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Hydrogen-bonded mol-ecular salts of reduced benzo-thia-zole derivatives with carboxyl-ates: a robust (8) supra-molecular motif (even when disordered).

Identifieur interne : 000633 ( PubMed/Curation ); précédent : 000632; suivant : 000634

Hydrogen-bonded mol-ecular salts of reduced benzo-thia-zole derivatives with carboxyl-ates: a robust (8) supra-molecular motif (even when disordered).

Auteurs : Mohammed A E. Shaibah [Inde] ; Belakavadi K. Sagar [Inde] ; Hemmige S. Yathirajan [Inde] ; David B. Cordes [Royaume-Uni] ; Alexandra M Z. Slawin [Royaume-Uni] ; William T A. Harrison [Royaume-Uni]

Source :

RBID : pubmed:30800445

Abstract

The syntheses and structures of five mol-ecular salts of protonated 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine (C11H19N2S+) with different deprotonated carb-oxy-lic acids (4-methyl-benzoic acid, 4-bromo-benzoic acid, 3,5-di-nitro-benzoic acid, fumaric acid and succinic acid) are reported, namely 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-methyl-benzoate, C11H19N2S+·C8H7O2-, (I), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-bromo-benzoate, C11H19N2S+·C7H4BrO2-, (II), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 3,5-di-nitro-benzoate, C11H19N2S+·C7H3N2O6-, (III), bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) fumarate, 2C11H19N2S+·C4H2O42-,(IV), and the 1:1 co-crystal of bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) succinate and 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium hydrogen succin-ate 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine, 1.5C11H19N2S+·0.5C4H4O42-·0.5C4H5O4-. 0.5C11H18N2S, (V). In every case, the cation protonation occurs at the N atom of the thia-zole ring and the six-membered ring adopts a half-chair conformation (in some cases, the deviating methyl-ene groups are disordered over two sets of sites). The C-N bond lengths of the nominal -NH+=C-NH2 fragment of the cation are indistinguishable, indicating a significant contribution of the -NH-C=N+H2 resonance form to the structure. The packing for (I)-(V) features a robust local R22(8) loop motif in which the cation forms two near-linear N-H⋯O hydrogen bonds from the N+-H group and syn H atom of the amine group to the carboxyl-ate group of an adjacent anion [(V) shows disorder of one of these bonds over N-H⋯O and N⋯H-O contributors but the same R22(8) loop results for both disorder components]. The anti H atom of the -NH2 group also forms an N-H⋯O hydrogen bond, which results in [001] chains in (I) and (II), isolated centrosymmetric tetra-mers in (III) and [100] chains in (IV) and (V). Hirshfeld fingerprint plots and contact percentages for the different types of contacts of the cations are discussed.

