Genome Biol. 2007;8(9):R190</Citation><ArticleIdList><ArticleId IdType="pubmed">17868443</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Trop Med Hyg. 1985 Jan;34(1):170-3</Citation><ArticleIdList><ArticleId IdType="pubmed">3970307</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2016 Mar 10;374(10):984-5</Citation><ArticleIdList><ArticleId IdType="pubmed">26862812</ArticleId></ArticleIdList></Reference><Reference><Citation>ISBT Sci Ser. 2014 Jul;9(1):262-267</Citation><ArticleIdList><ArticleId IdType="pubmed">25210534</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Virol. 2015 Mar;64:128-36</Citation><ArticleIdList><ArticleId IdType="pubmed">25453325</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2010 Oct 18;5(10):e13381</Citation><ArticleIdList><ArticleId IdType="pubmed">20976137</ArticleId></ArticleIdList></Reference><Reference><Citation>Euro Surveill. 2014 Mar 06;19(9):null</Citation><ArticleIdList><ArticleId IdType="pubmed">24626205</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2014 Sep;20(9):1568-70</Citation><ArticleIdList><ArticleId IdType="pubmed">25152089</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Infect Dis. 2016 Mar;44:11-5</Citation><ArticleIdList><ArticleId IdType="pubmed">26854199</ArticleId></ArticleIdList></Reference><Reference><Citation>Virol J. 2010 Jan 27;7:22</Citation><ArticleIdList><ArticleId IdType="pubmed">20105295</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Negl Trop Dis. 2013 Aug 15;7(8):e2349</Citation><ArticleIdList><ArticleId IdType="pubmed">23967358</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Nov 10;9(11):e112351</Citation><ArticleIdList><ArticleId IdType="pubmed">25383618</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Microbiol. 2010 Jan 27;140(3-4):213-20</Citation><ArticleIdList><ArticleId IdType="pubmed">19748747</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2001 Apr;19(4):342-7</Citation><ArticleIdList><ArticleId IdType="pubmed">11283592</ArticleId></ArticleIdList></Reference><Reference><Citation>Antiviral Res. 2010 Feb;85(2):328-45</Citation><ArticleIdList><ArticleId IdType="pubmed">19857523</ArticleId></ArticleIdList></Reference><Reference><Citation>J Med Virol. 2005 Dec;77(4):528-40</Citation><ArticleIdList><ArticleId IdType="pubmed">16254977</ArticleId></ArticleIdList></Reference><Reference><Citation>Adv Virus Res. 2014;89:201-75</Citation><ArticleIdList><ArticleId IdType="pubmed">24751197</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Trop Med Hyg. 2013 Feb;88(2):245-53</Citation><ArticleIdList><ArticleId IdType="pubmed">23249687</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2006 Apr;16(4):527-35</Citation><ArticleIdList><ArticleId IdType="pubmed">16481660</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2008 May 14;3(5):e2163</Citation><ArticleIdList><ArticleId IdType="pubmed">18478124</ArticleId></ArticleIdList></Reference><Reference><Citation>J Med Virol. 2008 Aug;80(8):1426-33</Citation><ArticleIdList><ArticleId IdType="pubmed">18551599</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2014 Jan;88(2):1401</Citation><ArticleIdList><ArticleId IdType="pubmed">24379419</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15687-92</Citation><ArticleIdList><ArticleId IdType="pubmed">12429852</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2016 Mar 10;374(10 ):951-8</Citation><ArticleIdList><ArticleId IdType="pubmed">26862926</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2005 Aug;43(8):3779-87</Citation><ArticleIdList><ArticleId IdType="pubmed">16081910</ArticleId></ArticleIdList></Reference><Reference><Citation>Vector Borne Zoonotic Dis. 2016 May;16(5):295-301</Citation><ArticleIdList><ArticleId IdType="pubmed">26991057</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2013 Apr 25;496(7446):504-7</Citation><ArticleIdList><ArticleId IdType="pubmed">23563266</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010 Nov 25;11:668</Citation><ArticleIdList><ArticleId IdType="pubmed">21108826</ArticleId></ArticleIdList></Reference><Reference><Citation>Parasite. 