A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.
Identifieur interne : 000574 ( PubMed/Curation ); précédent : 000573; suivant : 000575A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.
Auteurs : Nischay Mishra [États-Unis] ; Shamsudeen F. Fagbo [Arabie saoudite] ; Abdulaziz N. Alagaili [Arabie saoudite] ; Adam Nitido [États-Unis] ; Simon H. Williams [États-Unis] ; James Ng [États-Unis] ; Bohyun Lee [États-Unis] ; Abdulkareem Durosinlorun [Nigeria] ; Joel A. Garcia [États-Unis] ; Komal Jain [États-Unis] ; Vishal Kapoor [États-Unis] ; Jonathan H. Epstein [États-Unis] ; Thomas Briese [États-Unis] ; Ziad A. Memish ; Kevin J. Olival [États-Unis] ; W Ian Lipkin [États-Unis]Source :
- PloS one [ 1932-6203 ] ; 2019.
Descripteurs français
- KwdFr :
- Animaux, Arabie saoudite, Caliciviridae (génétique), Caliciviridae (isolement et purification), Chiroptera (génétique), Chiroptera (virologie), Coronavirus du syndrome respiratoire du Moyen-Orient, Fèces (virologie), Humains, Mammifères (virologie), Moyen Orient, Métagénome (génétique), Métagénomique, Paramyxoviridae (génétique), Paramyxoviridae (isolement et purification), Phylogénie, Picornaviridae (génétique), Picornaviridae (isolement et purification), Rotavirus (génétique), Rotavirus (isolement et purification), Séquençage nucléotidique à haut débit, Virus à ARN (génétique), Égypte.
- MESH :
- génétique : Caliciviridae, Chiroptera, Métagénome, Paramyxoviridae, Picornaviridae, Rotavirus, Virus à ARN.
- isolement et purification : Caliciviridae, Paramyxoviridae, Picornaviridae, Rotavirus.
- virologie : Chiroptera, Fèces, Mammifères.
- Animaux, Arabie saoudite, Coronavirus du syndrome respiratoire du Moyen-Orient, Humains, Moyen Orient, Métagénomique, Phylogénie, Séquençage nucléotidique à haut débit, Égypte.
- Wicri :
- geographic : Égypte, Arabie saoudite.
English descriptors
- KwdEn :
- Animals, Caliciviridae (genetics), Caliciviridae (isolation & purification), Chiroptera (genetics), Chiroptera (virology), Egypt, Feces (virology), High-Throughput Nucleotide Sequencing, Humans, Mammals (virology), Metagenome (genetics), Metagenomics, Middle East, Middle East Respiratory Syndrome Coronavirus, Paramyxoviridae (genetics), Paramyxoviridae (isolation & purification), Phylogeny, Picornaviridae (genetics), Picornaviridae (isolation & purification), RNA Viruses (genetics), Rotavirus (genetics), Rotavirus (isolation & purification), Saudi Arabia.
- MESH :
- geographic : Egypt, Middle East, Saudi Arabia.
- genetics : Caliciviridae, Chiroptera, Metagenome, Paramyxoviridae, Picornaviridae, RNA Viruses, Rotavirus.
- isolation & purification : Caliciviridae, Paramyxoviridae, Picornaviridae, Rotavirus.
- virology : Chiroptera, Feces, Mammals.
- Animals, High-Throughput Nucleotide Sequencing, Humans, Metagenomics, Middle East Respiratory Syndrome Coronavirus, Phylogeny.
Abstract
Bats are implicated as natural reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, Ebola, Marburg, Nipah, Hendra, Rabies and other lyssaviruses. Accordingly, many One Health surveillance and viral discovery programs have focused on bats. In this report we present viral metagenomic data from bats collected in the Kingdom of Saudi Arabia [KSA]. Unbiased high throughput sequencing of fecal samples from 72 bat individuals comprising four species; lesser mouse-tailed bat (Rhinopoma hardwickii), Egyptian tomb bat (Taphozous perforatus), straw-colored fruit bat (Eidolon helvum), and Egyptian fruit bat (Rousettus aegyptiacus) revealed molecular evidence of a diverse set of viral families: Picornaviridae (hepatovirus, teschovirus, parechovirus), Reoviridae (rotavirus), Polyomaviridae (polyomavirus), Papillomaviridae (papillomavirus), Astroviridae (astrovirus), Caliciviridae (sapovirus), Coronaviridae (coronavirus), Adenoviridae (adenovirus), Paramyxoviridae (paramyxovirus), and unassigned mononegavirales (chuvirus). Additionally, we discovered a bastro-like virus (Middle East Hepe-Astrovirus), with a genomic organization similar to Hepeviridae. However, since it shared homology with Hepeviridae and Astroviridae at ORF1 and in ORF2, respectively, the newly discovered Hepe-Astrovirus may represent a phylogenetic bridge between Hepeviridae and Astroviridae.
