1470-8728 < 1471-2105 < 1471-213X

Facettes : Author.f

List of bibliographic references

Number of relevant bibliographic references: 53.
[0-20] [0 - 20][0 - 50][20-40]

Ident.	Authors (with country if any)	Title
000356 (2019)	Yoshihiro Shibuya ; Matteo Comin	Better quality score compression through sequence-based quality smoothing.
000357 (2019)	Jia Qian ; Matteo Comin	MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
000421 (2019)	Jianghui Wen ; Yeshu Liu ; Yu Shi ; Haoran Huang ; Bing Deng ; Xinping Xiao	A classification model for lncRNA and mRNA based on k-mers and a convolutional neural network.
000431 (2019)	Chuanyan Wu ; Rui Gao ; Yusen Zhang ; Yang De Marinis	PTPD: predicting therapeutic peptides by deep learning and word2vec.
000495 (2019)	Akio Miyao ; Jianyu Song Kiyomiya ; Keiko Iida ; Koji Doi ; Hiroshi Yasue	Polymorphic edge detection (PED): two efficient methods of polymorphism detection from next-generation sequencing data.
000533 (2019)	Tobias Neumann ; Veronika A. Herzog ; Matthias Muhar ; Arndt Von Haeseler ; Johannes Zuber ; Stefan L. Ameres ; Philipp Rescheneder	Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets.
000541 (2019)	Xiaolong Zhang ; Yanyan Shao ; Jichao Tian ; Yuwei Liao ; Peiying Li ; Yu Zhang ; Jun Chen ; Zhiguang Li	pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data.
000563 (2019)	Umberto Ferraro Petrillo ; Mara Sorella ; Giuseppe Cattaneo ; Raffaele Giancarlo ; Simona E. Rombo	Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics.
000663 (2019)	Ryan C. Shean ; Negar Makhsous ; Graham D. Stoddard ; Michelle J. Lin ; Alexander L. Greninger	VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank.
000667 (2019)	Akshay Tambe ; Lior Pachter	Barcode identification for single cell genomics.
000720 (2018)	Samuele Girotto ; Matteo Comin ; Cinzia Pizzi	Efficient computation of spaced seed hashing with block indexing.
000756 (2018)	Pierre Mahé ; Maud Tournoud	Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection.
000824 (2018)	Igor Saggese ; Elisa Bona ; Max Conway ; Francesco Favero ; Marco Ladetto ; Pietro Li ; Giovanni Manzini ; Flavio Mignone	STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
000837 (2018)	Yasunobu Okamura ; Kengo Kinoshita	Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data.
000847 (2018)	Carl G. De Boer ; Aviv Regev	BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization.
000914 (2018)	Jie Lin ; Jing Wei ; Donald Adjeroh ; Bing-Hua Jiang ; Yue Jiang	SSAW: A new sequence similarity analysis method based on the stationary discrete wavelet transform.
000981 (2018)	Shuxiang Ruan ; Gary D. Stormo	Comparison of discriminative motif optimization using matrix and DNA shape-based models.
000A77 (2017)	Kosai Al-Nakeeb ; Thomas Nordahl Petersen ; Thomas Sicheritz-Pontén	Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data.
000B01 (2017)	Chang Sik Kim ; Martyn D. Winn ; Vipin Sachdeva ; Kirk E. Jordan	K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity.
000B06 (2017)	Dinghua Li ; Yukun Huang ; Chi-Ming Leung ; Ruibang Luo ; Hing-Fung Ting ; Tak-Wah Lam	MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
000C36 (2017)	Axel Wedemeyer ; Lasse Kliemann ; Anand Srivastav ; Christian Schielke ; Thorsten B. Reusch ; Philip Rosenstiel	An improved filtering algorithm for big read datasets and its application to single-cell assembly.

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