Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.
Identifieur interne : 002006 ( PubMed/Corpus ); précédent : 002005; suivant : 002007Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.
Auteurs : Thi Hien Le ; Tatiana S. Oretskaya ; Timofei S. ZatsepinSource :
- Bioorganic & medicinal chemistry letters [ 1464-3405 ] ; 2009.
English descriptors
- KwdEn :
- Base Sequence, Chelating Agents (chemistry), DNA (chemistry), DNA Probes (chemistry), Humans, Ions (chemistry), Metals (chemistry), Microchip Analytical Procedures (methods), Molecular Sequence Data, Nickel (chemistry), Oligonucleotide Array Sequence Analysis, Oligonucleotides, Polymorphism, Single Nucleotide, Solubility, Tetrahydrofolates (chemistry).
- MESH :
- chemical , chemistry : Chelating Agents, DNA, DNA Probes, Ions, Metals, Nickel, Tetrahydrofolates.
- methods : Microchip Analytical Procedures.
- Base Sequence, Humans, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Oligonucleotides, Polymorphism, Single Nucleotide, Solubility.
Abstract
We developed a metal ion chelate-assisted ligation for SNP detection by microarray. An oligonucleotide probe was separated into two 9-10-mers bearing iminodiacetic residues at the gap point. Duplex formation with the DNA target was possible only if nickel ions were added, but a nucleotide substitution opposite the gap point prevented duplex formation. Here we demonstrate the application of this approach for SNP detection (A1298C) within the 5,10-methylenetetrahydrofolate reductase gene on a microarray.
DOI: 10.1016/j.bmcl.2009.06.033
PubMed: 19574044
Links to Exploration step
pubmed:19574044Le document en format XML
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<author><name sortKey="Le, Thi Hien" sort="Le, Thi Hien" uniqKey="Le T" first="Thi Hien" last="Le">Thi Hien Le</name>
<affiliation><nlm:affiliation>Chemistry Department, M.V. Lomonossov Moscow State University, Leninskije Gory, Moscow 119991, Russia.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Oretskaya, Tatiana S" sort="Oretskaya, Tatiana S" uniqKey="Oretskaya T" first="Tatiana S" last="Oretskaya">Tatiana S. Oretskaya</name>
</author>
<author><name sortKey="Zatsepin, Timofei S" sort="Zatsepin, Timofei S" uniqKey="Zatsepin T" first="Timofei S" last="Zatsepin">Timofei S. Zatsepin</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.</title>
<author><name sortKey="Le, Thi Hien" sort="Le, Thi Hien" uniqKey="Le T" first="Thi Hien" last="Le">Thi Hien Le</name>
<affiliation><nlm:affiliation>Chemistry Department, M.V. Lomonossov Moscow State University, Leninskije Gory, Moscow 119991, Russia.</nlm:affiliation>
</affiliation>
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<author><name sortKey="Oretskaya, Tatiana S" sort="Oretskaya, Tatiana S" uniqKey="Oretskaya T" first="Tatiana S" last="Oretskaya">Tatiana S. Oretskaya</name>
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<author><name sortKey="Zatsepin, Timofei S" sort="Zatsepin, Timofei S" uniqKey="Zatsepin T" first="Timofei S" last="Zatsepin">Timofei S. Zatsepin</name>
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<series><title level="j">Bioorganic & medicinal chemistry letters</title>
<idno type="eISSN">1464-3405</idno>
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<term>Chelating Agents (chemistry)</term>
<term>DNA (chemistry)</term>
<term>DNA Probes (chemistry)</term>
<term>Humans</term>
<term>Ions (chemistry)</term>
<term>Metals (chemistry)</term>
<term>Microchip Analytical Procedures (methods)</term>
<term>Molecular Sequence Data</term>
<term>Nickel (chemistry)</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Oligonucleotides</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Solubility</term>
<term>Tetrahydrofolates (chemistry)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Chelating Agents</term>
<term>DNA</term>
<term>DNA Probes</term>
<term>Ions</term>
<term>Metals</term>
<term>Nickel</term>
<term>Tetrahydrofolates</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Microchip Analytical Procedures</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term>
<term>Humans</term>
<term>Molecular Sequence Data</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Oligonucleotides</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Solubility</term>
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<front><div type="abstract" xml:lang="en">We developed a metal ion chelate-assisted ligation for SNP detection by microarray. An oligonucleotide probe was separated into two 9-10-mers bearing iminodiacetic residues at the gap point. Duplex formation with the DNA target was possible only if nickel ions were added, but a nucleotide substitution opposite the gap point prevented duplex formation. Here we demonstrate the application of this approach for SNP detection (A1298C) within the 5,10-methylenetetrahydrofolate reductase gene on a microarray.</div>
</front>
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<DateRevised><Year>2013</Year>
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<Title>Bioorganic & medicinal chemistry letters</Title>
<ISOAbbreviation>Bioorg. Med. Chem. Lett.</ISOAbbreviation>
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<ArticleTitle>Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.</ArticleTitle>
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<Abstract><AbstractText>We developed a metal ion chelate-assisted ligation for SNP detection by microarray. An oligonucleotide probe was separated into two 9-10-mers bearing iminodiacetic residues at the gap point. Duplex formation with the DNA target was possible only if nickel ions were added, but a nucleotide substitution opposite the gap point prevented duplex formation. Here we demonstrate the application of this approach for SNP detection (A1298C) within the 5,10-methylenetetrahydrofolate reductase gene on a microarray.</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Le</LastName>
<ForeName>Thi Hien</ForeName>
<Initials>TH</Initials>
<AffiliationInfo><Affiliation>Chemistry Department, M.V. Lomonossov Moscow State University, Leninskije Gory, Moscow 119991, Russia.</Affiliation>
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<Author ValidYN="Y"><LastName>Oretskaya</LastName>
<ForeName>Tatiana S</ForeName>
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<Author ValidYN="Y"><LastName>Zatsepin</LastName>
<ForeName>Timofei S</ForeName>
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<Language>eng</Language>
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