DOI: 10.1371/journal.pone.0214227
PubMed: 30969980
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Ziad A. Memish<affiliation><nlm:affiliation>The College of Medicine, Al faisal University & Prince Mohammed Bin Abdulaziz Hospital, Ministry of Health, Riyadh, Kingdom of Saudi Arabia.</nlm:affiliation><wicri:noCountry code="subField">Kingdom of Saudi Arabia</wicri:noCountry></affiliation>Le document en format XML
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Fagbo</name><affiliation wicri:level="1"><nlm:affiliation>One Health Unit, Executive Directorate for Surveillance and Response, National Center for Disease Prevention and Control, Riyadh, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>One Health Unit, Executive Directorate for Surveillance and Response, National Center for Disease Prevention and Control, Riyadh</wicri:regionArea></affiliation></author><author><name sortKey="Alagaili, Abdulaziz N" sort="Alagaili, Abdulaziz N" uniqKey="Alagaili A" first="Abdulaziz N" last="Alagaili">Abdulaziz N. Alagaili</name><affiliation wicri:level="1"><nlm:affiliation>KSU Mammals Research Chair, Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>KSU Mammals Research Chair, Department of Zoology, College of Science, King Saud University, Riyadh</wicri:regionArea></affiliation></author><author><name sortKey="Nitido, Adam" sort="Nitido, Adam" uniqKey="Nitido A" first="Adam" last="Nitido">Adam Nitido</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Williams, Simon H" sort="Williams, Simon H" uniqKey="Williams S" first="Simon H" last="Williams">Simon H. Williams</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Ng, James" sort="Ng, James" uniqKey="Ng J" first="James" last="Ng">James Ng</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Bohyun" sort="Lee, Bohyun" uniqKey="Lee B" first="Bohyun" last="Lee">Bohyun Lee</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Durosinlorun, Abdulkareem" sort="Durosinlorun, Abdulkareem" uniqKey="Durosinlorun A" first="Abdulkareem" last="Durosinlorun">Abdulkareem Durosinlorun</name><affiliation wicri:level="1"><nlm:affiliation>Federal Ministry of Agriculture and Rural Development, Kaduna, Nigeria.</nlm:affiliation><country xml:lang="fr">Nigeria</country><wicri:regionArea>Federal Ministry of Agriculture and Rural Development, Kaduna</wicri:regionArea></affiliation></author><author><name sortKey="Garcia, Joel A" sort="Garcia, Joel A" uniqKey="Garcia J" first="Joel A" last="Garcia">Joel A. Garcia</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Jain, Komal" sort="Jain, Komal" uniqKey="Jain K" first="Komal" last="Jain">Komal Jain</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Kapoor, Vishal" sort="Kapoor, Vishal" uniqKey="Kapoor V" first="Vishal" last="Kapoor">Vishal Kapoor</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Epstein, Jonathan H" sort="Epstein, Jonathan H" uniqKey="Epstein J" first="Jonathan H" last="Epstein">Jonathan H. Epstein</name><affiliation wicri:level="1"><nlm:affiliation>EcoHealth Alliance, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>EcoHealth Alliance, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Briese, Thomas" sort="Briese, Thomas" uniqKey="Briese T" first="Thomas" last="Briese">Thomas Briese</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Memish, Ziad A" sort="Memish, Ziad A" uniqKey="Memish Z" first="Ziad A" last="Memish">Ziad A. Memish</name><affiliation><nlm:affiliation>The College of Medicine, Al faisal University & Prince Mohammed Bin Abdulaziz Hospital, Ministry of Health, Riyadh, Kingdom of Saudi Arabia.</nlm:affiliation><wicri:noCountry code="subField">Kingdom of Saudi Arabia</wicri:noCountry></affiliation></author><author><name sortKey="Olival, Kevin J" sort="Olival, Kevin J" uniqKey="Olival K" first="Kevin J" last="Olival">Kevin J. Olival</name><affiliation wicri:level="1"><nlm:affiliation>EcoHealth Alliance, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>EcoHealth Alliance, New York, New York</wicri:regionArea></affiliation></author><author><name sortKey="Lipkin, W Ian" sort="Lipkin, W Ian" uniqKey="Lipkin W" first="W Ian" last="Lipkin">W Ian Lipkin</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York</wicri:regionArea></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Caliciviridae (genetics)</term><term>Caliciviridae (isolation & purification)</term><term>Chiroptera (genetics)</term><term>Chiroptera (virology)</term><term>Egypt</term><term>Feces (virology)</term><term>High-Throughput Nucleotide Sequencing</term><term>Humans</term><term>Mammals (virology)</term><term>Metagenome (genetics)</term><term>Metagenomics</term><term>Middle East</term><term>Middle East Respiratory Syndrome Coronavirus</term><term>Paramyxoviridae (genetics)</term><term>Paramyxoviridae (isolation & purification)</term><term>Phylogeny</term><term>Picornaviridae (genetics)</term><term>Picornaviridae (isolation & purification)</term><term>RNA Viruses (genetics)</term><term>Rotavirus (genetics)</term><term>Rotavirus (isolation & purification)</term><term>Saudi Arabia</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Arabie saoudite</term><term>Caliciviridae (génétique)</term><term>Caliciviridae (isolement et purification)</term><term>Chiroptera (génétique)</term><term>Chiroptera (virologie)</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Fèces (virologie)</term><term>Humains</term><term>Mammifères (virologie)</term><term>Moyen Orient</term><term>Métagénome (génétique)</term><term>Métagénomique</term><term>Paramyxoviridae (génétique)</term><term>Paramyxoviridae (isolement et purification)</term><term>Phylogénie</term><term>Picornaviridae (génétique)</term><term>Picornaviridae (isolement et purification)</term><term>Rotavirus (génétique)</term><term>Rotavirus (isolement et purification)</term><term>Séquençage nucléotidique à haut débit</term><term>Virus à ARN (génétique)</term><term>Égypte</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Egypt</term><term>Middle East</term><term>Saudi Arabia</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Caliciviridae</term><term>Chiroptera</term><term>Metagenome</term><term>Paramyxoviridae</term><term>Picornaviridae</term><term>RNA Viruses</term><term>Rotavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Caliciviridae</term><term>Chiroptera</term><term>Métagénome</term><term>Paramyxoviridae</term><term>Picornaviridae</term><term>Rotavirus</term><term>Virus à ARN</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Caliciviridae</term><term>Paramyxoviridae</term><term>Picornaviridae</term><term>Rotavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Caliciviridae</term><term>Paramyxoviridae</term><term>Picornaviridae</term><term>Rotavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Fèces</term><term>Mammifères</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Feces</term><term>Mammals</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>High-Throughput Nucleotide Sequencing</term><term>Humans</term><term>Metagenomics</term><term>Middle East Respiratory Syndrome Coronavirus</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Arabie saoudite</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Humains</term><term>Moyen Orient</term><term>Métagénomique</term><term>Phylogénie</term><term>Séquençage nucléotidique à haut débit</term><term>Égypte</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Égypte</term><term>Arabie saoudite</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bats are implicated as natural reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, Ebola, Marburg, Nipah, Hendra, Rabies and other lyssaviruses. Accordingly, many One Health surveillance and viral discovery programs have focused on bats. In this report we present viral metagenomic data from bats collected in the Kingdom of Saudi Arabia [KSA]. Unbiased high throughput sequencing of fecal samples from 72 bat individuals comprising four species; lesser mouse-tailed bat (Rhinopoma hardwickii), Egyptian tomb bat (Taphozous perforatus), straw-colored fruit bat (Eidolon helvum), and Egyptian fruit bat (Rousettus aegyptiacus) revealed molecular evidence of a diverse set of viral families: Picornaviridae (hepatovirus, teschovirus, parechovirus), Reoviridae (rotavirus), Polyomaviridae (polyomavirus), Papillomaviridae (papillomavirus), Astroviridae (astrovirus), Caliciviridae (sapovirus), Coronaviridae (coronavirus), Adenoviridae (adenovirus), Paramyxoviridae (paramyxovirus), and unassigned mononegavirales (chuvirus). Additionally, we discovered a bastro-like virus (Middle East Hepe-Astrovirus), with a genomic organization similar to Hepeviridae. However, since it shared homology with Hepeviridae and Astroviridae at ORF1 and in ORF2, respectively, the newly discovered Hepe-Astrovirus may represent a phylogenetic bridge between Hepeviridae and Astroviridae.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30969980</PMID><DateCompleted><Year>2019</Year><Month>12</Month><Day>19</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><Issue>4</Issue><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.</ArticleTitle><Pagination><MedlinePgn>e0214227</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0214227</ELocationID><Abstract><AbstractText>Bats are implicated as natural reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, Ebola, Marburg, Nipah, Hendra, Rabies and other lyssaviruses. Accordingly, many One Health surveillance and viral discovery programs have focused on bats. In this report we present viral metagenomic data from bats collected in the Kingdom of Saudi Arabia [KSA]. Unbiased high throughput sequencing of fecal samples from 72 bat individuals comprising four species; lesser mouse-tailed bat (Rhinopoma hardwickii), Egyptian tomb bat (Taphozous perforatus), straw-colored fruit bat (Eidolon helvum), and Egyptian fruit bat (Rousettus