DNA HOMO as a new landmark for nucleic acid properties. ab initio calculations and experimental mapping.
Identifieur interne : 002592 ( PubMed/Corpus ); précédent : 002591; suivant : 002593DNA HOMO as a new landmark for nucleic acid properties. ab initio calculations and experimental mapping.
Auteurs : T. Nakamura ; K. Nakatani ; I. SaitoSource :
- Nucleic acids symposium series [ 0261-3166 ] ; 1999.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Oligodeoxyribonucleotides.
- methods : Chemistry, Organic.
- Base Sequence, Hydrogen Bonding, Models, Molecular, Nucleic Acid Conformation, Static Electricity.
Abstract
Of the non-covalent binding forces in DNA-drug or DNA-protein interaction, electrostatic interaction, stacking interaction, hydrogen bonds and hydrophobic effect have been well established. However, only a few HOMO-LUMO interaction in DNA have been reported. We examined the ab initio calculations of B-DNA duplex 5-mers. Based on the calculated results, we investigated the mapping of HOMO experimentally and found that DNA cleavage patterns with Co(II) and BPO (Benzoyl peroxide) were in good agreement with the ab initio calculation results.
DOI: 10.1093/nass/42.1.119
PubMed: 10780408
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pubmed:10780408Le document en format XML
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Saito</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1999">1999</date><idno type="RBID">pubmed:10780408</idno><idno type="pmid">10780408</idno><idno type="doi">10.1093/nass/42.1.119</idno><idno type="wicri:Area/PubMed/Corpus">002592</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002592</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">DNA HOMO as a new landmark for nucleic acid properties. ab initio calculations and experimental mapping.</title><author><name sortKey="Nakamura, T" sort="Nakamura, T" uniqKey="Nakamura T" first="T" last="Nakamura">T. Nakamura</name><affiliation><nlm:affiliation>Department of Synthetic Chemistry and Biological Chemistry, Faculty of Engineering, Kyoto University, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nakatani, K" sort="Nakatani, K" uniqKey="Nakatani K" first="K" last="Nakatani">K. Nakatani</name></author><author><name sortKey="Saito, I" sort="Saito, I" uniqKey="Saito I" first="I" last="Saito">I. Saito</name></author></analytic><series><title level="j">Nucleic acids symposium series</title><idno type="ISSN">0261-3166</idno><imprint><date when="1999" type="published">1999</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence</term><term>Chemistry, Organic (methods)</term><term>DNA (chemistry)</term><term>Hydrogen Bonding</term><term>Models, Molecular</term><term>Nucleic Acid Conformation</term><term>Oligodeoxyribonucleotides (chemistry)</term><term>Static Electricity</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA</term><term>Oligodeoxyribonucleotides</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Chemistry, Organic</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Hydrogen Bonding</term><term>Models, Molecular</term><term>Nucleic Acid Conformation</term><term>Static Electricity</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Of the non-covalent binding forces in DNA-drug or DNA-protein interaction, electrostatic interaction, stacking interaction, hydrogen bonds and hydrophobic effect have been well established. However, only a few HOMO-LUMO interaction in DNA have been reported. We examined the ab initio calculations of B-DNA duplex 5-mers. Based on the calculated results, we investigated the mapping of HOMO experimentally and found that DNA cleavage patterns with Co(II) and BPO (Benzoyl peroxide) were in good agreement with the ab initio calculation results.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">10780408</PMID><DateCompleted><Year>2000</Year><Month>06</Month><Day>29</Day></DateCompleted><DateRevised><Year>2019</Year><Month>11</Month><Day>03</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0261-3166</ISSN><JournalIssue CitedMedium="Print"><Issue>42</Issue><PubDate><Year>1999</Year></PubDate></JournalIssue><Title>Nucleic acids symposium series</Title><ISOAbbreviation>Nucleic Acids Symp. Ser.</ISOAbbreviation></Journal><ArticleTitle>DNA HOMO as a new landmark for nucleic acid properties. ab initio calculations and experimental mapping.</ArticleTitle><Pagination><MedlinePgn>119-20</MedlinePgn></Pagination><Abstract><AbstractText>Of the non-covalent binding forces in DNA-drug or DNA-protein interaction, electrostatic interaction, stacking interaction, hydrogen bonds and hydrophobic effect have been well established. However, only a few HOMO-LUMO interaction in DNA have been reported. We examined the ab initio calculations of B-DNA duplex 5-mers. 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