DOI: 10.1107/S2056989018018224
PubMed: 30800445

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<div type="abstract" xml:lang="en">The syntheses and structures of five mol-ecular salts of protonated 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine (C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
) with different deprotonated carb-oxy-lic acids (4-methyl-benzoic acid, 4-bromo-benzoic acid, 3,5-di-nitro-benzoic acid, fumaric acid and succinic acid) are reported, namely 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-methyl-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>8</sub>
H
<sub>7</sub>
O
<sub>2</sub>
<sup>-</sup>
, (I), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-bromo-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>7</sub>
H
<sub>4</sub>
BrO
<sub>2</sub>
<sup>-</sup>
, (II), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 3,5-di-nitro-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>7</sub>
H
<sub>3</sub>
N
<sub>2</sub>
O
<sub>6</sub>
<sup>-</sup>
, (III), bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) fumarate, 2C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>4</sub>
H
<sub>2</sub>
O
<sub>4</sub>
<sup>2-</sup>
,(IV), and the 1:1 co-crystal of bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) succinate and 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium hydrogen succin-ate 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine, 1.5C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·0.5C
<sub>4</sub>
H
<sub>4</sub>
O
<sub>4</sub>
<sup>2-</sup>
·0.5C
<sub>4</sub>
H
<sub>5</sub>
O
<sub>4</sub>
<sup>-</sup>
. 0.5C
<sub>11</sub>
H
<sub>18</sub>
N
<sub>2</sub>
S, (V). In every case, the cation protonation occurs at the N atom of the thia-zole ring and the six-membered ring adopts a half-chair conformation (in some cases, the deviating methyl-ene groups are disordered over two sets of sites). The C-N bond lengths of the nominal -NH
<sup>+</sup>
=C-NH
<sub>2</sub>
fragment of the cation are indistinguishable, indicating a significant contribution of the -NH-C=N
<sup>+</sup>
H
<sub>2</sub>
resonance form to the structure. The packing for (I)-(V) features a robust local
<i>R</i>
<sub>2</sub>
<sup>2</sup>
(8) loop motif in which the cation forms two near-linear N-H⋯O hydrogen bonds from the N
<sup>+</sup>
-H group and
<i>syn</i>
H atom of the amine group to the carboxyl-ate group of an adjacent anion [(V) shows disorder of one of these bonds over N-H⋯O and N⋯H-O contributors but the same
<i>R</i>
<sub>2</sub>
<sup>2</sup>
(8) loop results for both disorder components]. The
<i>anti</i>
H atom of the -NH
<sub>2</sub>
group also forms an N-H⋯O hydrogen bond, which results in [001] chains in (I) and (II), isolated centrosymmetric tetra-mers in (III) and [100] chains in (IV) and (V). Hirshfeld fingerprint plots and contact percentages for the different types of contacts of the cations are discussed.</div>
</front>
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<DateRevised>
<Year>2020</Year>
<Month>02</Month>
<Day>25</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Print">2056-9890</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>75</Volume>
<Issue>Pt 2</Issue>
<PubDate>
<Year>2019</Year>
<Month>Feb</Month>
<Day>01</Day>
</PubDate>
</JournalIssue>
<Title>Acta crystallographica. Section E, Crystallographic communications</Title>
<ISOAbbreviation>Acta Crystallogr E Crystallogr Commun</ISOAbbreviation>
</Journal>
<ArticleTitle>Hydrogen-bonded mol-ecular salts of reduced benzo-thia-zole derivatives with carboxyl-ates: a robust (8) supra-molecular motif (even when disordered).</ArticleTitle>
<Pagination>
<MedlinePgn>167-174</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1107/S2056989018018224</ELocationID>
<Abstract>
<AbstractText>The syntheses and structures of five mol-ecular salts of protonated 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine (C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
) with different deprotonated carb-oxy-lic acids (4-methyl-benzoic acid, 4-bromo-benzoic acid, 3,5-di-nitro-benzoic acid, fumaric acid and succinic acid) are reported, namely 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-methyl-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>8</sub>
H
<sub>7</sub>
O
<sub>2</sub>
<sup>-</sup>
, (I), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 4-bromo-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>7</sub>
H
<sub>4</sub>
BrO
<sub>2</sub>
<sup>-</sup>
, (II), 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium 3,5-di-nitro-benzoate, C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>7</sub>
H
<sub>3</sub>
N
<sub>2</sub>
O
<sub>6</sub>
<sup>-</sup>
, (III), bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) fumarate, 2C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·C
<sub>4</sub>
H
<sub>2</sub>
O
<sub>4</sub>
<sup>2-</sup>
,(IV), and the 1:1 co-crystal of bis-(2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium) succinate and 2-amino-4,4,7,7-tetra-methyl-4,5,6,7-tetra-hydro-1,3-benzo-thia-zol-3-ium hydrogen succin-ate 4,4,7,7-tetra-methyl-3a,5,6,7a-tetra-hydro-benzo-thia-zol-2-yl-amine, 1.5C
<sub>11</sub>
H
<sub>19</sub>
N
<sub>2</sub>
S
<sup>+</sup>
·0.5C
<sub>4</sub>
H
<sub>4</sub>
O
<sub>4</sub>
<sup>2-</sup>
·0.5C
<sub>4</sub>
H
<sub>5</sub>
O
<sub>4</sub>
<sup>-</sup>
. 0.5C
<sub>11</sub>
H
<sub>18</sub>
N
<sub>2</sub>
S, (V). In every case, the cation protonation occurs at the N atom of the thia-zole ring and the six-membered ring adopts a half-chair conformation (in some cases, the deviating methyl-ene groups are disordered over two sets of sites). The C-N bond lengths of the nominal -NH
<sup>+</sup>
=C-NH
<sub>2</sub>
fragment of the cation are indistinguishable, indicating a significant contribution of the -NH-C=N
<sup>+</sup>
H
<sub>2</sub>
resonance form to the structure. The packing for (I)-(V) features a robust local
<i>R</i>
<sub>2</sub>
<sup>2</sup>
(8) loop motif in which the cation forms two near-linear N-H⋯O hydrogen bonds from the N
<sup>+</sup>
-H group and
<i>syn</i>
H atom of the amine group to the carboxyl-ate group of an adjacent anion [(V) shows disorder of one of these bonds over N-H⋯O and N⋯H-O contributors but the same
<i>R</i>
<sub>2</sub>
<sup>2</sup>
(8) loop results for both disorder components]. The
<i>anti</i>
H atom of the -NH
<sub>2</sub>
group also forms an N-H⋯O hydrogen bond, which results in [001] chains in (I) and (II), isolated centrosymmetric tetra-mers in (III) and [100] chains in (IV) and (V). Hirshfeld fingerprint plots and contact percentages for the different types of contacts of the cations are discussed.</AbstractText>
</Abstract>
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<LastName>Shaibah</LastName>
<ForeName>Mohammed A E</ForeName>
<Initials>MAE</Initials>
<AffiliationInfo>
<Affiliation>Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India.</Affiliation>
</AffiliationInfo>
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<LastName>Sagar</LastName>
<ForeName>Belakavadi K</ForeName>
<Initials>BK</Initials>
<AffiliationInfo>
<Affiliation>Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y">
<LastName>Yathirajan</LastName>
<ForeName>Hemmige S</ForeName>
<Initials>HS</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0001-9039-0273</Identifier>
<AffiliationInfo>
<Affiliation>Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Cordes</LastName>
<ForeName>David B</ForeName>
<Initials>DB</Initials>
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<AffiliationInfo>
<Affiliation>School of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Slawin</LastName>
<ForeName>Alexandra M Z</ForeName>
<Initials>AMZ</Initials>
<AffiliationInfo>
<Affiliation>School of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Harrison</LastName>
<ForeName>William T A</ForeName>
<Initials>WTA</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0003-2253-4866</Identifier>
<AffiliationInfo>
<Affiliation>Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland.</Affiliation>
</AffiliationInfo>
</Author>
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