aegyptiacus) revealed molecular evidence of a diverse set of viral families: Picornaviridae (hepatovirus, teschovirus, parechovirus), Reoviridae (rotavirus), Polyomaviridae (polyomavirus), Papillomaviridae (papillomavirus), Astroviridae (astrovirus), Caliciviridae (sapovirus), Coronaviridae (coronavirus), Adenoviridae (adenovirus), Paramyxoviridae (paramyxovirus), and unassigned mononegavirales (chuvirus). Additionally, we discovered a bastro-like virus (Middle East Hepe-Astrovirus), with a genomic organization similar to Hepeviridae. However, since it shared homology with Hepeviridae and Astroviridae at ORF1 and in ORF2, respectively, the newly discovered Hepe-Astrovirus may represent a phylogenetic bridge between Hepeviridae and Astroviridae.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mishra</LastName><ForeName>Nischay</ForeName><Initials>N</Initials><Identifier Source="ORCID">0000-0002-1177-9641</Identifier><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fagbo</LastName><ForeName>Shamsudeen F</ForeName><Initials>SF</Initials><AffiliationInfo><Affiliation>One Health Unit, Executive Directorate for Surveillance and Response, National Center for Disease Prevention and Control, Riyadh, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alagaili</LastName><ForeName>Abdulaziz N</ForeName><Initials>AN</Initials><AffiliationInfo><Affiliation>KSU Mammals Research Chair, Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nitido</LastName><ForeName>Adam</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Williams</LastName><ForeName>Simon H</ForeName><Initials>SH</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ng</LastName><ForeName>James</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Bohyun</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Durosinlorun</LastName><ForeName>Abdulkareem</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Federal Ministry of Agriculture and Rural Development, Kaduna, Nigeria.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Garcia</LastName><ForeName>Joel A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jain</LastName><ForeName>Komal</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kapoor</LastName><ForeName>Vishal</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Epstein</LastName><ForeName>Jonathan H</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>EcoHealth Alliance, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Briese</LastName><ForeName>Thomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Memish</LastName><ForeName>Ziad A</ForeName><Initials>ZA</Initials><AffiliationInfo><Affiliation>The College of Medicine, Al faisal University & Prince Mohammed Bin Abdulaziz Hospital, Ministry of Health, Riyadh, Kingdom of Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olival</LastName><ForeName>Kevin J</ForeName><Initials>KJ</Initials><AffiliationInfo><Affiliation>EcoHealth Alliance, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lipkin</LastName><ForeName>W Ian</ForeName><Initials>WI</Initials><AffiliationInfo><Affiliation>Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>U19 AI109761</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>04</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002139" MajorTopicYN="N">Caliciviridae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004534" MajorTopicYN="N" Type="Geographic">Egypt</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005243" MajorTopicYN="N">Feces</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008322" MajorTopicYN="N">Mammals</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054892" MajorTopicYN="N">Metagenome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D056186" MajorTopicYN="Y">Metagenomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008877" MajorTopicYN="N" Type="Geographic">Middle East</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065207" MajorTopicYN="N">Middle East Respiratory Syndrome Coronavirus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010252" MajorTopicYN="N">Paramyxoviridae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010849" MajorTopicYN="N">Picornaviridae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012328" MajorTopicYN="N">RNA Viruses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012401" MajorTopicYN="N">Rotavirus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012529" MajorTopicYN="N" Type="Geographic">Saudi Arabia</DescriptorName></MeshHeading></MeshHeadingList><CoiStatement>The authors have declared that no competing interests exist.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>10</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>03</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>4</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>4</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>12</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId 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