2008 Mar;15(1):3-13</Citation><ArticleIdList><ArticleId IdType="pubmed">18416242</ArticleId></ArticleIdList></Reference><Reference><Citation>J Vector Borne Dis. 2013 Apr-Jun;50(2):77-84</Citation><ArticleIdList><ArticleId IdType="pubmed">23995308</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Biol. 2003 Nov;1(2):E2</Citation><ArticleIdList><ArticleId IdType="pubmed">14624234</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann N Y Acad Sci. 2010 May;1195:99-112</Citation><ArticleIdList><ArticleId IdType="pubmed">20536819</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biotechnol. 2011 Oct;49(2):176-86</Citation><ArticleIdList><ArticleId IdType="pubmed">21390485</ArticleId></ArticleIdList></Reference><Reference><Citation>Clin Microbiol Rev. 1998 Jul;11(3):480-96</Citation><ArticleIdList><ArticleId IdType="pubmed">9665979</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2009 Aug 11;4(8):e6569</Citation><ArticleIdList><ArticleId IdType="pubmed">19668365</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2002 Jan 1;30(1):207-10</Citation><ArticleIdList><ArticleId IdType="pubmed">11752295</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2007;8(5):R93</Citation><ArticleIdList><ArticleId IdType="pubmed">17531104</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Virol. 2011 May;51(1):5-7</Citation><ArticleIdList><ArticleId IdType="pubmed">21382746</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2012 Jul;50(7):2496-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22535985</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2016 May 19;374(20):1981-7</Citation><ArticleIdList><ArticleId IdType="pubmed">27074377</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Virol. 2015 Feb;10:27-33</Citation><ArticleIdList><ArticleId IdType="pubmed">25562117</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Negl Trop Dis. 2012;6(2):e1485</Citation><ArticleIdList><ArticleId IdType="pubmed">22347512</ArticleId></ArticleIdList></Reference><Reference><Citation>J Med Virol. 2016 Oct;88(10):1711-9</Citation><ArticleIdList><ArticleId IdType="pubmed">27004990</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2012 May;86(9):5399</Citation><ArticleIdList><ArticleId IdType="pubmed">22492924</ArticleId></ArticleIdList></Reference><Reference><Citation>Rev Inst Med Trop Sao Paulo. 2003 Jan-Feb;45(1):11-6</Citation><ArticleIdList><ArticleId IdType="pubmed">12751316</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Negl Trop Dis. 2010 Apr 27;4(4):e624</Citation><ArticleIdList><ArticleId IdType="pubmed">20436960</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2007 Jan;13(1):73-81</Citation><ArticleIdList><ArticleId IdType="pubmed">17370518</ArticleId></ArticleIdList></Reference><Reference><Citation>Rev Peru Med Exp Salud Publica. 2012 Jul-Sep;29(3):390-5</Citation><ArticleIdList><ArticleId IdType="pubmed">23085803</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Virol. 2014 Dec;61(4):597-9</Citation><ArticleIdList><ArticleId IdType="pubmed">25453334</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006;34(22):6605-11</Citation><ArticleIdList><ArticleId IdType="pubmed">17135211</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2008 Feb 21;451(7181):990-3</Citation><ArticleIdList><ArticleId IdType="pubmed">18288193</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet Infect Dis. 2016 Jun;16(6):653-60</Citation><ArticleIdList><ArticleId IdType="pubmed">26897108</ArticleId></ArticleIdList></Reference><Reference><Citation>J Infect Dis. 1998 Feb;177(2):277-83</Citation><ArticleIdList><ArticleId IdType="pubmed">9466512</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Virol. 2012 Nov;55(3):191-203</Citation><ArticleIdList><ArticleId IdType="pubmed">22840968</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2008 Aug 15;24(16):i83-9</Citation><ArticleIdList><ArticleId IdType="pubmed">18689845</ArticleId></ArticleIdList></Reference><Reference><Citation>Vector Borne Zoonotic Dis. 2011 Mar;11(3):291-300</Citation><ArticleIdList><ArticleId IdType="pubmed">20645866</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Infect Dis. 2013 Sep 20;13:437</Citation><ArticleIdList><ArticleId IdType="pubmed">24053492</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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